Wall clock time and date at job start Tue Mar 31 2020 19:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47856 * 2 1 4 4 N 1.46502 * 109.47055 * 120.00584 * 2 1 3 5 5 C 1.36946 * 119.99451 * 274.99490 * 4 2 1 6 6 H 1.07995 * 120.00058 * 0.02562 * 5 4 2 7 7 C 1.38811 * 119.99508 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00440 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99850 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46887 * 89.99755 * 9 7 5 11 11 H 1.48494 * 109.47253 * 210.00119 * 9 7 5 12 12 H 1.48498 * 109.47207 * 330.00341 * 9 7 5 13 13 C 1.52999 * 109.47124 * 239.99850 * 2 1 3 14 14 H 1.09010 * 109.69857 * 58.46756 * 13 2 1 15 15 C 1.52756 * 109.51532 * 298.35017 * 13 2 1 16 16 C 1.53034 * 109.38822 * 185.70417 * 15 13 2 17 17 C 1.53034 * 109.53913 * 61.23700 * 16 15 13 18 18 C 1.53188 * 109.31691 * 298.63811 * 17 16 15 19 19 N 1.46923 * 108.77489 * 54.63065 * 18 17 16 20 20 C 1.34773 * 120.63021 * 126.37308 * 19 18 17 21 21 O 1.21287 * 119.99948 * 174.31631 * 20 19 18 22 22 C 1.50703 * 120.00312 * 354.31421 * 20 19 18 23 23 N 1.46497 * 109.47244 * 180.02562 * 22 20 19 24 24 N 1.40176 * 126.34705 * 270.02164 * 23 22 20 25 25 C 1.29394 * 108.13724 * 179.97438 * 24 23 22 26 26 N 1.37358 * 108.83386 * 0.02562 * 25 24 23 27 27 C 1.46501 * 125.83208 * 180.02562 * 26 25 24 28 28 C 1.34813 * 108.33293 * 0.02562 * 26 25 24 29 29 O 1.21817 * 126.30321 * 180.02562 * 28 26 25 30 30 H 1.08993 * 109.47612 * 185.97635 * 1 2 3 31 31 H 1.09003 * 109.46712 * 305.97930 * 1 2 3 32 32 H 1.09000 * 109.46927 * 65.97417 * 1 2 3 33 33 H 0.96990 * 120.00309 * 94.99726 * 4 2 1 34 34 H 0.96996 * 120.00363 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.56295 * 65.66303 * 15 13 2 36 36 H 1.09003 * 109.35678 * 305.61970 * 15 13 2 37 37 H 1.09000 * 109.45870 * 301.21867 * 16 15 13 38 38 H 1.09003 * 109.45955 * 181.25816 * 16 15 13 39 39 H 1.09001 * 109.50026 * 178.68348 * 17 16 15 40 40 H 1.09009 * 109.49682 * 58.58950 * 17 16 15 41 41 H 1.09005 * 109.58199 * 294.84972 * 18 17 16 42 42 H 1.08997 * 109.59460 * 174.41924 * 18 17 16 43 43 H 1.08996 * 109.46925 * 59.99753 * 22 20 19 44 44 H 1.09000 * 109.46860 * 300.00077 * 22 20 19 45 45 H 1.08006 * 125.58445 * 179.97438 * 25 24 23 46 46 H 1.09000 * 109.47385 * 359.97438 * 27 26 25 47 47 H 1.09003 * 109.46852 * 119.97486 * 27 26 25 48 48 H 1.08994 * 109.46828 * 239.97237 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1491 -0.0076 2.3758 6 1 1.8920 1.0402 2.4244 7 6 2.6113 -0.6622 3.5092 8 7 2.9243 -1.9392 3.4501 9 14 2.7905 0.2698 5.1182 10 1 1.5227 0.1798 5.8862 11 1 3.8946 -0.3241 5.9140 12 1 3.0965 1.6948 4.8334 13 6 2.0400 -0.7213 -1.2492 14 1 1.6564 -0.2264 -2.1416 15 6 1.5655 -2.1731 -1.2296 16 6 2.1928 -2.9285 -2.4034 17 6 3.7168 -2.9147 -2.2650 18 6 4.2158 -1.4668 -2.2998 19 7 3.5090 -0.6982 -1.2662 20 6 4.1952 0.0102 -0.3477 21 8 3.6030 0.7221 0.4356 22 6 5.6984 -0.0823 -0.2937 23 7 6.2021 0.7744 0.7827 24 7 6.5664 2.1233 0.6693 25 6 6.9602 2.5332 1.8317 26 7 6.8699 1.4920 2.7231 27 6 7.2216 1.5467 4.1442 28 6 6.4022 0.4113 2.0668 29 8 6.1964 -0.6899 2.5452 30 1 -0.3634 -1.0220 0.1070 31 1 -0.3633 0.6038 0.8317 32 1 -0.3633 0.4184 -0.9386 33 1 2.2489 -1.6318 1.1525 34 1 3.2476 -2.3965 4.2421 35 1 0.4793 -2.2033 -1.3163 36 1 1.8691 -2.6399 -0.2926 37 1 1.9088 -2.4465 -3.3389 38 1 1.8375 -3.9590 -2.4036 39 1 4.1620 -3.4728 -3.0887 40 1 4.0003 -3.3746 -1.3182 41 1 4.0132 -1.0340 -3.2795 42 1 5.2875 -1.4446 -2.1027 43 1 6.1170 0.2452 -1.2453 44 1 5.9923 -1.1146 -0.1036 45 1 7.3045 3.5304 2.0630 46 1 7.5708 2.5486 4.3938 47 1 6.3442 1.3075 4.7451 48 1 8.0114 0.8246 4.3510 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752141014.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:56 Heat of formation + Delta-G solvation = 77.728199 kcal Electronic energy + Delta-G solvation = -32729.870402 eV Core-core repulsion = 28631.768488 eV Total energy + Delta-G solvation = -4098.101914 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.89544 -40.00950 -36.90625 -36.56694 -35.33540 -34.53210 -32.44705 -32.06695 -31.24821 -29.56040 -28.02313 -27.89469 -26.60949 -24.57599 -23.84199 -23.02289 -22.24406 -21.06810 -20.53284 -19.78645 -18.44019 -17.19535 -16.83195 -16.68492 -15.78884 -15.70563 -15.47145 -14.92513 -14.62182 -14.41821 -14.19006 -14.08403 -13.88347 -13.50424 -13.40006 -13.19864 -12.72430 -12.68727 -12.57890 -12.28503 -12.07729 -11.97293 -11.91623 -11.51453 -11.33823 -11.31986 -11.05683 -10.80098 -10.62294 -10.57578 -10.43452 -10.30948 -10.05937 -9.86300 -9.65208 -9.60218 -9.24047 -8.60458 -8.28299 -7.88306 -7.80891 -6.44937 -5.36304 -2.56851 2.11744 2.33481 3.26968 3.42680 3.52068 3.59611 3.62605 3.66452 3.68671 4.73352 4.87050 4.92274 4.96607 5.00238 5.09047 5.19017 5.26160 5.41662 5.43231 5.44712 5.56557 5.59965 5.71976 5.75995 5.79904 5.86792 5.91941 6.00041 6.09736 6.15518 6.23741 6.24479 6.32997 6.38342 6.50214 6.58286 6.60051 6.68183 6.90980 6.96610 7.09866 7.18230 7.49420 8.06104 8.06489 8.11149 8.67908 8.81779 9.09000 9.93696 10.50041 10.86381 11.88088 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010689 B = 0.006367 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.878662 B = 4396.573122 C = 5921.244928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.169 3.831 3 H 0.081 0.919 4 N -0.704 5.704 5 C -0.185 4.185 6 H 0.058 0.942 7 C -0.014 4.014 8 N -0.931 5.931 9 Si 0.888 3.112 10 H -0.298 1.298 11 H -0.296 1.296 12 H -0.290 1.290 13 C 0.150 3.850 14 H 0.060 0.940 15 C -0.133 4.133 16 C -0.116 4.116 17 C -0.137 4.137 18 C 0.112 3.888 19 N -0.614 5.614 20 C 0.485 3.515 21 O -0.440 6.440 22 C 0.151 3.849 23 N -0.435 5.435 24 N -0.281 5.281 25 C 0.248 3.752 26 N -0.564 5.564 27 C 0.105 3.895 28 C 0.652 3.348 29 O -0.516 6.516 30 H 0.045 0.955 31 H 0.050 0.950 32 H 0.030 0.970 33 H 0.377 0.623 34 H 0.246 0.754 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.107 0.893 44 H 0.112 0.888 45 H 0.223 0.777 46 H 0.088 0.912 47 H 0.074 0.926 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.677 4.803 -12.094 15.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.058 3.942 3 H 0.098 0.902 4 N -0.346 5.346 5 C -0.317 4.317 6 H 0.076 0.924 7 C -0.208 4.208 8 N -0.581 5.581 9 Si 0.723 3.277 10 H -0.227 1.227 11 H -0.223 1.223 12 H -0.216 1.216 13 C 0.046 3.954 14 H 0.078 0.922 15 C -0.171 4.171 16 C -0.153 4.153 17 C -0.175 4.175 18 C -0.011 4.011 19 N -0.352 5.352 20 C 0.269 3.731 21 O -0.307 6.307 22 C 0.025 3.975 23 N -0.257 5.257 24 N -0.103 5.103 25 C -0.051 4.051 26 N -0.295 5.295 27 C -0.038 4.038 28 C 0.352 3.648 29 O -0.385 6.385 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.212 0.788 34 H 0.056 0.944 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.125 0.875 44 H 0.130 0.870 45 H 0.240 0.760 46 H 0.106 0.894 47 H 0.093 0.907 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.058 4.736 -12.122 15.307 hybrid contribution 0.242 -0.099 1.754 1.773 sum 8.300 4.637 -10.368 14.067 Atomic orbital electron populations 1.22592 1.00374 1.00788 0.99127 1.20669 0.90170 0.97901 0.85411 0.90168 1.42339 1.77563 1.09565 1.05124 1.18887 1.33588 0.92819 0.86410 0.92426 1.24453 1.03454 0.95833 0.97109 1.69565 1.52325 1.08367 1.27874 0.86418 0.76892 0.78662 0.85775 1.22680 1.22264 1.21637 1.21448 0.78714 0.95871 0.99377 0.92240 1.21918 1.00151 0.95814 0.99252 1.21486 0.95057 1.00257 0.98518 1.21928 0.96626 0.96403 1.02568 1.21597 0.96344 0.91686 0.91516 1.47840 1.06223 1.50148 1.30993 1.20550 0.88994 0.82451 0.81133 1.90915 1.67348 1.36303 1.36157 1.21155 0.93503 0.94144 0.88702 1.48062 1.61257 1.07491 1.08868 1.76766 1.18885 0.93909 1.20723 1.25684 0.98923 0.95473 0.85057 1.45800 1.61057 1.11327 1.11291 1.21699 1.02042 1.03137 0.76909 1.16642 0.81134 0.84998 0.82054 1.91216 1.56602 1.19987 1.70697 0.93618 0.93105 0.95059 0.78790 0.94351 0.91165 0.90327 0.92458 0.92210 0.91456 0.91047 0.91940 0.90692 0.87548 0.87030 0.76031 0.89370 0.90736 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.27 9.01 37.16 0.33 -2.94 16 2 C 0.17 3.62 1.89 -67.93 -0.13 3.49 16 3 H 0.08 1.94 5.94 -52.03 -0.31 1.63 16 4 N -0.70 -18.45 3.42 -53.43 -0.18 -18.63 16 5 C -0.19 -5.54 8.06 -15.06 -0.12 -5.67 16 6 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 7 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 8 N -0.93 -30.32 13.06 55.49 0.72 -29.60 16 9 Si 0.89 24.85 29.55 -169.99 -5.02 19.83 16 10 H -0.30 -8.27 7.11 56.52 0.40 -7.87 16 11 H -0.30 -8.34 7.11 56.52 0.40 -7.93 16 12 H -0.29 -7.95 7.11 56.52 0.40 -7.54 16 13 C 0.15 2.57 2.74 -67.82 -0.19 2.39 16 14 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 15 C -0.13 -2.12 4.78 -26.84 -0.13 -2.25 16 16 C -0.12 -1.43 5.89 -26.70 -0.16 -1.59 16 17 C -0.14 -1.62 6.08 -26.62 -0.16 -1.78 16 18 C 0.11 1.35 6.35 -3.71 -0.02 1.32 16 19 N -0.61 -10.19 2.97 -165.47 -0.49 -10.68 16 20 C 0.49 9.64 7.16 -10.99 -0.08 9.56 16 21 O -0.44 -10.74 9.54 5.55 0.05 -10.69 16 22 C 0.15 2.57 5.22 -5.19 -0.03 2.55 16 23 N -0.44 -8.38 3.11 -66.31 -0.21 -8.59 16 24 N -0.28 -4.64 12.53 29.87 0.37 -4.27 16 25 C 0.25 3.35 12.61 -89.13 -1.12 2.23 16 26 N -0.56 -9.49 3.14 -130.11 -0.41 -9.90 16 27 C 0.10 1.38 11.08 59.85 0.66 2.04 16 28 C 0.65 14.19 8.60 -86.74 -0.75 13.44 16 29 O -0.52 -13.70 17.76 5.08 0.09 -13.60 16 30 H 0.04 0.88 6.93 -51.93 -0.36 0.52 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.38 10.60 5.89 -40.82 -0.24 10.36 16 34 H 0.25 8.02 8.31 -40.82 -0.34 7.68 16 35 H 0.07 1.07 6.92 -51.93 -0.36 0.71 16 36 H 0.08 1.55 6.24 -51.93 -0.32 1.23 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.77 5.93 -51.93 -0.31 0.46 16 43 H 0.11 1.37 7.71 -51.93 -0.40 0.97 16 44 H 0.11 1.89 7.89 -51.93 -0.41 1.48 16 45 H 0.22 1.60 8.06 -52.48 -0.42 1.18 16 46 H 0.09 0.71 8.07 -51.93 -0.42 0.29 16 47 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 378.51 15.07 5.70 5.70 Total: -1.00 -40.98 378.51 -8.67 -49.66 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -7.33 Total: 8.50 kcal Atomic # 6 Polarization: 24.25 SS G_CDS: -1.98 Total: 22.27 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -0.19 Total: -81.66 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: 0.14 Total: -24.29 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.02 Total: 19.83 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -40.98 -8.67 -49.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752141014.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.386 kcal (2) G-P(sol) polarization free energy of solvation -40.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds