Wall clock time and date at job start Tue Mar 31 2020 19:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47856 * 2 1 4 4 N 1.46502 * 109.47055 * 120.00584 * 2 1 3 5 5 C 1.36946 * 119.99451 * 274.99490 * 4 2 1 6 6 H 1.07995 * 120.00058 * 0.02562 * 5 4 2 7 7 C 1.38811 * 119.99508 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00440 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99850 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46887 * 89.99755 * 9 7 5 11 11 H 1.48494 * 109.47253 * 210.00119 * 9 7 5 12 12 H 1.48498 * 109.47207 * 330.00341 * 9 7 5 13 13 C 1.52999 * 109.47124 * 239.99850 * 2 1 3 14 14 H 1.09010 * 109.69857 * 58.46756 * 13 2 1 15 15 C 1.52756 * 109.51532 * 298.35017 * 13 2 1 16 16 C 1.53034 * 109.38822 * 185.70417 * 15 13 2 17 17 C 1.53034 * 109.53913 * 61.23700 * 16 15 13 18 18 C 1.53188 * 109.31691 * 298.63811 * 17 16 15 19 19 N 1.46923 * 108.77489 * 54.63065 * 18 17 16 20 20 C 1.34773 * 120.63021 * 126.37308 * 19 18 17 21 21 O 1.21287 * 119.99948 * 174.31631 * 20 19 18 22 22 C 1.50703 * 120.00312 * 354.31421 * 20 19 18 23 23 N 1.46497 * 109.47244 * 180.02562 * 22 20 19 24 24 N 1.40176 * 126.34705 * 270.02164 * 23 22 20 25 25 C 1.29394 * 108.13724 * 179.97438 * 24 23 22 26 26 N 1.37358 * 108.83386 * 0.02562 * 25 24 23 27 27 C 1.46501 * 125.83208 * 180.02562 * 26 25 24 28 28 C 1.34813 * 108.33293 * 0.02562 * 26 25 24 29 29 O 1.21817 * 126.30321 * 180.02562 * 28 26 25 30 30 H 1.08993 * 109.47612 * 185.97635 * 1 2 3 31 31 H 1.09003 * 109.46712 * 305.97930 * 1 2 3 32 32 H 1.09000 * 109.46927 * 65.97417 * 1 2 3 33 33 H 0.96990 * 120.00309 * 94.99726 * 4 2 1 34 34 H 0.96996 * 120.00363 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.56295 * 65.66303 * 15 13 2 36 36 H 1.09003 * 109.35678 * 305.61970 * 15 13 2 37 37 H 1.09000 * 109.45870 * 301.21867 * 16 15 13 38 38 H 1.09003 * 109.45955 * 181.25816 * 16 15 13 39 39 H 1.09001 * 109.50026 * 178.68348 * 17 16 15 40 40 H 1.09009 * 109.49682 * 58.58950 * 17 16 15 41 41 H 1.09005 * 109.58199 * 294.84972 * 18 17 16 42 42 H 1.08997 * 109.59460 * 174.41924 * 18 17 16 43 43 H 1.08996 * 109.46925 * 59.99753 * 22 20 19 44 44 H 1.09000 * 109.46860 * 300.00077 * 22 20 19 45 45 H 1.08006 * 125.58445 * 179.97438 * 25 24 23 46 46 H 1.09000 * 109.47385 * 359.97438 * 27 26 25 47 47 H 1.09003 * 109.46852 * 119.97486 * 27 26 25 48 48 H 1.08994 * 109.46828 * 239.97237 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1491 -0.0076 2.3758 6 1 1.8920 1.0402 2.4244 7 6 2.6113 -0.6622 3.5092 8 7 2.9243 -1.9392 3.4501 9 14 2.7905 0.2698 5.1182 10 1 1.5227 0.1798 5.8862 11 1 3.8946 -0.3241 5.9140 12 1 3.0965 1.6948 4.8334 13 6 2.0400 -0.7213 -1.2492 14 1 1.6564 -0.2264 -2.1416 15 6 1.5655 -2.1731 -1.2296 16 6 2.1928 -2.9285 -2.4034 17 6 3.7168 -2.9147 -2.2650 18 6 4.2158 -1.4668 -2.2998 19 7 3.5090 -0.6982 -1.2662 20 6 4.1952 0.0102 -0.3477 21 8 3.6030 0.7221 0.4356 22 6 5.6984 -0.0823 -0.2937 23 7 6.2021 0.7744 0.7827 24 7 6.5664 2.1233 0.6693 25 6 6.9602 2.5332 1.8317 26 7 6.8699 1.4920 2.7231 27 6 7.2216 1.5467 4.1442 28 6 6.4022 0.4113 2.0668 29 8 6.1964 -0.6899 2.5452 30 1 -0.3634 -1.0220 0.1070 31 1 -0.3633 0.6038 0.8317 32 1 -0.3633 0.4184 -0.9386 33 1 2.2489 -1.6318 1.1525 34 1 3.2476 -2.3965 4.2421 35 1 0.4793 -2.2033 -1.3163 36 1 1.8691 -2.6399 -0.2926 37 1 1.9088 -2.4465 -3.3389 38 1 1.8375 -3.9590 -2.4036 39 1 4.1620 -3.4728 -3.0887 40 1 4.0003 -3.3746 -1.3182 41 1 4.0132 -1.0340 -3.2795 42 1 5.2875 -1.4446 -2.1027 43 1 6.1170 0.2452 -1.2453 44 1 5.9923 -1.1146 -0.1036 45 1 7.3045 3.5304 2.0630 46 1 7.5708 2.5486 4.3938 47 1 6.3442 1.3075 4.7451 48 1 8.0114 0.8246 4.3510 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752141014.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:55 Heat of formation + Delta-G solvation = 48.269732 kcal Electronic energy + Delta-G solvation = -32731.147816 eV Core-core repulsion = 28631.768488 eV Total energy + Delta-G solvation = -4099.379329 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.26097 -41.42721 -38.31272 -38.20850 -36.96246 -35.95635 -34.17491 -33.65595 -32.58853 -31.25907 -29.68457 -29.33549 -27.81782 -26.00751 -25.60305 -24.59259 -23.55703 -22.43978 -21.81181 -21.33505 -19.83855 -19.06384 -18.47354 -18.09814 -17.22857 -17.05060 -16.87404 -16.53246 -16.27158 -15.92700 -15.68906 -15.49207 -15.44326 -14.90594 -14.86293 -14.51907 -14.16330 -14.14199 -13.94512 -13.63227 -13.56437 -13.44271 -13.33541 -13.06147 -12.88099 -12.85274 -12.78274 -12.66949 -12.32747 -12.20547 -11.96586 -11.69730 -11.58095 -11.37994 -11.31797 -11.25301 -11.06487 -10.79990 -9.82157 -9.34969 -9.32184 -8.60462 -7.76188 -4.92489 0.78512 1.18611 1.28702 1.32780 1.40125 1.77412 1.95532 2.25896 2.43953 2.62449 3.54289 3.60653 3.62818 3.95170 3.97761 4.06684 4.08744 4.12364 4.14108 4.16668 4.30226 4.36687 4.38575 4.45997 4.52231 4.66266 4.66845 4.72444 4.84286 4.88982 4.96230 4.97342 5.04584 5.09512 5.12303 5.19347 5.28552 5.33150 5.45289 5.56525 5.59831 5.66324 5.79069 5.97117 6.45063 6.69546 6.73403 7.14003 7.51610 7.63724 8.33004 8.56057 9.48043 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010689 B = 0.006367 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.878662 B = 4396.573122 C = 5921.244928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.164 3.836 3 H 0.055 0.945 4 N -0.704 5.704 5 C -0.161 4.161 6 H 0.041 0.959 7 C -0.076 4.076 8 N -0.961 5.961 9 Si 0.939 3.061 10 H -0.292 1.292 11 H -0.304 1.304 12 H -0.283 1.283 13 C 0.153 3.847 14 H 0.093 0.907 15 C -0.127 4.127 16 C -0.109 4.109 17 C -0.134 4.134 18 C 0.104 3.896 19 N -0.611 5.611 20 C 0.476 3.524 21 O -0.500 6.500 22 C 0.149 3.851 23 N -0.441 5.441 24 N -0.303 5.303 25 C 0.270 3.730 26 N -0.566 5.566 27 C 0.098 3.902 28 C 0.628 3.372 29 O -0.584 6.584 30 H 0.043 0.957 31 H 0.025 0.975 32 H 0.071 0.929 33 H 0.365 0.635 34 H 0.234 0.766 35 H 0.078 0.922 36 H 0.030 0.970 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.105 0.895 40 H 0.036 0.964 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.152 0.848 44 H 0.105 0.895 45 H 0.290 0.710 46 H 0.151 0.849 47 H 0.036 0.964 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.498 6.640 -15.146 19.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.055 3.945 3 H 0.072 0.928 4 N -0.344 5.344 5 C -0.294 4.294 6 H 0.059 0.941 7 C -0.267 4.267 8 N -0.615 5.615 9 Si 0.773 3.227 10 H -0.221 1.221 11 H -0.231 1.231 12 H -0.209 1.209 13 C 0.049 3.951 14 H 0.111 0.889 15 C -0.165 4.165 16 C -0.146 4.146 17 C -0.172 4.172 18 C -0.017 4.017 19 N -0.348 5.348 20 C 0.261 3.739 21 O -0.372 6.372 22 C 0.024 3.976 23 N -0.260 5.260 24 N -0.125 5.125 25 C -0.028 4.028 26 N -0.295 5.295 27 C -0.043 4.043 28 C 0.327 3.673 29 O -0.459 6.459 30 H 0.062 0.938 31 H 0.044 0.956 32 H 0.090 0.910 33 H 0.199 0.801 34 H 0.043 0.957 35 H 0.096 0.904 36 H 0.049 0.951 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.123 0.877 40 H 0.055 0.945 41 H 0.117 0.883 42 H 0.109 0.891 43 H 0.169 0.831 44 H 0.123 0.877 45 H 0.305 0.695 46 H 0.169 0.831 47 H 0.055 0.945 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.873 6.630 -15.263 18.858 hybrid contribution 0.001 -0.559 2.583 2.642 sum 8.874 6.072 -12.680 16.625 Atomic orbital electron populations 1.22411 0.98611 1.00503 1.00237 1.20764 0.91178 0.96753 0.85756 0.92755 1.42379 1.77465 1.08873 1.05708 1.18909 1.30976 0.91854 0.87708 0.94081 1.25007 1.05067 0.96683 0.99912 1.69727 1.54529 1.09600 1.27654 0.85575 0.76549 0.77854 0.82771 1.22055 1.23148 1.20890 1.21383 0.79357 0.96326 0.98004 0.88891 1.21834 1.00867 0.95042 0.98790 1.21472 0.94978 1.00419 0.97761 1.21926 0.96596 0.96490 1.02233 1.22002 0.96949 0.91247 0.91519 1.47964 1.06185 1.49514 1.31147 1.21094 0.90158 0.81831 0.80792 1.90879 1.68628 1.39109 1.38566 1.21329 0.91979 0.94069 0.90255 1.48249 1.60622 1.08786 1.08349 1.76784 1.20894 0.92352 1.22433 1.27058 0.95915 0.96557 0.83241 1.46038 1.59914 1.10804 1.12713 1.22014 1.00598 1.07106 0.74572 1.17161 0.81586 0.85377 0.83200 1.91144 1.59659 1.22863 1.72201 0.93763 0.95607 0.91031 0.80133 0.95698 0.90392 0.95114 0.89425 0.91425 0.87716 0.94544 0.88266 0.89077 0.83062 0.87736 0.69478 0.83129 0.94470 0.90211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.06 9.01 71.98 0.65 -5.42 16 2 C 0.16 7.13 1.89 44.99 0.08 7.22 16 3 H 0.05 2.70 5.94 -3.97 -0.02 2.67 16 4 N -0.70 -38.57 3.42 -322.94 -1.11 -39.68 16 5 C -0.16 -10.11 8.06 84.03 0.68 -9.43 16 6 H 0.04 2.67 7.83 -2.91 -0.02 2.65 16 7 C -0.08 -4.95 5.50 84.86 0.47 -4.48 16 8 N -0.96 -66.23 13.06 21.65 0.28 -65.95 16 9 Si 0.94 53.53 29.55 68.60 2.03 55.56 16 10 H -0.29 -16.16 7.11 99.48 0.71 -15.45 16 11 H -0.30 -17.57 7.11 99.48 0.71 -16.86 16 12 H -0.28 -15.51 7.11 99.48 0.71 -14.81 16 13 C 0.15 5.04 2.74 44.83 0.12 5.17 16 14 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 15 C -0.13 -3.92 4.78 30.52 0.15 -3.77 16 16 C -0.11 -2.36 5.89 30.62 0.18 -2.18 16 17 C -0.13 -2.83 6.08 30.67 0.19 -2.64 16 18 C 0.10 2.17 6.35 86.36 0.55 2.72 16 19 N -0.61 -19.60 2.97 -795.82 -2.36 -21.96 16 20 C 0.48 19.12 7.16 87.66 0.63 19.75 16 21 O -0.50 -25.22 9.54 -3.05 -0.03 -25.25 16 22 C 0.15 5.08 5.22 85.63 0.45 5.53 16 23 N -0.44 -17.10 3.11 -481.79 -1.50 -18.60 16 24 N -0.30 -9.54 12.53 -59.42 -0.74 -10.29 16 25 C 0.27 6.55 12.61 179.83 2.27 8.82 16 26 N -0.57 -18.68 3.14 -683.69 -2.15 -20.83 16 27 C 0.10 2.49 11.08 127.77 1.42 3.91 16 28 C 0.63 28.28 8.60 178.99 1.54 29.82 16 29 O -0.58 -33.12 17.76 -4.72 -0.08 -33.20 16 30 H 0.04 1.70 6.93 -2.39 -0.02 1.68 16 31 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.37 21.74 5.89 -92.72 -0.55 21.19 16 34 H 0.23 16.16 8.31 -92.71 -0.77 15.39 16 35 H 0.08 2.25 6.92 -2.39 -0.02 2.23 16 36 H 0.03 1.25 6.24 -2.39 -0.01 1.23 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.10 1.48 8.14 -2.39 -0.02 1.47 16 40 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 42 H 0.09 1.61 5.93 -2.39 -0.01 1.60 16 43 H 0.15 3.60 7.71 -2.39 -0.02 3.58 16 44 H 0.10 3.67 7.89 -2.39 -0.02 3.65 16 45 H 0.29 2.51 8.06 -2.91 -0.02 2.48 16 46 H 0.15 1.84 8.07 -2.39 -0.02 1.82 16 47 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -100.75 378.51 4.12 -96.63 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 0.42 Total: 28.55 kcal Atomic # 6 Polarization: 45.65 SS G_CDS: 9.36 Total: 55.01 kcal Atomic # 7 Polarization: -169.72 SS G_CDS: -7.58 Total: -177.30 kcal Atomic # 8 Polarization: -58.34 SS G_CDS: -0.11 Total: -58.45 kcal Atomic # 14 Polarization: 53.53 SS G_CDS: 2.03 Total: 55.56 kcal Total: -100.75 4.12 -96.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752141014.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.903 kcal (2) G-P(sol) polarization free energy of solvation -100.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds