Wall clock time and date at job start Tue Mar 31 2020 20:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46496 * 109.47632 * 2 1 4 4 C 1.35035 * 124.88335 * 124.99212 * 3 2 1 5 5 C 1.35362 * 107.22645 * 179.72936 * 4 3 2 6 6 C 1.41504 * 105.50387 * 0.38612 * 5 4 3 7 7 C 1.47715 * 126.51783 * 179.87403 * 6 5 4 8 8 O 1.21566 * 119.99751 * 354.58494 * 7 6 5 9 9 N 1.34772 * 119.99821 * 174.30577 * 7 6 5 10 10 C 1.46505 * 120.00032 * 356.96751 * 9 7 6 11 11 C 1.46502 * 120.00158 * 176.95959 * 9 7 6 12 12 C 1.53007 * 109.46455 * 90.00270 * 11 9 7 13 13 H 1.09002 * 109.47197 * 65.00346 * 12 11 9 14 14 C 1.53005 * 109.46758 * 184.99984 * 12 11 9 15 15 N 1.46897 * 109.47146 * 305.00217 * 12 11 9 16 16 C 1.46899 * 110.99634 * 155.00478 * 15 12 11 17 17 C 1.50703 * 109.47094 * 180.02562 * 16 15 12 18 18 O 1.21295 * 119.99808 * 359.97438 * 17 16 15 19 19 N 1.34780 * 120.00337 * 179.97438 * 17 16 15 20 20 C 1.37091 * 120.00176 * 180.02562 * 19 17 16 21 21 H 1.08008 * 120.00142 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00100 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00149 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00209 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46920 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47097 * 120.00009 * 24 22 20 27 27 H 1.48497 * 109.47416 * 240.00252 * 24 22 20 28 28 N 1.28466 * 124.88417 * 304.98033 * 3 2 1 29 29 H 1.09010 * 109.47126 * 59.99999 * 1 2 3 30 30 H 1.09005 * 109.47582 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47457 * 299.99972 * 1 2 3 32 32 H 1.09003 * 109.47093 * 239.99683 * 2 1 3 33 33 H 1.09005 * 109.47156 * 120.00731 * 2 1 3 34 34 H 1.07999 * 126.38634 * 0.02562 * 4 3 2 35 35 H 1.07999 * 127.25066 * 180.27242 * 5 4 3 36 36 H 1.09002 * 109.46818 * 65.27285 * 10 9 7 37 37 H 1.09004 * 109.47048 * 185.26724 * 10 9 7 38 38 H 1.08992 * 109.47198 * 305.27031 * 10 9 7 39 39 H 1.08990 * 109.47339 * 210.00428 * 11 9 7 40 40 H 1.08998 * 109.46957 * 330.00989 * 11 9 7 41 41 H 1.09002 * 109.46971 * 60.00223 * 14 12 11 42 42 H 1.08996 * 109.46813 * 179.97438 * 14 12 11 43 43 H 1.08998 * 109.47344 * 300.00445 * 14 12 11 44 44 H 1.00893 * 111.00230 * 31.04687 * 15 12 11 45 45 H 1.09003 * 109.46873 * 299.99327 * 16 15 12 46 46 H 1.08996 * 109.47587 * 59.99666 * 16 15 12 47 47 H 0.97003 * 119.99535 * 359.97438 * 19 17 16 48 48 H 0.96992 * 120.00413 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8748 1.8974 0.9075 5 6 3.0876 3.1903 0.5676 6 6 2.3010 3.4121 -0.5876 7 6 2.1872 4.6757 -1.3442 8 8 2.7290 5.6824 -0.9310 9 7 1.4873 4.7110 -2.4954 10 6 0.8955 3.4825 -3.0309 11 6 1.3182 5.9780 -3.2113 12 6 2.4686 6.1604 -4.2035 13 1 2.4139 5.3868 -4.9695 14 6 2.3612 7.5378 -4.8611 15 7 3.7498 6.0557 -3.4925 16 6 4.8238 5.6354 -4.4023 17 6 6.1196 5.5386 -3.6389 18 8 6.1458 5.7951 -2.4537 19 7 7.2493 5.1671 -4.2732 20 6 8.4280 5.0786 -3.5786 21 1 8.4513 5.3069 -2.5232 22 6 9.5925 4.6951 -4.2323 23 7 9.5640 4.4168 -5.5163 24 14 11.1986 4.5752 -3.2861 25 1 10.9642 4.9371 -1.8650 26 1 11.7162 3.1854 -3.3636 27 1 12.1923 5.5070 -3.8772 28 7 1.6938 2.2752 -0.8634 29 1 -0.3634 0.5139 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8900 34 1 3.3124 1.3748 1.7452 35 1 3.7224 3.9031 1.0729 36 1 0.1238 3.1240 -2.3496 37 1 0.4529 3.6873 -4.0057 38 1 1.6693 2.7221 -3.1358 39 1 0.3713 5.9669 -3.7508 40 1 1.3201 6.8017 -2.4974 41 1 2.4159 8.3113 -4.0951 42 1 3.1809 7.6679 -5.5676 43 1 1.4105 7.6154 -5.3886 44 1 3.6764 5.4286 -2.7055 45 1 4.5796 4.6619 -4.8275 46 1 4.9278 6.3664 -5.2041 47 1 7.2282 4.9617 -5.2210 48 1 10.3770 4.1495 -5.9728 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734347742.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:06 Heat of formation + Delta-G solvation = -0.297675 kcal Electronic energy + Delta-G solvation = -30047.169467 eV Core-core repulsion = 25945.684098 eV Total energy + Delta-G solvation = -4101.485370 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.63556 -41.08027 -40.07730 -37.83732 -36.23863 -35.84022 -35.37857 -33.32501 -32.35931 -31.62184 -30.88491 -28.40965 -28.00796 -27.40350 -25.83369 -25.02848 -23.06028 -22.18151 -21.39007 -21.17683 -20.32021 -19.93032 -18.46722 -18.06823 -17.73303 -17.36390 -17.11061 -16.81402 -16.49633 -16.25748 -15.96256 -15.58227 -15.32672 -14.93282 -14.90108 -14.50758 -14.31680 -14.14050 -14.08579 -13.68250 -13.50513 -13.46417 -13.35546 -13.24928 -12.95928 -12.94857 -12.89966 -12.58803 -12.47833 -12.40210 -12.24861 -12.12874 -11.96705 -11.72931 -11.54114 -11.17265 -10.36492 -10.20695 -10.07327 -10.03793 -9.66932 -9.25549 -8.48756 -5.97826 0.53078 1.17416 1.34254 1.38645 1.53487 1.54252 2.00269 2.01842 2.27878 2.34463 2.94481 3.17179 3.26111 3.49756 3.80299 3.91220 3.95476 4.06725 4.16916 4.19155 4.28059 4.28348 4.37921 4.39782 4.47535 4.50601 4.54234 4.69837 4.72521 4.76017 4.81813 4.87151 4.89555 4.95579 4.97451 5.08235 5.23699 5.32319 5.38164 5.40856 5.59574 5.89432 5.91068 6.16872 6.24919 6.48423 6.58716 6.84426 7.10462 7.14076 7.52280 8.09850 8.69235 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009545 B = 0.003404 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.765558 B = 8223.668375 C =10190.438026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.105 3.895 3 N -0.277 5.277 4 C 0.000 4.000 5 C -0.216 4.216 6 C -0.050 4.050 7 C 0.583 3.417 8 O -0.551 6.551 9 N -0.610 5.610 10 C 0.094 3.906 11 C 0.115 3.885 12 C 0.062 3.938 13 H 0.057 0.943 14 C -0.132 4.132 15 N -0.683 5.683 16 C 0.065 3.935 17 C 0.434 3.566 18 O -0.619 6.619 19 N -0.572 5.572 20 C -0.335 4.335 21 H 0.074 0.926 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.995 3.005 25 H -0.276 1.276 26 H -0.266 1.266 27 H -0.268 1.268 28 N -0.250 5.250 29 H 0.057 0.943 30 H 0.105 0.895 31 H 0.055 0.945 32 H 0.102 0.898 33 H 0.137 0.863 34 H 0.224 0.776 35 H 0.144 0.856 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.050 0.950 39 H 0.132 0.868 40 H 0.071 0.929 41 H 0.048 0.952 42 H 0.050 0.950 43 H 0.092 0.908 44 H 0.343 0.657 45 H 0.055 0.945 46 H 0.104 0.896 47 H 0.396 0.604 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.678 -12.124 4.343 26.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.013 4.013 3 N -0.067 5.067 4 C -0.143 4.143 5 C -0.244 4.244 6 C -0.208 4.208 7 C 0.371 3.629 8 O -0.427 6.427 9 N -0.343 5.343 10 C -0.048 4.048 11 C -0.007 4.007 12 C -0.048 4.048 13 H 0.075 0.925 14 C -0.191 4.191 15 N -0.322 5.322 16 C -0.068 4.068 17 C 0.221 3.779 18 O -0.505 6.505 19 N -0.210 5.210 20 C -0.464 4.464 21 H 0.092 0.908 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.818 3.182 25 H -0.201 1.201 26 H -0.191 1.191 27 H -0.193 1.193 28 N -0.088 5.088 29 H 0.076 0.924 30 H 0.123 0.877 31 H 0.074 0.926 32 H 0.121 0.879 33 H 0.155 0.845 34 H 0.240 0.760 35 H 0.162 0.838 36 H 0.092 0.908 37 H 0.121 0.879 38 H 0.069 0.931 39 H 0.150 0.850 40 H 0.089 0.911 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.110 0.890 44 H 0.167 0.833 45 H 0.073 0.927 46 H 0.122 0.878 47 H 0.230 0.770 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.902 -11.462 4.410 26.873 hybrid contribution 1.626 -0.428 0.434 1.736 sum -22.277 -11.890 4.844 25.712 Atomic orbital electron populations 1.22045 0.92498 1.04641 1.02696 1.22501 0.97158 0.74564 1.07047 1.46230 1.31442 1.11351 1.17687 1.23350 0.97902 0.94087 0.98958 1.21962 1.05109 0.98185 0.99149 1.21840 1.04835 0.93568 1.00581 1.17437 0.78237 0.86287 0.80959 1.90880 1.46743 1.35557 1.69494 1.47867 1.52892 1.11226 1.22364 1.21945 0.98355 0.84298 1.00240 1.21943 0.98999 0.85099 0.94706 1.22167 0.88202 0.99081 0.95334 0.92467 1.21732 1.02590 0.94774 0.99976 1.60268 1.04200 1.57681 1.10070 1.21590 0.89503 1.00282 0.95430 1.20925 0.86438 0.82290 0.88248 1.90531 1.86736 1.55333 1.17902 1.41904 1.06985 1.60345 1.11743 1.19686 0.86500 1.45254 0.94970 0.90801 1.26062 1.02312 0.96018 0.96799 1.69679 1.30798 1.46197 1.09432 0.84858 0.76930 0.78547 0.77884 1.20074 1.19133 1.19293 1.73559 1.22149 0.97462 1.15668 0.92366 0.87665 0.92615 0.87941 0.84478 0.75987 0.83826 0.90848 0.87924 0.93135 0.85036 0.91060 0.93331 0.93111 0.88965 0.83284 0.92739 0.87766 0.77021 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 10.02 71.98 0.72 -0.44 16 2 C 0.11 0.89 7.12 86.38 0.61 1.50 16 3 N -0.28 -5.31 3.41 -347.96 -1.19 -6.50 16 4 C 0.00 0.00 11.40 83.54 0.95 0.95 16 5 C -0.22 -6.68 10.81 22.41 0.24 -6.44 16 6 C -0.05 -1.64 6.85 42.46 0.29 -1.35 16 7 C 0.58 21.29 6.17 86.75 0.54 21.83 16 8 O -0.55 -25.17 14.90 -3.92 -0.06 -25.23 16 9 N -0.61 -16.88 2.66 -850.34 -2.26 -19.14 16 10 C 0.09 1.85 9.07 127.77 1.16 3.01 16 11 C 0.11 2.81 5.14 86.38 0.44 3.26 16 12 C 0.06 1.74 2.95 44.92 0.13 1.87 16 13 H 0.06 1.41 7.80 -2.39 -0.02 1.39 16 14 C -0.13 -3.15 9.42 71.98 0.68 -2.47 16 15 N -0.68 -27.79 5.78 -495.56 -2.86 -30.65 16 16 C 0.06 2.69 5.97 85.56 0.51 3.20 16 17 C 0.43 23.77 7.82 87.66 0.69 24.46 16 18 O -0.62 -39.78 15.78 -3.08 -0.05 -39.83 16 19 N -0.57 -32.26 5.29 -306.98 -1.62 -33.88 16 20 C -0.33 -20.45 9.68 84.04 0.81 -19.64 16 21 H 0.07 4.86 7.16 -2.91 -0.02 4.84 16 22 C -0.01 -0.70 5.50 84.92 0.47 -0.23 16 23 N -0.92 -51.67 13.05 21.66 0.28 -51.39 16 24 Si 0.99 45.01 29.55 68.60 2.03 47.03 16 25 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 27 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 28 N -0.25 -6.33 8.37 -48.17 -0.40 -6.73 16 29 H 0.06 0.62 8.09 -2.38 -0.02 0.60 16 30 H 0.10 0.22 8.14 -2.38 -0.02 0.20 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.14 0.25 8.04 -2.38 -0.02 0.23 16 34 H 0.22 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.14 4.84 8.06 -2.91 -0.02 4.81 16 36 H 0.07 1.35 7.33 -2.39 -0.02 1.33 16 37 H 0.10 1.32 7.84 -2.38 -0.02 1.30 16 38 H 0.05 1.16 7.27 -2.39 -0.02 1.14 16 39 H 0.13 1.92 7.97 -2.39 -0.02 1.90 16 40 H 0.07 2.10 7.47 -2.39 -0.02 2.08 16 41 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.05 1.28 7.45 -2.39 -0.02 1.26 16 43 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.34 15.67 4.07 -89.70 -0.36 15.30 16 45 H 0.05 2.05 8.06 -2.39 -0.02 2.03 16 46 H 0.10 3.87 7.43 -2.39 -0.02 3.86 16 47 H 0.40 21.01 7.90 -92.71 -0.73 20.28 16 48 H 0.28 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -89.74 397.01 2.00 -87.74 By element: Atomic # 1 Polarization: 49.19 SS G_CDS: -0.11 Total: 49.08 kcal Atomic # 6 Polarization: 21.24 SS G_CDS: 8.25 Total: 29.49 kcal Atomic # 7 Polarization: -140.23 SS G_CDS: -8.05 Total: -148.29 kcal Atomic # 8 Polarization: -64.95 SS G_CDS: -0.11 Total: -65.05 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -89.74 2.00 -87.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734347742.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.441 kcal (2) G-P(sol) polarization free energy of solvation -89.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds