Wall clock time and date at job start Tue Mar 31 2020 20:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46505 * 109.46967 * 2 1 4 4 C 1.35030 * 124.88427 * 124.99763 * 3 2 1 5 5 C 1.35369 * 107.22901 * 180.23807 * 4 3 2 6 6 C 1.41508 * 105.49968 * 359.60647 * 5 4 3 7 7 C 1.47712 * 126.51719 * 180.14676 * 6 5 4 8 8 O 1.21568 * 119.99523 * 353.67160 * 7 6 5 9 9 N 1.34776 * 119.99984 * 173.67201 * 7 6 5 10 10 C 1.46505 * 119.99825 * 4.26316 * 9 7 6 11 11 C 1.46492 * 119.99888 * 184.26232 * 9 7 6 12 12 C 1.53005 * 109.47152 * 85.25117 * 11 9 7 13 13 H 1.09001 * 109.46504 * 298.06603 * 12 11 9 14 14 C 1.53002 * 109.47221 * 178.06832 * 12 11 9 15 15 N 1.46894 * 109.47380 * 58.06324 * 12 11 9 16 16 C 1.46897 * 111.00302 * 207.40637 * 15 12 11 17 17 C 1.50700 * 109.47287 * 179.97438 * 16 15 12 18 18 O 1.21298 * 119.99977 * 0.02562 * 17 16 15 19 19 N 1.34780 * 120.00033 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99678 * 179.97438 * 19 17 16 21 21 H 1.07995 * 120.00370 * 0.02562 * 20 19 17 22 22 C 1.38952 * 119.99626 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00009 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99907 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47175 * 60.00264 * 24 22 20 26 26 H 1.48500 * 109.47277 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47408 * 300.00062 * 24 22 20 28 28 N 1.28466 * 124.88388 * 304.97424 * 3 2 1 29 29 H 1.08993 * 109.47066 * 300.00028 * 1 2 3 30 30 H 1.08997 * 109.46755 * 60.00408 * 1 2 3 31 31 H 1.09005 * 109.46887 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47429 * 240.00025 * 2 1 3 33 33 H 1.09007 * 109.47274 * 119.99696 * 2 1 3 34 34 H 1.07999 * 126.38758 * 359.97438 * 4 3 2 35 35 H 1.07994 * 127.25079 * 179.73938 * 5 4 3 36 36 H 1.08996 * 109.47169 * 86.55098 * 10 9 7 37 37 H 1.09000 * 109.46661 * 206.55554 * 10 9 7 38 38 H 1.08994 * 109.47056 * 326.55052 * 10 9 7 39 39 H 1.09003 * 109.47309 * 205.24314 * 11 9 7 40 40 H 1.08999 * 109.47573 * 325.24992 * 11 9 7 41 41 H 1.08998 * 109.47169 * 59.99515 * 14 12 11 42 42 H 1.09004 * 109.47077 * 179.97438 * 14 12 11 43 43 H 1.09001 * 109.46349 * 299.99704 * 14 12 11 44 44 H 1.00911 * 110.99876 * 331.36337 * 15 12 11 45 45 H 1.08994 * 109.47129 * 300.00243 * 16 15 12 46 46 H 1.09009 * 109.47102 * 60.00624 * 16 15 12 47 47 H 0.96999 * 120.00109 * 0.02562 * 19 17 16 48 48 H 0.97001 * 120.00036 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8747 1.8976 0.9074 5 6 3.0785 3.1937 0.5741 6 6 2.3009 3.4122 -0.5878 7 6 2.1866 4.6758 -1.3442 8 8 2.7051 5.6889 -0.9169 9 7 1.5075 4.7055 -2.5080 10 6 0.8042 3.5087 -2.9763 11 6 1.4727 5.9344 -3.3045 12 6 2.7110 5.9964 -4.2011 13 1 3.6072 6.0245 -3.5812 14 6 2.6507 7.2558 -5.0678 15 7 2.7501 4.8089 -5.0649 16 6 4.1309 4.4753 -5.4392 17 6 4.1309 3.2544 -6.3226 18 8 3.0836 2.7154 -6.6123 19 7 5.2946 2.7620 -6.7916 20 6 5.2946 1.6510 -7.5949 21 1 4.3622 1.1706 -7.8522 22 6 6.4944 1.1430 -8.0780 23 7 7.6290 1.7273 -7.7645 24 14 6.4944 -0.3703 -9.1730 25 1 5.7022 -0.0946 -10.3985 26 1 7.8902 -0.7071 -9.5519 27 1 5.8909 -1.5119 -8.4398 28 7 1.6937 2.2753 -0.8635 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 3.3119 1.3753 1.7455 35 1 3.7046 3.9096 1.0859 36 1 -0.1952 3.4814 -2.5422 37 1 0.7277 3.5344 -4.0634 38 1 1.3569 2.6200 -2.6720 39 1 0.5755 5.9409 -3.9235 40 1 1.4619 6.7982 -2.6398 41 1 2.6216 8.1369 -4.4269 42 1 3.5331 7.3001 -5.7062 43 1 1.7544 7.2276 -5.6876 44 1 2.2960 4.0242 -4.6217 45 1 4.5740 5.3134 -5.9770 46 1 4.7123 4.2724 -4.5397 47 1 6.1321 3.1933 -6.5603 48 1 8.4665 1.3725 -8.1015 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734347743.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:09 Heat of formation + Delta-G solvation = 26.184260 kcal Electronic energy + Delta-G solvation = -29814.913117 eV Core-core repulsion = 25714.576090 eV Total energy + Delta-G solvation = -4100.337027 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.83325 -39.81467 -38.25318 -36.78832 -34.94519 -34.60301 -33.82951 -31.42476 -31.08578 -30.71960 -30.14710 -27.29307 -26.74367 -26.10162 -24.46198 -23.77027 -22.19870 -21.42223 -20.58057 -19.35155 -19.14318 -17.85575 -17.60265 -16.80075 -16.54436 -16.16975 -16.10027 -15.40196 -15.13256 -14.80437 -14.54635 -14.41312 -14.00020 -13.87999 -13.73002 -13.50966 -13.31839 -12.83112 -12.74167 -12.69728 -12.55339 -12.50644 -12.38068 -11.83857 -11.78356 -11.74510 -11.61527 -11.58009 -11.29758 -11.05662 -10.83445 -10.53856 -10.43113 -10.18842 -10.07638 -9.47159 -9.40216 -9.21982 -8.64873 -8.37961 -7.98624 -7.91573 -6.38570 -3.79422 1.48238 1.99811 2.21596 2.97292 3.20961 3.26390 3.30723 3.37520 3.95558 4.03681 4.14080 4.38768 4.46581 4.49915 4.57836 4.76841 4.91439 4.98819 5.12778 5.19391 5.27291 5.29890 5.34609 5.36638 5.47105 5.50601 5.60371 5.61202 5.68093 5.69752 5.81902 5.87910 5.93523 5.98975 6.08778 6.15057 6.24750 6.31374 6.39814 6.54609 6.67179 7.25292 7.36698 7.57321 7.73293 7.79055 8.09458 8.15431 8.65046 9.20619 9.58195 10.09917 10.79244 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008979 B = 0.003318 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3117.684650 B = 8436.315548 C =10401.895701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.114 3.886 3 N -0.283 5.283 4 C -0.019 4.019 5 C -0.180 4.180 6 C -0.017 4.017 7 C 0.602 3.398 8 O -0.535 6.535 9 N -0.605 5.605 10 C 0.063 3.937 11 C 0.114 3.886 12 C 0.064 3.936 13 H 0.048 0.952 14 C -0.136 4.136 15 N -0.665 5.665 16 C 0.050 3.950 17 C 0.443 3.557 18 O -0.584 6.584 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.275 1.275 28 N -0.251 5.251 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.181 0.819 35 H 0.161 0.839 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.348 0.652 45 H 0.086 0.914 46 H 0.040 0.960 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.627 0.884 18.499 21.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.006 4.006 3 N -0.072 5.072 4 C -0.161 4.161 5 C -0.208 4.208 6 C -0.176 4.176 7 C 0.389 3.611 8 O -0.410 6.410 9 N -0.337 5.337 10 C -0.080 4.080 11 C -0.009 4.009 12 C -0.047 4.047 13 H 0.066 0.934 14 C -0.194 4.194 15 N -0.301 5.301 16 C -0.082 4.082 17 C 0.229 3.771 18 O -0.468 6.468 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.200 1.200 28 N -0.087 5.087 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.198 0.802 35 H 0.178 0.822 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.171 0.829 45 H 0.104 0.896 46 H 0.058 0.942 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.774 0.717 17.147 21.394 hybrid contribution 1.641 -0.694 0.951 2.020 sum -11.132 0.022 18.098 21.248 Atomic orbital electron populations 1.22071 0.93027 1.03457 1.03883 1.22051 0.96744 0.76760 1.05018 1.45809 1.32192 1.10555 1.18625 1.22871 0.99305 0.95336 0.98604 1.21743 1.04665 0.96116 0.98233 1.21893 1.03227 0.93097 0.99400 1.17023 0.78144 0.85954 0.79993 1.90771 1.47845 1.33649 1.68774 1.47745 1.51126 1.13745 1.21111 1.22386 0.97228 0.87863 1.00572 1.21792 0.98882 0.86856 0.93332 1.21960 0.97464 0.92517 0.92774 0.93370 1.21718 1.02909 0.95275 0.99499 1.60345 1.16237 1.07759 1.45733 1.21714 0.90174 0.98129 0.98231 1.19823 0.84802 0.86926 0.85581 1.90498 1.31405 1.62354 1.62591 1.41860 1.06988 1.26910 1.44335 1.19650 0.94662 1.04087 1.24485 0.88012 1.25257 0.94695 0.99476 0.98524 1.69612 0.97854 1.41178 1.45710 0.85924 0.77034 0.81129 0.80148 1.19874 1.20987 1.20001 1.73646 1.22457 0.98040 1.14587 0.91980 0.90605 0.90190 0.88517 0.87911 0.80226 0.82156 0.92559 0.90030 0.88042 0.89222 0.89273 0.92666 0.92290 0.91835 0.82930 0.89621 0.94240 0.77473 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 10.02 37.16 0.37 -0.56 16 2 C 0.11 0.69 7.12 -4.04 -0.03 0.67 16 3 N -0.28 -2.81 3.41 -61.32 -0.21 -3.02 16 4 C -0.02 -0.17 11.40 -17.17 -0.20 -0.37 16 5 C -0.18 -2.15 10.81 -39.36 -0.43 -2.58 16 6 C -0.02 -0.24 6.83 -82.76 -0.57 -0.80 16 7 C 0.60 9.38 7.65 -12.39 -0.09 9.29 16 8 O -0.54 -9.48 16.56 5.31 0.09 -9.40 16 9 N -0.60 -8.43 2.57 -182.75 -0.47 -8.90 16 10 C 0.06 0.80 8.65 59.85 0.52 1.32 16 11 C 0.11 1.48 5.04 -4.04 -0.02 1.46 16 12 C 0.06 0.94 2.90 -67.71 -0.20 0.74 16 13 H 0.05 0.78 7.76 -51.93 -0.40 0.38 16 14 C -0.14 -1.72 9.45 37.16 0.35 -1.37 16 15 N -0.66 -11.77 5.94 -107.99 -0.64 -12.42 16 16 C 0.05 0.99 5.96 -4.98 -0.03 0.96 16 17 C 0.44 10.94 7.82 -10.98 -0.09 10.86 16 18 O -0.58 -16.17 15.78 5.54 0.09 -16.08 16 19 N -0.56 -14.83 5.29 -10.96 -0.06 -14.88 16 20 C -0.30 -8.51 9.68 -14.93 -0.14 -8.66 16 21 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -25.02 13.05 55.50 0.72 -24.30 16 24 Si 0.93 21.28 29.55 -169.99 -5.02 16.25 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 N -0.25 -3.17 8.14 33.42 0.27 -2.90 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.10 0.32 8.04 -51.93 -0.42 -0.10 16 34 H 0.18 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.16 1.76 8.06 -52.49 -0.42 1.33 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 1.10 6.49 -51.93 -0.34 0.76 16 38 H 0.10 1.41 5.11 -51.93 -0.27 1.15 16 39 H 0.09 1.02 8.04 -51.93 -0.42 0.60 16 40 H 0.09 1.12 7.51 -51.93 -0.39 0.73 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.79 7.62 -51.93 -0.40 0.39 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.35 6.34 4.57 -39.29 -0.18 6.16 16 45 H 0.09 1.56 7.61 -51.93 -0.40 1.16 16 46 H 0.04 0.75 8.05 -51.92 -0.42 0.33 16 47 H 0.39 9.94 7.90 -40.82 -0.32 9.62 16 48 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 397.65 15.07 5.99 5.99 Total: -1.00 -35.30 397.65 -7.13 -42.43 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: -7.25 Total: 15.76 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: -0.64 Total: 11.45 kcal Atomic # 7 Polarization: -66.03 SS G_CDS: -0.38 Total: -66.41 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: 0.18 Total: -25.47 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.30 -7.13 -42.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734347743.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.614 kcal (2) G-P(sol) polarization free energy of solvation -35.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds