Wall clock time and date at job start Tue Mar 31 2020 20:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46496 * 109.47632 * 2 1 4 4 C 1.35035 * 124.88335 * 124.99212 * 3 2 1 5 5 C 1.35362 * 107.22645 * 179.72936 * 4 3 2 6 6 C 1.41504 * 105.50387 * 0.38612 * 5 4 3 7 7 C 1.47715 * 126.51783 * 179.87403 * 6 5 4 8 8 O 1.21566 * 119.99751 * 354.58494 * 7 6 5 9 9 N 1.34772 * 119.99821 * 174.30577 * 7 6 5 10 10 C 1.46505 * 120.00032 * 356.96751 * 9 7 6 11 11 C 1.46502 * 120.00158 * 176.95959 * 9 7 6 12 12 C 1.53007 * 109.46455 * 90.00270 * 11 9 7 13 13 H 1.09002 * 109.47197 * 65.00346 * 12 11 9 14 14 C 1.53005 * 109.46758 * 184.99984 * 12 11 9 15 15 N 1.46897 * 109.47146 * 305.00217 * 12 11 9 16 16 C 1.46899 * 110.99634 * 155.00478 * 15 12 11 17 17 C 1.50703 * 109.47094 * 180.02562 * 16 15 12 18 18 O 1.21295 * 119.99808 * 359.97438 * 17 16 15 19 19 N 1.34780 * 120.00337 * 179.97438 * 17 16 15 20 20 C 1.37091 * 120.00176 * 180.02562 * 19 17 16 21 21 H 1.08008 * 120.00142 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00100 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00149 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00209 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46920 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47097 * 120.00009 * 24 22 20 27 27 H 1.48497 * 109.47416 * 240.00252 * 24 22 20 28 28 N 1.28466 * 124.88417 * 304.98033 * 3 2 1 29 29 H 1.09010 * 109.47126 * 59.99999 * 1 2 3 30 30 H 1.09005 * 109.47582 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47457 * 299.99972 * 1 2 3 32 32 H 1.09003 * 109.47093 * 239.99683 * 2 1 3 33 33 H 1.09005 * 109.47156 * 120.00731 * 2 1 3 34 34 H 1.07999 * 126.38634 * 0.02562 * 4 3 2 35 35 H 1.07999 * 127.25066 * 180.27242 * 5 4 3 36 36 H 1.09002 * 109.46818 * 65.27285 * 10 9 7 37 37 H 1.09004 * 109.47048 * 185.26724 * 10 9 7 38 38 H 1.08992 * 109.47198 * 305.27031 * 10 9 7 39 39 H 1.08990 * 109.47339 * 210.00428 * 11 9 7 40 40 H 1.08998 * 109.46957 * 330.00989 * 11 9 7 41 41 H 1.09002 * 109.46971 * 60.00223 * 14 12 11 42 42 H 1.08996 * 109.46813 * 179.97438 * 14 12 11 43 43 H 1.08998 * 109.47344 * 300.00445 * 14 12 11 44 44 H 1.00893 * 111.00230 * 31.04687 * 15 12 11 45 45 H 1.09003 * 109.46873 * 299.99327 * 16 15 12 46 46 H 1.08996 * 109.47587 * 59.99666 * 16 15 12 47 47 H 0.97003 * 119.99535 * 359.97438 * 19 17 16 48 48 H 0.96992 * 120.00413 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8748 1.8974 0.9075 5 6 3.0876 3.1903 0.5676 6 6 2.3010 3.4121 -0.5876 7 6 2.1872 4.6757 -1.3442 8 8 2.7290 5.6824 -0.9310 9 7 1.4873 4.7110 -2.4954 10 6 0.8955 3.4825 -3.0309 11 6 1.3182 5.9780 -3.2113 12 6 2.4686 6.1604 -4.2035 13 1 2.4139 5.3868 -4.9695 14 6 2.3612 7.5378 -4.8611 15 7 3.7498 6.0557 -3.4925 16 6 4.8238 5.6354 -4.4023 17 6 6.1196 5.5386 -3.6389 18 8 6.1458 5.7951 -2.4537 19 7 7.2493 5.1671 -4.2732 20 6 8.4280 5.0786 -3.5786 21 1 8.4513 5.3069 -2.5232 22 6 9.5925 4.6951 -4.2323 23 7 9.5640 4.4168 -5.5163 24 14 11.1986 4.5752 -3.2861 25 1 10.9642 4.9371 -1.8650 26 1 11.7162 3.1854 -3.3636 27 1 12.1923 5.5070 -3.8772 28 7 1.6938 2.2752 -0.8634 29 1 -0.3634 0.5139 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8900 34 1 3.3124 1.3748 1.7452 35 1 3.7224 3.9031 1.0729 36 1 0.1238 3.1240 -2.3496 37 1 0.4529 3.6873 -4.0057 38 1 1.6693 2.7221 -3.1358 39 1 0.3713 5.9669 -3.7508 40 1 1.3201 6.8017 -2.4974 41 1 2.4159 8.3113 -4.0951 42 1 3.1809 7.6679 -5.5676 43 1 1.4105 7.6154 -5.3886 44 1 3.6764 5.4286 -2.7055 45 1 4.5796 4.6619 -4.8275 46 1 4.9278 6.3664 -5.2041 47 1 7.2282 4.9617 -5.2210 48 1 10.3770 4.1495 -5.9728 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734347742.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:07 Heat of formation + Delta-G solvation = 28.924053 kcal Electronic energy + Delta-G solvation = -30045.902318 eV Core-core repulsion = 25945.684098 eV Total energy + Delta-G solvation = -4100.218220 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.70793 -39.86251 -38.06522 -36.49032 -34.96723 -34.64311 -33.72936 -31.28691 -30.95785 -30.57151 -30.07727 -27.42913 -26.40865 -26.17355 -24.39685 -23.78566 -22.12060 -21.34321 -20.24906 -19.37527 -19.01390 -17.78491 -17.53193 -16.74811 -16.53595 -16.11802 -16.00281 -15.32990 -15.01924 -14.76568 -14.38881 -14.32580 -13.87421 -13.75938 -13.66972 -13.29636 -13.15434 -13.03196 -12.69566 -12.61526 -12.52682 -12.47620 -12.32389 -11.88390 -11.80939 -11.70365 -11.53521 -11.36500 -11.23763 -11.02990 -10.77791 -10.71900 -10.26469 -10.11425 -9.90283 -9.39898 -9.28317 -9.07092 -8.59095 -8.22854 -7.84685 -7.76136 -6.30743 -3.70536 1.59524 2.15403 2.28888 3.01265 3.23285 3.32623 3.41199 3.52442 4.06803 4.07692 4.22448 4.45393 4.47572 4.56027 4.67020 4.75592 4.99752 5.01947 5.08928 5.14314 5.20854 5.32867 5.35866 5.39210 5.46007 5.55746 5.58743 5.64220 5.68186 5.74800 5.84755 5.88240 5.90254 5.96589 6.14992 6.17619 6.33838 6.40366 6.48106 6.61308 6.69308 7.33762 7.52363 7.66104 7.82321 8.00848 8.19873 8.32323 8.75584 9.30667 9.68107 10.21653 10.87664 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009545 B = 0.003404 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.765558 B = 8223.668375 C =10190.438026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.117 3.883 3 N -0.286 5.286 4 C -0.022 4.022 5 C -0.170 4.170 6 C -0.014 4.014 7 C 0.593 3.407 8 O -0.495 6.495 9 N -0.616 5.616 10 C 0.093 3.907 11 C 0.115 3.885 12 C 0.066 3.934 13 H 0.039 0.961 14 C -0.137 4.137 15 N -0.658 5.658 16 C 0.050 3.950 17 C 0.443 3.557 18 O -0.571 6.571 19 N -0.570 5.570 20 C -0.293 4.293 21 H 0.103 0.897 22 C 0.019 3.981 23 N -0.906 5.906 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.283 1.283 27 H -0.282 1.282 28 N -0.258 5.258 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.181 0.819 35 H 0.164 0.836 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.052 0.948 44 H 0.356 0.644 45 H 0.035 0.965 46 H 0.084 0.916 47 H 0.391 0.609 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.482 -9.696 5.572 25.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.003 4.003 3 N -0.076 5.076 4 C -0.164 4.164 5 C -0.198 4.198 6 C -0.174 4.174 7 C 0.379 3.621 8 O -0.366 6.366 9 N -0.351 5.351 10 C -0.050 4.050 11 C -0.008 4.008 12 C -0.046 4.046 13 H 0.057 0.943 14 C -0.196 4.196 15 N -0.298 5.298 16 C -0.083 4.083 17 C 0.228 3.772 18 O -0.454 6.454 19 N -0.207 5.207 20 C -0.423 4.423 21 H 0.120 0.880 22 C -0.182 4.182 23 N -0.548 5.548 24 Si 0.755 3.245 25 H -0.192 1.192 26 H -0.209 1.209 27 H -0.208 1.208 28 N -0.095 5.095 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.198 0.802 35 H 0.182 0.818 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.181 0.819 45 H 0.053 0.947 46 H 0.102 0.898 47 H 0.224 0.776 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.655 -9.001 5.727 25.041 hybrid contribution 1.308 -1.071 0.070 1.692 sum -21.347 -10.072 5.797 24.305 Atomic orbital electron populations 1.22065 0.93238 1.03236 1.03828 1.21969 0.96506 0.77043 1.04782 1.45652 1.32670 1.10291 1.18938 1.22856 0.99363 0.95488 0.98742 1.21856 1.03598 0.96250 0.98109 1.21879 1.02876 0.93025 0.99581 1.17039 0.78569 0.86323 0.80133 1.90934 1.44191 1.33630 1.67827 1.47748 1.54133 1.09820 1.23433 1.21798 0.98788 0.85920 0.98539 1.21801 0.97570 0.86089 0.95322 1.21947 0.90223 0.97493 0.94915 0.94312 1.21745 1.00727 0.96543 1.00572 1.60231 1.01962 1.57769 1.09808 1.21726 0.92178 0.98579 0.95844 1.19885 0.84938 0.83914 0.88441 1.90563 1.85766 1.53539 1.15545 1.41865 1.06979 1.60244 1.11652 1.19758 0.84637 1.42287 0.95596 0.87956 1.25230 0.99585 0.97540 0.95807 1.69625 1.29363 1.47202 1.08594 0.85823 0.81275 0.77626 0.79764 1.19224 1.20912 1.20810 1.73614 1.22647 0.97985 1.15249 0.90837 0.90365 0.91906 0.88914 0.87971 0.80236 0.81833 0.91600 0.91324 0.91756 0.89890 0.88822 0.91628 0.92337 0.92946 0.81901 0.94693 0.89831 0.77626 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 10.02 37.15 0.37 -0.44 16 2 C 0.12 0.67 7.12 -4.05 -0.03 0.64 16 3 N -0.29 -2.94 3.41 -61.33 -0.21 -3.15 16 4 C -0.02 -0.24 11.40 -17.17 -0.20 -0.43 16 5 C -0.17 -2.45 10.81 -39.36 -0.43 -2.88 16 6 C -0.01 -0.21 6.85 -82.76 -0.57 -0.78 16 7 C 0.59 10.15 6.17 -12.39 -0.08 10.07 16 8 O -0.49 -10.31 14.90 5.31 0.08 -10.24 16 9 N -0.62 -8.52 2.66 -182.74 -0.49 -9.01 16 10 C 0.09 0.99 9.07 59.85 0.54 1.53 16 11 C 0.11 1.46 5.14 -4.04 -0.02 1.44 16 12 C 0.07 0.96 2.95 -67.71 -0.20 0.76 16 13 H 0.04 0.53 7.80 -51.93 -0.40 0.13 16 14 C -0.14 -1.75 9.42 37.16 0.35 -1.40 16 15 N -0.66 -13.07 5.78 -107.99 -0.62 -13.69 16 16 C 0.05 1.03 5.97 -4.98 -0.03 1.00 16 17 C 0.44 11.67 7.82 -10.98 -0.09 11.58 16 18 O -0.57 -17.29 15.78 5.54 0.09 -17.20 16 19 N -0.57 -15.57 5.29 -10.96 -0.06 -15.63 16 20 C -0.29 -8.66 9.68 -14.94 -0.14 -8.81 16 21 H 0.10 3.18 7.16 -52.48 -0.38 2.81 16 22 C 0.02 0.54 5.50 -17.47 -0.10 0.44 16 23 N -0.91 -25.70 13.05 55.50 0.72 -24.98 16 24 Si 0.93 21.98 29.55 -169.99 -5.02 16.95 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 N -0.26 -3.28 8.37 33.42 0.28 -3.00 16 29 H 0.07 0.45 8.09 -51.92 -0.42 0.03 16 30 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.32 8.04 -51.93 -0.42 -0.10 16 34 H 0.18 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.16 2.40 8.06 -52.49 -0.42 1.98 16 36 H 0.07 0.65 7.33 -51.93 -0.38 0.27 16 37 H 0.07 0.56 7.84 -51.93 -0.41 0.16 16 38 H 0.06 0.77 7.27 -51.93 -0.38 0.39 16 39 H 0.08 0.76 7.97 -51.93 -0.41 0.34 16 40 H 0.09 1.34 7.47 -51.93 -0.39 0.95 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.78 7.45 -51.93 -0.39 0.40 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.36 7.72 4.07 -39.30 -0.16 7.56 16 45 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 46 H 0.08 1.58 7.43 -51.93 -0.39 1.19 16 47 H 0.39 10.19 7.90 -40.82 -0.32 9.86 16 48 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 397.01 15.07 5.98 5.98 Total: -1.00 -38.11 397.01 -7.20 -45.31 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: -7.35 Total: 15.92 kcal Atomic # 6 Polarization: 13.32 SS G_CDS: -0.61 Total: 12.72 kcal Atomic # 7 Polarization: -69.08 SS G_CDS: -0.37 Total: -69.45 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: 0.17 Total: -27.44 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -38.11 -7.20 -45.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734347742.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.236 kcal (2) G-P(sol) polarization free energy of solvation -38.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds