Wall clock time and date at job start Tue Mar 31 2020 20:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46573 * 2 1 4 4 C 1.52996 * 109.46908 * 119.99822 * 2 1 3 5 5 N 1.46507 * 109.47025 * 174.99825 * 4 2 1 6 6 C 1.34771 * 120.00230 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99762 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00012 * 180.02562 * 6 5 4 9 9 C 1.50703 * 109.46914 * 180.02562 * 8 6 5 10 10 C 1.39874 * 125.89852 * 124.71962 * 9 8 6 11 11 C 1.35314 * 107.92004 * 179.86303 * 10 9 8 12 12 N 1.34944 * 107.74398 * 0.38874 * 11 10 9 13 13 C 1.46512 * 126.03519 * 179.75084 * 12 11 10 14 14 N 1.30832 * 125.89984 * 305.02070 * 9 8 6 15 15 N 1.46899 * 109.46950 * 240.00153 * 2 1 3 16 16 C 1.46901 * 110.99679 * 306.04509 * 15 2 1 17 17 C 1.46893 * 111.00143 * 69.99620 * 15 2 1 18 18 C 1.50706 * 109.47176 * 169.99759 * 17 15 2 19 19 O 1.21295 * 119.99584 * 0.02562 * 18 17 15 20 20 N 1.34774 * 120.00020 * 180.02562 * 18 17 15 21 21 C 1.37095 * 119.99737 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00254 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99943 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00099 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00243 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.46883 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47233 * 120.00270 * 25 23 21 28 28 H 1.48501 * 109.47364 * 240.00343 * 25 23 21 29 29 H 1.09005 * 109.47325 * 299.99882 * 1 2 3 30 30 H 1.08997 * 109.47238 * 59.99883 * 1 2 3 31 31 H 1.09004 * 109.47404 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47635 * 294.99818 * 4 2 1 33 33 H 1.09007 * 109.47087 * 55.00447 * 4 2 1 34 34 H 0.97000 * 119.99686 * 359.97438 * 5 4 2 35 35 H 1.08996 * 109.47322 * 300.00066 * 8 6 5 36 36 H 1.08996 * 109.47155 * 60.00087 * 8 6 5 37 37 H 1.08007 * 126.03993 * 359.97438 * 10 9 8 38 38 H 1.08004 * 126.12898 * 180.14341 * 11 10 9 39 39 H 1.08997 * 109.46592 * 269.97723 * 13 12 11 40 40 H 1.09003 * 109.46736 * 29.98059 * 13 12 11 41 41 H 1.08997 * 109.46993 * 149.97989 * 13 12 11 42 42 H 1.09007 * 109.47214 * 183.95845 * 16 15 2 43 43 H 1.09002 * 109.47259 * 303.95383 * 16 15 2 44 44 H 1.08999 * 109.47697 * 63.95865 * 16 15 2 45 45 H 1.09001 * 109.46739 * 50.00168 * 17 15 2 46 46 H 1.09000 * 109.47767 * 290.00427 * 17 15 2 47 47 H 0.96994 * 119.99756 * 0.02562 * 20 18 17 48 48 H 0.96999 * 120.00288 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1906 6 6 4.1731 -1.4282 2.1911 7 8 3.5700 -1.8832 3.1400 8 6 5.6750 -1.5359 2.1310 9 6 6.1773 -2.2464 3.3615 10 6 6.9806 -3.3913 3.3769 11 6 7.2168 -3.7168 4.6689 12 7 6.5782 -2.8151 5.4436 13 6 6.5627 -2.7947 6.9085 14 7 5.9328 -1.9020 4.5997 15 7 2.0196 -0.6925 -1.1995 16 6 1.4342 -2.0354 -1.3078 17 6 1.7528 0.0972 -2.4090 18 6 2.4773 -0.5163 -3.5794 19 8 3.1495 -1.5136 -3.4215 20 7 2.3785 0.0432 -4.8016 21 6 3.0372 -0.5152 -5.8664 22 1 3.6350 -1.4037 -5.7259 23 6 2.9348 0.0612 -7.1265 24 7 2.2071 1.1420 -7.2975 25 14 3.8329 -0.6992 -8.5773 26 1 4.5781 -1.9009 -8.1234 27 1 2.8490 -1.0913 -9.6182 28 1 4.7851 0.2897 -9.1436 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.7517 -0.1583 2.1370 33 1 1.6053 -1.7198 1.2951 34 1 3.9824 -0.4628 0.4315 35 1 5.9637 -2.0989 1.2435 36 1 6.1093 -0.5372 2.0849 37 1 7.3490 -3.9209 2.5106 38 1 7.8070 -4.5514 5.0177 39 1 5.7196 -3.3829 7.2710 40 1 7.4921 -3.2197 7.2876 41 1 6.4647 -1.7664 7.2565 42 1 1.8663 -2.5522 -2.1648 43 1 1.6465 -2.5987 -0.3991 44 1 0.3555 -1.9521 -1.4399 45 1 2.1024 1.1189 -2.2603 46 1 0.6813 0.1053 -2.6087 47 1 1.8413 0.8409 -4.9277 48 1 2.1359 1.5446 -8.1771 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734033600.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:05 Heat of formation + Delta-G solvation = 18.800622 kcal Electronic energy + Delta-G solvation = -28735.115886 eV Core-core repulsion = 24634.458681 eV Total energy + Delta-G solvation = -4100.657205 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.29316 -39.63740 -38.73995 -37.25778 -34.29111 -33.94146 -33.76042 -31.33690 -31.14376 -30.45633 -29.71567 -27.87045 -26.68711 -25.56523 -25.17053 -23.71902 -21.30232 -20.82954 -20.09682 -19.37982 -19.08131 -17.84177 -17.14306 -16.89529 -16.48481 -15.97924 -15.54598 -15.52443 -14.97592 -14.84751 -14.66642 -14.22546 -14.06605 -13.86360 -13.69486 -13.41407 -13.22540 -13.15278 -12.94772 -12.73263 -12.65178 -12.44756 -12.28586 -12.07004 -11.72933 -11.72476 -11.43760 -11.22185 -11.19907 -10.92201 -10.71407 -10.65171 -10.34916 -10.23037 -9.75491 -9.49109 -9.30659 -8.86217 -8.65477 -8.47466 -7.98477 -7.84878 -6.42489 -3.83151 1.80145 2.38529 2.63405 2.83724 3.15621 3.26448 3.33235 3.41347 3.89938 3.97655 4.24579 4.27850 4.61746 4.70803 4.76583 4.88643 4.92656 5.07443 5.11862 5.15300 5.18197 5.23008 5.28042 5.36028 5.48875 5.58577 5.59383 5.60687 5.70274 5.78227 5.80816 5.90874 5.92569 5.96299 6.02040 6.17886 6.27787 6.52721 6.57570 6.63008 6.88583 7.24672 7.36528 7.54780 7.65713 7.73251 8.06092 8.42153 8.61208 9.17831 9.54190 10.05879 10.75276 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015395 B = 0.002103 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.305165 B =13312.962035 C =14726.012133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.063 3.937 3 H 0.088 0.912 4 C 0.135 3.865 5 N -0.715 5.715 6 C 0.515 3.485 7 O -0.537 6.537 8 C -0.061 4.061 9 C 0.086 3.914 10 C -0.264 4.264 11 C 0.047 3.953 12 N -0.380 5.380 13 C 0.104 3.896 14 N -0.265 5.265 15 N -0.510 5.510 16 C 0.017 3.983 17 C 0.044 3.956 18 C 0.444 3.556 19 O -0.577 6.577 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.104 0.896 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.412 0.588 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.148 0.852 38 H 0.172 0.828 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.060 0.940 44 H 0.020 0.980 45 H 0.087 0.913 46 H 0.049 0.951 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.608 -3.114 22.383 23.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.046 4.046 3 H 0.106 0.894 4 C 0.010 3.990 5 N -0.368 5.368 6 C 0.300 3.700 7 O -0.414 6.414 8 C -0.103 4.103 9 C -0.081 4.081 10 C -0.293 4.293 11 C -0.099 4.099 12 N -0.163 5.163 13 C -0.038 4.038 14 N -0.087 5.087 15 N -0.233 5.233 16 C -0.130 4.130 17 C -0.087 4.087 18 C 0.230 3.770 19 O -0.461 6.461 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.248 0.752 35 H 0.134 0.866 36 H 0.127 0.873 37 H 0.166 0.834 38 H 0.189 0.811 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.114 0.886 43 H 0.078 0.922 44 H 0.038 0.962 45 H 0.105 0.895 46 H 0.067 0.933 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.525 -3.246 23.988 24.626 hybrid contribution -0.251 -0.165 -1.834 1.858 sum 4.273 -3.411 22.154 22.819 Atomic orbital electron populations 1.22400 0.96670 1.02812 1.02548 1.22046 0.93439 0.98552 0.90567 0.89412 1.21312 0.80499 1.00697 0.96482 1.45797 1.07542 1.59804 1.23614 1.20313 0.89437 0.77914 0.82335 1.90717 1.70083 1.47351 1.33234 1.20034 0.92869 1.02443 0.94907 1.21563 0.97658 0.96096 0.92776 1.21392 1.09391 1.01550 0.97011 1.22469 0.99594 0.96345 0.91453 1.48526 1.39233 1.21947 1.06554 1.21806 1.02995 1.04514 0.74466 1.77411 1.16975 1.13730 1.00615 1.61803 1.58197 1.02793 1.00548 1.22593 0.96300 0.90276 1.03860 1.21890 0.98632 0.97711 0.90468 1.19738 0.86435 0.87113 0.83744 1.90486 1.44346 1.27097 1.84181 1.41875 1.44630 1.27118 1.06548 1.19736 1.26100 1.10872 0.85969 0.87859 1.25257 0.97566 0.96191 0.98993 1.69618 1.39948 1.20321 1.24451 0.85815 0.78968 0.79053 0.80594 1.19219 1.20834 1.20771 0.91982 0.91817 0.91800 0.91490 0.91657 0.75239 0.86586 0.87313 0.83383 0.81105 0.90891 0.89662 0.89429 0.88591 0.92169 0.96193 0.89476 0.93295 0.77546 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.94 8.44 37.16 0.31 -1.62 16 2 C 0.06 0.74 2.47 -67.71 -0.17 0.57 16 3 H 0.09 0.95 7.93 -51.93 -0.41 0.54 16 4 C 0.13 1.64 4.85 -4.04 -0.02 1.62 16 5 N -0.71 -8.94 5.39 -60.29 -0.32 -9.26 16 6 C 0.52 7.20 7.82 -10.99 -0.09 7.11 16 7 O -0.54 -9.60 15.56 5.55 0.09 -9.51 16 8 C -0.06 -0.68 6.28 -29.04 -0.18 -0.86 16 9 C 0.09 1.14 6.02 -82.40 -0.50 0.64 16 10 C -0.26 -2.93 10.72 -40.01 -0.43 -3.36 16 11 C 0.05 0.45 11.49 -17.23 -0.20 0.25 16 12 N -0.38 -4.21 4.01 -68.15 -0.27 -4.48 16 13 C 0.10 0.66 11.47 59.85 0.69 1.35 16 14 N -0.27 -3.85 11.92 33.67 0.40 -3.44 16 15 N -0.51 -7.61 3.89 -236.33 -0.92 -8.53 16 16 C 0.02 0.27 8.32 60.07 0.50 0.77 16 17 C 0.04 0.73 5.02 -4.98 -0.02 0.71 16 18 C 0.44 9.93 7.51 -10.98 -0.08 9.85 16 19 O -0.58 -14.71 13.88 5.54 0.08 -14.63 16 20 N -0.56 -13.82 5.29 -10.96 -0.06 -13.88 16 21 C -0.30 -8.07 9.68 -14.93 -0.14 -8.22 16 22 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 23 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.14 13.05 55.50 0.72 -23.42 16 25 Si 0.93 20.73 29.55 -169.99 -5.02 15.71 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.68 6.91 -51.93 -0.36 0.32 16 31 H 0.06 0.70 6.42 -51.93 -0.33 0.36 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.88 6.71 -51.92 -0.35 0.53 16 34 H 0.41 4.87 8.14 -40.82 -0.33 4.54 16 35 H 0.12 1.08 8.12 -51.93 -0.42 0.66 16 36 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 38 H 0.17 0.93 8.06 -52.48 -0.42 0.50 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.10 1.85 5.88 -51.92 -0.31 1.54 16 43 H 0.06 0.88 6.40 -51.93 -0.33 0.55 16 44 H 0.02 0.29 6.46 -51.93 -0.34 -0.05 16 45 H 0.09 1.29 7.93 -51.93 -0.41 0.87 16 46 H 0.05 0.76 7.06 -51.93 -0.37 0.39 16 47 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 48 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 395.75 15.07 5.96 5.96 Total: -1.00 -35.77 395.75 -6.95 -42.71 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -7.17 Total: 13.48 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: -0.43 Total: 9.28 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: -0.45 Total: -63.00 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: 0.16 Total: -24.14 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.77 -6.95 -42.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734033600.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.513 kcal (2) G-P(sol) polarization free energy of solvation -35.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds