Wall clock time and date at job start Tue Mar 31 2020 20:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46505 * 109.46967 * 2 1 4 4 C 1.35030 * 124.88427 * 124.99763 * 3 2 1 5 5 C 1.35369 * 107.22901 * 180.23807 * 4 3 2 6 6 C 1.41508 * 105.49968 * 359.60647 * 5 4 3 7 7 C 1.47712 * 126.51719 * 180.14676 * 6 5 4 8 8 O 1.21568 * 119.99523 * 353.67160 * 7 6 5 9 9 N 1.34776 * 119.99984 * 173.67201 * 7 6 5 10 10 C 1.46505 * 119.99825 * 4.26316 * 9 7 6 11 11 C 1.46492 * 119.99888 * 184.26232 * 9 7 6 12 12 C 1.53005 * 109.47152 * 85.25117 * 11 9 7 13 13 H 1.09001 * 109.46504 * 298.06603 * 12 11 9 14 14 C 1.53002 * 109.47221 * 178.06832 * 12 11 9 15 15 N 1.46894 * 109.47380 * 58.06324 * 12 11 9 16 16 C 1.46897 * 111.00302 * 207.40637 * 15 12 11 17 17 C 1.50700 * 109.47287 * 179.97438 * 16 15 12 18 18 O 1.21298 * 119.99977 * 0.02562 * 17 16 15 19 19 N 1.34780 * 120.00033 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99678 * 179.97438 * 19 17 16 21 21 H 1.07995 * 120.00370 * 0.02562 * 20 19 17 22 22 C 1.38952 * 119.99626 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00009 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99907 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47175 * 60.00264 * 24 22 20 26 26 H 1.48500 * 109.47277 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47408 * 300.00062 * 24 22 20 28 28 N 1.28466 * 124.88388 * 304.97424 * 3 2 1 29 29 H 1.08993 * 109.47066 * 300.00028 * 1 2 3 30 30 H 1.08997 * 109.46755 * 60.00408 * 1 2 3 31 31 H 1.09005 * 109.46887 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47429 * 240.00025 * 2 1 3 33 33 H 1.09007 * 109.47274 * 119.99696 * 2 1 3 34 34 H 1.07999 * 126.38758 * 359.97438 * 4 3 2 35 35 H 1.07994 * 127.25079 * 179.73938 * 5 4 3 36 36 H 1.08996 * 109.47169 * 86.55098 * 10 9 7 37 37 H 1.09000 * 109.46661 * 206.55554 * 10 9 7 38 38 H 1.08994 * 109.47056 * 326.55052 * 10 9 7 39 39 H 1.09003 * 109.47309 * 205.24314 * 11 9 7 40 40 H 1.08999 * 109.47573 * 325.24992 * 11 9 7 41 41 H 1.08998 * 109.47169 * 59.99515 * 14 12 11 42 42 H 1.09004 * 109.47077 * 179.97438 * 14 12 11 43 43 H 1.09001 * 109.46349 * 299.99704 * 14 12 11 44 44 H 1.00911 * 110.99876 * 331.36337 * 15 12 11 45 45 H 1.08994 * 109.47129 * 300.00243 * 16 15 12 46 46 H 1.09009 * 109.47102 * 60.00624 * 16 15 12 47 47 H 0.96999 * 120.00109 * 0.02562 * 19 17 16 48 48 H 0.97001 * 120.00036 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8747 1.8976 0.9074 5 6 3.0785 3.1937 0.5741 6 6 2.3009 3.4122 -0.5878 7 6 2.1866 4.6758 -1.3442 8 8 2.7051 5.6889 -0.9169 9 7 1.5075 4.7055 -2.5080 10 6 0.8042 3.5087 -2.9763 11 6 1.4727 5.9344 -3.3045 12 6 2.7110 5.9964 -4.2011 13 1 3.6072 6.0245 -3.5812 14 6 2.6507 7.2558 -5.0678 15 7 2.7501 4.8089 -5.0649 16 6 4.1309 4.4753 -5.4392 17 6 4.1309 3.2544 -6.3226 18 8 3.0836 2.7154 -6.6123 19 7 5.2946 2.7620 -6.7916 20 6 5.2946 1.6510 -7.5949 21 1 4.3622 1.1706 -7.8522 22 6 6.4944 1.1430 -8.0780 23 7 7.6290 1.7273 -7.7645 24 14 6.4944 -0.3703 -9.1730 25 1 5.7022 -0.0946 -10.3985 26 1 7.8902 -0.7071 -9.5519 27 1 5.8909 -1.5119 -8.4398 28 7 1.6937 2.2753 -0.8635 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 3.3119 1.3753 1.7455 35 1 3.7046 3.9096 1.0859 36 1 -0.1952 3.4814 -2.5422 37 1 0.7277 3.5344 -4.0634 38 1 1.3569 2.6200 -2.6720 39 1 0.5755 5.9409 -3.9235 40 1 1.4619 6.7982 -2.6398 41 1 2.6216 8.1369 -4.4269 42 1 3.5331 7.3001 -5.7062 43 1 1.7544 7.2276 -5.6876 44 1 2.2960 4.0242 -4.6217 45 1 4.5740 5.3134 -5.9770 46 1 4.7123 4.2724 -4.5397 47 1 6.1321 3.1933 -6.5603 48 1 8.4665 1.3725 -8.1015 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734347743.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:08 Heat of formation + Delta-G solvation = 0.707773 kcal Electronic energy + Delta-G solvation = -29816.017860 eV Core-core repulsion = 25714.576090 eV Total energy + Delta-G solvation = -4101.441770 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.66460 -40.98701 -40.13784 -38.14251 -36.15116 -35.81141 -35.38495 -33.32812 -32.48781 -31.66792 -30.91752 -28.37484 -28.19077 -27.43216 -25.89618 -24.96120 -23.06814 -22.19973 -21.72201 -21.15814 -20.30799 -19.93838 -18.47383 -18.01354 -17.71403 -17.34491 -17.20513 -16.94033 -16.51076 -16.30904 -15.98523 -15.62599 -15.35357 -15.14692 -14.94179 -14.59401 -14.36956 -14.11683 -13.97020 -13.82452 -13.62126 -13.47570 -13.33620 -13.30787 -12.97674 -12.92779 -12.84253 -12.80565 -12.56589 -12.43987 -12.26001 -12.12656 -12.02295 -11.55826 -11.51786 -11.20638 -10.38322 -10.24628 -10.09498 -10.04662 -9.73777 -9.43295 -8.47904 -5.97625 0.49163 1.18727 1.38773 1.40700 1.51163 1.52335 1.96032 2.00294 2.27383 2.29419 2.85553 3.18354 3.24655 3.45430 3.72086 3.86063 3.95897 4.04825 4.10315 4.17731 4.24024 4.27758 4.36177 4.36364 4.40823 4.48557 4.57216 4.61163 4.70451 4.74840 4.78183 4.80618 4.87882 4.92188 4.98820 5.03881 5.22586 5.26940 5.38423 5.39655 5.53165 5.83928 5.92241 6.03926 6.18248 6.36279 6.56527 6.81003 7.07046 7.09131 7.51573 8.06008 8.69491 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008979 B = 0.003318 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3117.684650 B = 8436.315548 C =10401.895701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.104 3.896 3 N -0.280 5.280 4 C 0.001 3.999 5 C -0.207 4.207 6 C -0.052 4.052 7 C 0.595 3.405 8 O -0.567 6.567 9 N -0.604 5.604 10 C 0.071 3.929 11 C 0.115 3.885 12 C 0.067 3.933 13 H 0.031 0.969 14 C -0.131 4.131 15 N -0.670 5.670 16 C 0.064 3.936 17 C 0.440 3.560 18 O -0.617 6.617 19 N -0.572 5.572 20 C -0.336 4.336 21 H 0.082 0.918 22 C -0.013 4.013 23 N -0.922 5.922 24 Si 0.996 3.004 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.270 1.270 28 N -0.265 5.265 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.143 0.857 34 H 0.226 0.774 35 H 0.162 0.838 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.051 0.949 43 H 0.068 0.932 44 H 0.343 0.657 45 H 0.103 0.897 46 H 0.045 0.955 47 H 0.395 0.605 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.762 -0.327 19.311 22.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.014 4.014 3 N -0.069 5.069 4 C -0.141 4.141 5 C -0.235 4.235 6 C -0.209 4.209 7 C 0.383 3.617 8 O -0.446 6.446 9 N -0.335 5.335 10 C -0.072 4.072 11 C -0.007 4.007 12 C -0.044 4.044 13 H 0.049 0.951 14 C -0.189 4.189 15 N -0.305 5.305 16 C -0.069 4.069 17 C 0.227 3.773 18 O -0.503 6.503 19 N -0.209 5.209 20 C -0.465 4.465 21 H 0.100 0.900 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.819 3.181 25 H -0.196 1.196 26 H -0.195 1.195 27 H -0.195 1.195 28 N -0.102 5.102 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.161 0.839 34 H 0.243 0.757 35 H 0.179 0.821 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.126 0.874 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.166 0.834 45 H 0.121 0.879 46 H 0.063 0.937 47 H 0.228 0.772 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.916 -0.481 17.954 22.122 hybrid contribution 1.659 -0.372 0.752 1.859 sum -11.256 -0.853 18.706 21.848 Atomic orbital electron populations 1.22041 0.92751 1.04554 1.02656 1.22474 0.97051 0.74942 1.06905 1.46278 1.31535 1.11298 1.17823 1.23491 0.97622 0.94359 0.98677 1.21979 1.05442 0.97792 0.98256 1.21900 1.05174 0.93189 1.00674 1.17353 0.77752 0.86299 0.80312 1.90727 1.49306 1.34815 1.69706 1.47832 1.50699 1.14243 1.20765 1.22326 0.97800 0.87156 0.99947 1.21861 0.98778 0.86838 0.93250 1.22038 0.97607 0.92006 0.92717 0.95057 1.21696 1.02777 0.94941 0.99470 1.60420 1.14827 1.08538 1.46753 1.21562 0.91716 0.96130 0.97474 1.20654 0.83813 0.87658 0.85125 1.90466 1.32418 1.63661 1.63767 1.41929 1.07578 1.26810 1.44550 1.19674 0.94570 1.05656 1.26599 0.90029 1.26102 0.93886 1.02093 0.99209 1.69685 0.98350 1.42223 1.45983 0.84950 0.77673 0.77347 0.78130 1.19581 1.19477 1.19465 1.73578 1.22874 0.98155 1.15616 0.92119 0.92865 0.87920 0.88715 0.83945 0.75722 0.82070 0.90805 0.90777 0.89099 0.87361 0.88682 0.90425 0.93020 0.91321 0.83443 0.87918 0.93662 0.77194 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 10.02 71.98 0.72 -0.83 16 2 C 0.10 1.03 7.12 86.38 0.61 1.64 16 3 N -0.28 -5.15 3.41 -347.92 -1.19 -6.34 16 4 C 0.00 0.02 11.40 83.54 0.95 0.98 16 5 C -0.21 -4.92 10.81 22.41 0.24 -4.67 16 6 C -0.05 -1.49 6.83 42.46 0.29 -1.20 16 7 C 0.59 19.12 7.65 86.75 0.66 19.79 16 8 O -0.57 -20.82 16.56 -3.93 -0.07 -20.88 16 9 N -0.60 -17.07 2.57 -850.36 -2.18 -19.26 16 10 C 0.07 1.83 8.65 127.77 1.11 2.94 16 11 C 0.12 2.93 5.04 86.38 0.44 3.37 16 12 C 0.07 1.94 2.90 44.92 0.13 2.07 16 13 H 0.03 1.03 7.76 -2.39 -0.02 1.01 16 14 C -0.13 -3.14 9.45 71.98 0.68 -2.46 16 15 N -0.67 -23.76 5.94 -495.58 -2.94 -26.71 16 16 C 0.06 2.52 5.96 85.56 0.51 3.03 16 17 C 0.44 22.17 7.82 87.66 0.69 22.85 16 18 O -0.62 -34.95 15.78 -3.08 -0.05 -35.00 16 19 N -0.57 -30.66 5.29 -306.97 -1.62 -32.28 16 20 C -0.34 -19.45 9.68 84.04 0.81 -18.63 16 21 H 0.08 4.98 7.16 -2.91 -0.02 4.95 16 22 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 23 N -0.92 -50.78 13.05 21.66 0.28 -50.50 16 24 Si 1.00 43.14 29.55 68.60 2.03 45.17 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 27 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 28 N -0.26 -6.69 8.14 -48.17 -0.39 -7.08 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.76 8.08 -2.39 -0.02 0.74 16 31 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.14 0.29 8.04 -2.38 -0.02 0.27 16 34 H 0.23 1.37 8.06 -2.91 -0.02 1.34 16 35 H 0.16 3.61 8.06 -2.91 -0.02 3.59 16 36 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.07 2.03 6.49 -2.39 -0.02 2.01 16 38 H 0.09 2.61 5.11 -2.39 -0.01 2.60 16 39 H 0.11 2.34 8.04 -2.39 -0.02 2.32 16 40 H 0.09 2.34 7.51 -2.39 -0.02 2.33 16 41 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.05 1.32 7.62 -2.38 -0.02 1.30 16 43 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.34 12.70 4.57 -89.69 -0.41 12.29 16 45 H 0.10 3.70 7.61 -2.39 -0.02 3.68 16 46 H 0.05 1.74 8.05 -2.38 -0.02 1.72 16 47 H 0.39 20.38 7.90 -92.71 -0.73 19.64 16 48 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -78.07 397.65 2.03 -76.04 By element: Atomic # 1 Polarization: 48.39 SS G_CDS: -0.15 Total: 48.23 kcal Atomic # 6 Polarization: 20.29 SS G_CDS: 8.31 Total: 28.61 kcal Atomic # 7 Polarization: -134.12 SS G_CDS: -8.05 Total: -142.16 kcal Atomic # 8 Polarization: -55.77 SS G_CDS: -0.11 Total: -55.89 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -78.07 2.03 -76.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734347743.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.748 kcal (2) G-P(sol) polarization free energy of solvation -78.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds