Wall clock time and date at job start Tue Mar 31 2020 20:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46573 * 2 1 4 4 C 1.52996 * 109.46908 * 119.99822 * 2 1 3 5 5 N 1.46507 * 109.47025 * 174.99825 * 4 2 1 6 6 C 1.34771 * 120.00230 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99762 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00012 * 180.02562 * 6 5 4 9 9 C 1.50703 * 109.46914 * 180.02562 * 8 6 5 10 10 C 1.39874 * 125.89852 * 124.71962 * 9 8 6 11 11 C 1.35314 * 107.92004 * 179.86303 * 10 9 8 12 12 N 1.34944 * 107.74398 * 0.38874 * 11 10 9 13 13 C 1.46512 * 126.03519 * 179.75084 * 12 11 10 14 14 N 1.30832 * 125.89984 * 305.02070 * 9 8 6 15 15 N 1.46899 * 109.46950 * 240.00153 * 2 1 3 16 16 C 1.46901 * 110.99679 * 306.04509 * 15 2 1 17 17 C 1.46893 * 111.00143 * 69.99620 * 15 2 1 18 18 C 1.50706 * 109.47176 * 169.99759 * 17 15 2 19 19 O 1.21295 * 119.99584 * 0.02562 * 18 17 15 20 20 N 1.34774 * 120.00020 * 180.02562 * 18 17 15 21 21 C 1.37095 * 119.99737 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00254 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99943 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00099 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00243 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.46883 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47233 * 120.00270 * 25 23 21 28 28 H 1.48501 * 109.47364 * 240.00343 * 25 23 21 29 29 H 1.09005 * 109.47325 * 299.99882 * 1 2 3 30 30 H 1.08997 * 109.47238 * 59.99883 * 1 2 3 31 31 H 1.09004 * 109.47404 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47635 * 294.99818 * 4 2 1 33 33 H 1.09007 * 109.47087 * 55.00447 * 4 2 1 34 34 H 0.97000 * 119.99686 * 359.97438 * 5 4 2 35 35 H 1.08996 * 109.47322 * 300.00066 * 8 6 5 36 36 H 1.08996 * 109.47155 * 60.00087 * 8 6 5 37 37 H 1.08007 * 126.03993 * 359.97438 * 10 9 8 38 38 H 1.08004 * 126.12898 * 180.14341 * 11 10 9 39 39 H 1.08997 * 109.46592 * 269.97723 * 13 12 11 40 40 H 1.09003 * 109.46736 * 29.98059 * 13 12 11 41 41 H 1.08997 * 109.46993 * 149.97989 * 13 12 11 42 42 H 1.09007 * 109.47214 * 183.95845 * 16 15 2 43 43 H 1.09002 * 109.47259 * 303.95383 * 16 15 2 44 44 H 1.08999 * 109.47697 * 63.95865 * 16 15 2 45 45 H 1.09001 * 109.46739 * 50.00168 * 17 15 2 46 46 H 1.09000 * 109.47767 * 290.00427 * 17 15 2 47 47 H 0.96994 * 119.99756 * 0.02562 * 20 18 17 48 48 H 0.96999 * 120.00288 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1906 6 6 4.1731 -1.4282 2.1911 7 8 3.5700 -1.8832 3.1400 8 6 5.6750 -1.5359 2.1310 9 6 6.1773 -2.2464 3.3615 10 6 6.9806 -3.3913 3.3769 11 6 7.2168 -3.7168 4.6689 12 7 6.5782 -2.8151 5.4436 13 6 6.5627 -2.7947 6.9085 14 7 5.9328 -1.9020 4.5997 15 7 2.0196 -0.6925 -1.1995 16 6 1.4342 -2.0354 -1.3078 17 6 1.7528 0.0972 -2.4090 18 6 2.4773 -0.5163 -3.5794 19 8 3.1495 -1.5136 -3.4215 20 7 2.3785 0.0432 -4.8016 21 6 3.0372 -0.5152 -5.8664 22 1 3.6350 -1.4037 -5.7259 23 6 2.9348 0.0612 -7.1265 24 7 2.2071 1.1420 -7.2975 25 14 3.8329 -0.6992 -8.5773 26 1 4.5781 -1.9009 -8.1234 27 1 2.8490 -1.0913 -9.6182 28 1 4.7851 0.2897 -9.1436 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.7517 -0.1583 2.1370 33 1 1.6053 -1.7198 1.2951 34 1 3.9824 -0.4628 0.4315 35 1 5.9637 -2.0989 1.2435 36 1 6.1093 -0.5372 2.0849 37 1 7.3490 -3.9209 2.5106 38 1 7.8070 -4.5514 5.0177 39 1 5.7196 -3.3829 7.2710 40 1 7.4921 -3.2197 7.2876 41 1 6.4647 -1.7664 7.2565 42 1 1.8663 -2.5522 -2.1648 43 1 1.6465 -2.5987 -0.3991 44 1 0.3555 -1.9521 -1.4399 45 1 2.1024 1.1189 -2.2603 46 1 0.6813 0.1053 -2.6087 47 1 1.8413 0.8409 -4.9277 48 1 2.1359 1.5446 -8.1771 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734033600.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:04 Heat of formation + Delta-G solvation = -9.149195 kcal Electronic energy + Delta-G solvation = -28736.327881 eV Core-core repulsion = 24634.458681 eV Total energy + Delta-G solvation = -4101.869200 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.09731 -40.81148 -40.18556 -38.69483 -35.93934 -35.18958 -34.74161 -33.22167 -32.26825 -31.26831 -30.57098 -29.28968 -27.53406 -27.00656 -26.22235 -25.18318 -22.07060 -21.79006 -21.34411 -20.72828 -20.27531 -19.76554 -18.10143 -17.85397 -17.73322 -17.08941 -16.85987 -16.50637 -16.33564 -16.20285 -16.01712 -15.71303 -15.16805 -15.03094 -14.73116 -14.55919 -14.45752 -14.12204 -14.05392 -13.66271 -13.57099 -13.43232 -13.38812 -13.14218 -13.04719 -12.92362 -12.78949 -12.72025 -12.40480 -12.34034 -12.24377 -12.09010 -11.73568 -11.50564 -11.40665 -10.87007 -10.21989 -10.15856 -9.94637 -9.93082 -9.43656 -9.14941 -8.42176 -5.89679 1.01974 1.38940 1.44321 1.57787 1.71185 1.76033 1.81324 2.12926 2.30776 2.43875 2.80882 3.25528 3.49253 3.56584 3.79037 3.93591 4.02371 4.11161 4.23323 4.28891 4.33610 4.39918 4.41877 4.44905 4.56237 4.57628 4.60858 4.65491 4.68358 4.71225 4.82014 4.85708 4.87181 4.94160 5.02123 5.15610 5.23134 5.31364 5.46259 5.57424 5.71450 5.92513 6.10775 6.23101 6.23912 6.66672 6.69654 6.83326 7.19229 7.37359 7.63943 8.19973 8.75380 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015395 B = 0.002103 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.305165 B =13312.962035 C =14726.012133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.072 3.928 3 H 0.106 0.894 4 C 0.137 3.863 5 N -0.708 5.708 6 C 0.513 3.487 7 O -0.580 6.580 8 C -0.058 4.058 9 C 0.066 3.934 10 C -0.289 4.289 11 C 0.056 3.944 12 N -0.387 5.387 13 C 0.095 3.905 14 N -0.317 5.317 15 N -0.520 5.520 16 C 0.027 3.973 17 C 0.058 3.942 18 C 0.444 3.556 19 O -0.611 6.611 20 N -0.577 5.577 21 C -0.326 4.326 22 H 0.079 0.921 23 C -0.015 4.015 24 N -0.922 5.922 25 Si 0.989 3.011 26 H -0.273 1.273 27 H -0.274 1.274 28 H -0.272 1.272 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.416 0.584 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.163 0.837 38 H 0.214 0.786 39 H 0.077 0.923 40 H 0.122 0.878 41 H 0.084 0.916 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.033 0.967 45 H 0.113 0.887 46 H 0.067 0.933 47 H 0.395 0.605 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.009 -2.789 23.083 23.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.037 4.037 3 H 0.124 0.876 4 C 0.012 3.988 5 N -0.360 5.360 6 C 0.299 3.701 7 O -0.460 6.460 8 C -0.099 4.099 9 C -0.101 4.101 10 C -0.318 4.318 11 C -0.090 4.090 12 N -0.169 5.169 13 C -0.045 4.045 14 N -0.140 5.140 15 N -0.244 5.244 16 C -0.121 4.121 17 C -0.073 4.073 18 C 0.231 3.769 19 O -0.497 6.497 20 N -0.215 5.215 21 C -0.456 4.456 22 H 0.097 0.903 23 C -0.214 4.214 24 N -0.563 5.563 25 Si 0.814 3.186 26 H -0.198 1.198 27 H -0.200 1.200 28 H -0.198 1.198 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.253 0.747 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.181 0.819 38 H 0.231 0.769 39 H 0.096 0.904 40 H 0.140 0.860 41 H 0.103 0.897 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.051 0.949 45 H 0.131 0.869 46 H 0.085 0.915 47 H 0.229 0.771 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.910 -2.886 24.690 25.338 hybrid contribution -0.369 -0.315 -1.921 1.982 sum 4.541 -3.201 22.769 23.437 Atomic orbital electron populations 1.22366 0.95279 1.02795 1.03622 1.22068 0.94470 0.98750 0.88392 0.87621 1.21315 0.80277 1.00128 0.97051 1.45808 1.07776 1.59114 1.23318 1.20774 0.90520 0.77053 0.81719 1.90689 1.71134 1.49306 1.34900 1.20113 0.90863 1.03756 0.95193 1.21933 0.98163 0.97042 0.92927 1.21741 1.10006 1.01533 0.98533 1.23156 0.98468 0.96435 0.90905 1.48906 1.38590 1.21537 1.07897 1.22143 1.05188 1.04876 0.72330 1.77300 1.19030 1.16036 1.01665 1.61717 1.59039 1.02565 1.01038 1.22393 0.96754 0.90628 1.02345 1.21756 0.98706 0.98328 0.88541 1.20787 0.85387 0.86213 0.84480 1.90474 1.45689 1.28618 1.84896 1.41941 1.45110 1.27528 1.06904 1.19663 1.27308 1.10992 0.87627 0.90294 1.25979 0.98057 0.96523 1.00853 1.69675 1.40479 1.20910 1.25256 0.84917 0.78021 0.78149 0.77543 1.19775 1.19953 1.19762 0.90056 0.91590 0.92391 0.90836 0.93044 0.74708 0.84912 0.85466 0.81902 0.76903 0.90446 0.85978 0.89724 0.92521 0.91566 0.94870 0.86860 0.91522 0.77125 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.31 8.44 71.98 0.61 -2.70 16 2 C 0.07 1.51 2.47 44.91 0.11 1.62 16 3 H 0.11 1.93 7.93 -2.39 -0.02 1.91 16 4 C 0.14 3.18 4.85 86.38 0.42 3.60 16 5 N -0.71 -17.20 5.39 -463.05 -2.50 -19.70 16 6 C 0.51 14.37 7.82 87.66 0.69 15.05 16 7 O -0.58 -21.18 15.56 -3.05 -0.05 -21.23 16 8 C -0.06 -1.29 6.28 29.10 0.18 -1.11 16 9 C 0.07 1.74 6.02 43.10 0.26 1.99 16 10 C -0.29 -6.19 10.72 21.99 0.24 -5.95 16 11 C 0.06 0.98 11.49 83.54 0.96 1.94 16 12 N -0.39 -8.22 4.01 -369.54 -1.48 -9.71 16 13 C 0.09 1.08 11.47 127.76 1.47 2.55 16 14 N -0.32 -9.30 11.92 -47.38 -0.56 -9.87 16 15 N -0.52 -14.77 3.89 -901.62 -3.51 -18.28 16 16 C 0.03 0.83 8.32 127.69 1.06 1.89 16 17 C 0.06 1.80 5.02 85.56 0.43 2.23 16 18 C 0.44 19.87 7.51 87.66 0.66 20.52 16 19 O -0.61 -31.81 13.88 -3.08 -0.04 -31.86 16 20 N -0.58 -28.46 5.29 -306.98 -1.62 -30.08 16 21 C -0.33 -18.04 9.68 84.04 0.81 -17.23 16 22 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 23 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 24 N -0.92 -48.99 13.05 21.66 0.28 -48.71 16 25 Si 0.99 42.44 29.55 68.60 2.03 44.47 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 28 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 29 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.07 1.20 6.91 -2.39 -0.02 1.18 16 31 H 0.06 1.14 6.42 -2.38 -0.02 1.12 16 32 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.05 1.36 6.71 -2.38 -0.02 1.34 16 34 H 0.42 9.40 8.14 -92.71 -0.75 8.65 16 35 H 0.13 2.41 8.12 -2.39 -0.02 2.39 16 36 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 38 H 0.21 1.58 8.06 -2.91 -0.02 1.56 16 39 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.06 2.23 5.88 -2.38 -0.01 2.21 16 43 H 0.07 1.94 6.40 -2.39 -0.02 1.92 16 44 H 0.03 0.92 6.46 -2.39 -0.02 0.91 16 45 H 0.11 3.01 7.93 -2.39 -0.02 2.99 16 46 H 0.07 1.90 7.06 -2.39 -0.02 1.88 16 47 H 0.40 18.57 7.90 -92.71 -0.73 17.84 16 48 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -80.01 395.75 0.42 -79.59 By element: Atomic # 1 Polarization: 41.75 SS G_CDS: -0.49 Total: 41.27 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: 8.36 Total: 24.09 kcal Atomic # 7 Polarization: -126.95 SS G_CDS: -9.39 Total: -136.34 kcal Atomic # 8 Polarization: -52.99 SS G_CDS: -0.09 Total: -53.08 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -80.01 0.42 -79.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734033600.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.443 kcal (2) G-P(sol) polarization free energy of solvation -80.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds