Wall clock time and date at job start Tue Mar 31 2020 20:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47385 * 2 1 4 4 C 1.53005 * 109.46919 * 240.00107 * 2 1 3 5 5 N 1.46492 * 109.47363 * 185.00413 * 4 2 1 6 6 C 1.34774 * 120.00453 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99519 * 359.97438 * 6 5 4 8 8 C 1.50694 * 120.00713 * 179.97438 * 6 5 4 9 9 C 1.50699 * 109.47843 * 179.97438 * 8 6 5 10 10 C 1.39869 * 125.90295 * 124.99796 * 9 8 6 11 11 C 1.35312 * 107.91889 * 180.22479 * 10 9 8 12 12 N 1.34951 * 107.74772 * 359.61173 * 11 10 9 13 13 C 1.46501 * 126.03602 * 180.15058 * 12 11 10 14 14 N 1.30837 * 125.89517 * 304.98057 * 9 8 6 15 15 N 1.46899 * 109.47014 * 120.00561 * 2 1 3 16 16 C 1.46897 * 111.00536 * 58.95222 * 15 2 1 17 17 C 1.46901 * 110.99881 * 294.99080 * 15 2 1 18 18 C 1.50702 * 109.46916 * 190.00187 * 17 15 2 19 19 O 1.21289 * 120.00312 * 0.02562 * 18 17 15 20 20 N 1.34784 * 119.99591 * 180.02562 * 18 17 15 21 21 C 1.37090 * 119.99557 * 179.97438 * 20 18 17 22 22 H 1.08003 * 120.00906 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99793 * 179.97438 * 21 20 18 24 24 N 1.31416 * 120.00122 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99958 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47226 * 90.00110 * 25 23 21 27 27 H 1.48510 * 109.47124 * 209.99954 * 25 23 21 28 28 H 1.48502 * 109.47069 * 329.99780 * 25 23 21 29 29 H 1.09006 * 109.46757 * 299.99727 * 1 2 3 30 30 H 1.08998 * 109.47132 * 59.99474 * 1 2 3 31 31 H 1.08997 * 109.47385 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46928 * 64.99896 * 4 2 1 33 33 H 1.09007 * 109.46809 * 305.00419 * 4 2 1 34 34 H 0.97007 * 120.00142 * 359.97438 * 5 4 2 35 35 H 1.09002 * 109.47210 * 59.99659 * 8 6 5 36 36 H 1.09007 * 109.47214 * 299.99761 * 8 6 5 37 37 H 1.08002 * 126.03560 * 359.95589 * 10 9 8 38 38 H 1.08008 * 126.12506 * 179.75891 * 11 10 9 39 39 H 1.08999 * 109.47098 * 270.25891 * 13 12 11 40 40 H 1.08998 * 109.47303 * 30.25669 * 13 12 11 41 41 H 1.08994 * 109.47129 * 150.25391 * 13 12 11 42 42 H 1.08996 * 109.47296 * 59.99426 * 16 15 2 43 43 H 1.08994 * 109.47614 * 180.02562 * 16 15 2 44 44 H 1.09008 * 109.46908 * 300.00046 * 16 15 2 45 45 H 1.08996 * 109.47161 * 310.00272 * 17 15 2 46 46 H 1.09002 * 109.46490 * 70.00427 * 17 15 2 47 47 H 0.96995 * 119.99911 * 0.02562 * 20 18 17 48 48 H 0.96999 * 119.99570 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.4999 -0.8265 -1.1907 6 6 4.1730 -1.4284 -2.1913 7 8 3.5698 -1.8833 -3.1401 8 6 5.6748 -1.5362 -2.1313 9 6 6.1772 -2.2467 -3.3617 10 6 7.1369 -1.7602 -4.2554 11 6 7.3091 -2.6868 -5.2263 12 7 6.4939 -3.7267 -4.9519 13 6 6.3629 -4.9517 -5.7447 14 7 5.7910 -3.4253 -3.7783 15 7 2.0196 -0.6926 1.1994 16 6 1.5283 -2.0762 1.2459 17 6 1.6488 0.0391 2.4180 18 6 2.3681 -0.5574 3.6004 19 8 3.1163 -1.4989 3.4433 20 7 2.1798 -0.0444 4.8325 21 6 2.8337 -0.5873 5.9082 22 1 3.5000 -1.4257 5.7684 23 6 2.6400 -0.0582 7.1784 24 7 3.2672 -0.5782 8.2095 25 14 1.4882 1.3924 7.4202 26 1 0.1151 0.8948 7.6890 27 1 1.9535 2.2074 8.5712 28 1 1.4804 2.2283 6.1928 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -0.1583 -2.1370 33 1 1.6052 -1.7198 -1.2952 34 1 3.9824 -0.4623 -0.4320 35 1 5.9636 -2.0993 -1.2438 36 1 6.1093 -0.5375 -2.0853 37 1 7.6467 -0.8107 -4.1854 38 1 7.9808 -2.6092 -6.0686 39 1 5.5877 -4.8154 -6.4987 40 1 7.3117 -5.1707 -6.2345 41 1 6.0920 -5.7804 -5.0906 42 1 1.8761 -2.6151 0.3646 43 1 1.9053 -2.5657 2.1438 44 1 0.4384 -2.0743 1.2639 45 1 1.9300 1.0868 2.3125 46 1 0.5723 -0.0346 2.5725 47 1 1.5811 0.7084 4.9582 48 1 3.1317 -0.2090 9.0962 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734033597.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:02 Heat of formation + Delta-G solvation = -4.365743 kcal Electronic energy + Delta-G solvation = -28799.311992 eV Core-core repulsion = 24697.650218 eV Total energy + Delta-G solvation = -4101.661774 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.09633 -40.87726 -40.26518 -38.76312 -35.98724 -35.20035 -34.74570 -33.70275 -32.28177 -31.26577 -30.58261 -29.46122 -27.52434 -26.98104 -26.21146 -25.07976 -22.07400 -21.78851 -21.36305 -20.98968 -20.31044 -20.02324 -18.11583 -17.85279 -17.72795 -17.11676 -16.87381 -16.71284 -16.29917 -16.25348 -16.01249 -15.59613 -15.09578 -14.92348 -14.82754 -14.61968 -14.41434 -14.29935 -14.15899 -13.87890 -13.74773 -13.57870 -13.36563 -13.16590 -13.07192 -12.91508 -12.81616 -12.73315 -12.40351 -12.37608 -12.23530 -11.95024 -11.72868 -11.48709 -11.41515 -10.86953 -10.31698 -10.18342 -10.17070 -9.94412 -9.43189 -9.16380 -8.37245 -5.97297 1.03235 1.32515 1.38168 1.46900 1.72759 1.74556 1.81353 2.03009 2.26165 2.42671 2.67296 3.19549 3.30837 3.57598 3.78146 3.93807 4.01122 4.07865 4.20542 4.24922 4.34020 4.36400 4.40068 4.43146 4.47385 4.58211 4.58249 4.65847 4.67019 4.67928 4.81078 4.85639 4.88192 4.93165 5.04456 5.17006 5.21693 5.33431 5.56780 5.57873 5.72150 5.93370 6.04161 6.20256 6.24883 6.64729 6.68975 6.84893 6.94355 7.37056 7.46110 8.04426 8.80464 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017583 B = 0.002087 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.094964 B =13412.001931 C =14318.257241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.073 3.927 3 H 0.113 0.887 4 C 0.134 3.866 5 N -0.709 5.709 6 C 0.513 3.487 7 O -0.580 6.580 8 C -0.059 4.059 9 C 0.065 3.935 10 C -0.284 4.284 11 C 0.055 3.945 12 N -0.388 5.388 13 C 0.094 3.906 14 N -0.324 5.324 15 N -0.524 5.524 16 C 0.026 3.974 17 C 0.054 3.946 18 C 0.452 3.548 19 O -0.603 6.603 20 N -0.594 5.594 21 C -0.322 4.322 22 H 0.055 0.945 23 C -0.019 4.019 24 N -0.937 5.937 25 Si 0.964 3.036 26 H -0.260 1.260 27 H -0.278 1.278 28 H -0.227 1.227 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.416 0.584 35 H 0.114 0.886 36 H 0.146 0.854 37 H 0.171 0.829 38 H 0.216 0.784 39 H 0.078 0.922 40 H 0.123 0.877 41 H 0.080 0.920 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.038 0.962 45 H 0.125 0.875 46 H 0.078 0.922 47 H 0.389 0.611 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.761 5.014 -27.633 28.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.035 4.035 3 H 0.130 0.870 4 C 0.009 3.991 5 N -0.361 5.361 6 C 0.299 3.701 7 O -0.460 6.460 8 C -0.100 4.100 9 C -0.102 4.102 10 C -0.313 4.313 11 C -0.091 4.091 12 N -0.170 5.170 13 C -0.046 4.046 14 N -0.148 5.148 15 N -0.248 5.248 16 C -0.122 4.122 17 C -0.077 4.077 18 C 0.240 3.760 19 O -0.487 6.487 20 N -0.236 5.236 21 C -0.452 4.452 22 H 0.073 0.927 23 C -0.217 4.217 24 N -0.578 5.578 25 Si 0.784 3.216 26 H -0.185 1.185 27 H -0.203 1.203 28 H -0.151 1.151 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.253 0.747 35 H 0.132 0.868 36 H 0.164 0.836 37 H 0.188 0.812 38 H 0.232 0.768 39 H 0.097 0.903 40 H 0.141 0.859 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.143 0.857 46 H 0.096 0.904 47 H 0.224 0.776 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.627 2.878 -28.110 28.264 hybrid contribution -0.565 0.877 1.133 1.540 sum 0.062 3.756 -26.977 27.237 Atomic orbital electron populations 1.22387 0.95172 1.02707 1.03988 1.22095 0.94538 0.98949 0.87920 0.86958 1.21356 0.80233 1.00066 0.97398 1.45814 1.07802 1.59146 1.23329 1.20773 0.90513 0.76919 0.81879 1.90691 1.71133 1.48920 1.35257 1.20130 0.91096 1.03608 0.95154 1.21975 0.97091 0.93193 0.97921 1.21740 1.06825 1.04491 0.98249 1.23211 0.96600 0.87890 1.01374 1.48904 1.31406 1.16863 1.19872 1.22125 1.05334 0.82686 0.94420 1.77351 1.18854 1.18379 1.00192 1.61714 1.59981 1.02118 1.00972 1.22376 0.97590 0.90009 1.02226 1.21851 0.98559 0.99575 0.87691 1.20934 0.85191 0.85455 0.84388 1.90532 1.41508 1.31358 1.85299 1.42040 1.43014 1.32112 1.06475 1.18971 1.24537 1.15278 0.86383 0.92719 1.26118 0.99657 1.01863 0.94041 1.69815 1.44107 1.43632 1.00296 0.85373 0.78295 0.77864 0.80029 1.18490 1.20322 1.15056 0.90922 0.89967 0.92751 0.90515 0.93430 0.74654 0.86791 0.83618 0.81192 0.76771 0.90317 0.85901 0.90150 0.92031 0.92929 0.94402 0.85669 0.90381 0.77594 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.84 8.50 71.98 0.61 -2.22 16 2 C 0.07 1.36 2.50 44.92 0.11 1.47 16 3 H 0.11 1.66 8.03 -2.39 -0.02 1.64 16 4 C 0.13 2.91 4.69 86.38 0.40 3.32 16 5 N -0.71 -16.42 5.39 -463.07 -2.49 -18.91 16 6 C 0.51 14.02 7.82 87.66 0.69 14.70 16 7 O -0.58 -20.86 15.56 -3.05 -0.05 -20.91 16 8 C -0.06 -1.28 6.28 29.10 0.18 -1.10 16 9 C 0.06 1.69 6.01 43.10 0.26 1.95 16 10 C -0.28 -5.58 10.72 21.99 0.24 -5.35 16 11 C 0.06 0.91 11.49 83.54 0.96 1.87 16 12 N -0.39 -8.44 4.01 -369.57 -1.48 -9.93 16 13 C 0.09 1.18 11.47 127.77 1.47 2.64 16 14 N -0.32 -9.91 11.92 -47.39 -0.56 -10.48 16 15 N -0.52 -13.93 3.93 -901.62 -3.54 -17.47 16 16 C 0.03 0.79 8.46 127.69 1.08 1.87 16 17 C 0.05 1.49 4.89 85.56 0.42 1.91 16 18 C 0.45 19.31 7.47 87.66 0.66 19.97 16 19 O -0.60 -31.87 13.91 -3.06 -0.04 -31.91 16 20 N -0.59 -26.94 5.09 -306.98 -1.56 -28.50 16 21 C -0.32 -18.51 10.16 84.04 0.85 -17.66 16 22 H 0.05 3.77 7.39 -2.91 -0.02 3.74 16 23 C -0.02 -1.03 5.50 84.93 0.47 -0.56 16 24 N -0.94 -56.30 13.96 21.66 0.30 -55.99 16 25 Si 0.96 38.08 27.74 68.60 1.90 39.98 16 26 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 27 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 28 H -0.23 -7.38 6.52 99.48 0.65 -6.73 16 29 H 0.07 1.03 6.75 -2.38 -0.02 1.02 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 0.96 6.39 -2.39 -0.02 0.95 16 32 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 33 H 0.05 1.23 6.70 -2.38 -0.02 1.22 16 34 H 0.42 8.89 8.14 -92.70 -0.75 8.13 16 35 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.15 2.04 8.12 -2.38 -0.02 2.02 16 37 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 38 H 0.22 1.35 8.06 -2.91 -0.02 1.33 16 39 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.06 1.86 6.44 -2.39 -0.02 1.85 16 43 H 0.05 2.08 5.82 -2.39 -0.01 2.06 16 44 H 0.04 1.00 6.28 -2.38 -0.01 0.98 16 45 H 0.13 2.65 8.00 -2.39 -0.02 2.63 16 46 H 0.08 1.81 6.94 -2.39 -0.02 1.80 16 47 H 0.39 14.46 5.76 -92.71 -0.53 13.93 16 48 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -90.50 392.25 0.51 -89.98 By element: Atomic # 1 Polarization: 41.66 SS G_CDS: -0.35 Total: 41.32 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: 8.39 Total: 22.82 kcal Atomic # 7 Polarization: -131.94 SS G_CDS: -9.35 Total: -141.28 kcal Atomic # 8 Polarization: -52.73 SS G_CDS: -0.09 Total: -52.82 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 1.90 Total: 39.98 kcal Total: -90.50 0.51 -89.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734033597.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.619 kcal (2) G-P(sol) polarization free energy of solvation -90.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds