Wall clock time and date at job start Tue Mar 31 2020 19:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47196 * 2 1 4 4 N 1.46505 * 109.47054 * 240.00597 * 2 1 3 5 5 C 1.36930 * 120.00237 * 85.00046 * 4 2 1 6 6 H 1.07999 * 119.99886 * 359.97438 * 5 4 2 7 7 C 1.38809 * 119.99960 * 180.02562 * 5 4 2 8 8 N 1.31622 * 120.00373 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00039 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47178 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47187 * 119.99891 * 9 7 5 12 12 H 1.48501 * 109.46827 * 239.99926 * 9 7 5 13 13 C 1.52995 * 109.47259 * 120.00272 * 2 1 3 14 14 H 1.09000 * 109.70206 * 306.42449 * 13 2 1 15 15 C 1.53625 * 109.66262 * 67.01980 * 13 2 1 16 16 C 1.53043 * 109.24156 * 174.55356 * 15 13 2 17 17 C 1.53042 * 109.53650 * 298.50735 * 16 15 13 18 18 C 1.53193 * 109.31344 * 61.36459 * 17 16 15 19 19 N 1.46928 * 109.58715 * 186.07071 * 13 2 1 20 20 C 1.34772 * 120.63025 * 6.62654 * 19 13 2 21 21 O 1.21279 * 120.00052 * 354.78886 * 20 19 13 22 22 C 1.50705 * 119.99939 * 175.06124 * 20 19 13 23 23 N 1.46497 * 109.47255 * 179.72774 * 22 20 19 24 24 N 1.40169 * 126.34574 * 270.02784 * 23 22 20 25 25 C 1.29402 * 108.14084 * 180.02562 * 24 23 22 26 26 N 1.37361 * 108.82661 * 359.97438 * 25 24 23 27 27 C 1.46503 * 125.83262 * 180.02562 * 26 25 24 28 28 C 1.34818 * 108.33483 * 359.73882 * 26 25 24 29 29 O 1.21813 * 126.30158 * 180.28883 * 28 26 25 30 30 H 1.08998 * 109.47588 * 184.93644 * 1 2 3 31 31 H 1.09001 * 109.46957 * 304.94259 * 1 2 3 32 32 H 1.09007 * 109.47139 * 64.93479 * 1 2 3 33 33 H 0.97002 * 119.98956 * 265.00037 * 4 2 1 34 34 H 0.96998 * 120.00628 * 179.97438 * 8 7 5 35 35 H 1.08992 * 109.63713 * 54.55971 * 15 13 2 36 36 H 1.09000 * 109.42919 * 294.41707 * 15 13 2 37 37 H 1.09004 * 109.46146 * 178.49199 * 16 15 13 38 38 H 1.08995 * 109.46619 * 58.52592 * 16 15 13 39 39 H 1.09003 * 109.49856 * 301.42113 * 17 16 15 40 40 H 1.08994 * 109.52621 * 181.33347 * 17 16 15 41 41 H 1.08994 * 109.59225 * 185.57616 * 18 17 16 42 42 H 1.09000 * 109.58350 * 65.15320 * 18 17 16 43 43 H 1.08999 * 109.47229 * 299.73002 * 22 20 19 44 44 H 1.08998 * 109.46848 * 59.72222 * 22 20 19 45 45 H 1.07999 * 125.58954 * 179.97438 * 25 24 23 46 46 H 1.09000 * 109.47282 * 359.97096 * 27 26 25 47 47 H 1.08997 * 109.47196 * 119.97194 * 27 26 25 48 48 H 1.09000 * 109.46838 * 239.97462 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1491 -0.0073 -2.3758 6 1 1.8919 1.0405 -2.4243 7 6 2.6113 -0.6618 -3.5093 8 7 2.9243 -1.9389 -3.4504 9 14 2.7890 0.2700 -5.1186 10 1 2.3742 1.6822 -4.9213 11 1 4.2057 0.2271 -5.5615 12 1 1.9279 -0.3586 -6.1522 13 6 2.0400 -0.7213 1.2492 14 1 1.5880 -0.2810 2.1380 15 6 1.6798 -2.2125 1.1683 16 6 2.3103 -2.9486 2.3527 17 6 3.8335 -2.8171 2.2849 18 6 4.2188 -1.3371 2.3748 19 7 3.5019 -0.5973 1.3271 20 6 4.1721 0.1846 0.4577 21 8 3.5815 0.7190 -0.4569 22 6 5.6564 0.3899 0.6184 23 7 6.1462 1.2678 -0.4472 24 7 6.6186 0.8650 -1.7040 25 6 6.9604 1.9241 -2.3643 26 7 6.7283 3.0287 -1.5814 27 6 6.9828 4.4198 -1.9640 28 6 6.2205 2.6144 -0.4033 29 8 5.8921 3.3247 0.5302 30 1 -0.3634 -1.0238 0.0884 31 1 -0.3633 0.5886 0.8424 32 1 -0.3634 0.4354 -0.9309 33 1 2.2489 -1.6317 -1.1527 34 1 3.2469 -2.3963 -4.2425 35 1 2.0593 -2.6309 0.2361 36 1 0.5964 -2.3263 1.2043 37 1 2.0348 -4.0025 2.3136 38 1 1.9494 -2.5135 3.2846 39 1 4.1928 -3.2297 1.3421 40 1 4.2835 -3.3612 3.1152 41 1 5.2934 -1.2296 2.2279 42 1 3.9408 -0.9461 3.3536 43 1 5.8572 0.8474 1.5871 44 1 6.1648 -0.5724 0.5589 45 1 7.3622 1.9374 -3.3667 46 1 7.3894 4.4501 -2.9749 47 1 6.0498 4.9823 -1.9307 48 1 7.6986 4.8620 -1.2711 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752141015.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:59 Heat of formation + Delta-G solvation = 77.636881 kcal Electronic energy + Delta-G solvation = -32278.085236 eV Core-core repulsion = 28179.979363 eV Total energy + Delta-G solvation = -4098.105874 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.10556 -40.04576 -36.99575 -36.88099 -35.42403 -34.68288 -32.49085 -32.11649 -31.38207 -29.58497 -28.16681 -27.96941 -26.75561 -24.62970 -23.84683 -23.13547 -22.39049 -21.18420 -20.63671 -19.85394 -18.50493 -17.34900 -16.92372 -16.77378 -15.95379 -15.84411 -15.57090 -15.23144 -14.81780 -14.48931 -14.26569 -14.12490 -13.88032 -13.61573 -13.45338 -13.22522 -12.85792 -12.79667 -12.74193 -12.29937 -12.20325 -12.09978 -11.94126 -11.62347 -11.53105 -11.31821 -11.07137 -10.78418 -10.66290 -10.59395 -10.49238 -10.31937 -10.10620 -9.98503 -9.91104 -9.66079 -9.30194 -8.64352 -8.45886 -8.04755 -7.80931 -6.50165 -5.43287 -2.63884 1.94981 2.31342 2.95412 3.30796 3.35771 3.56810 3.61556 3.62137 3.65020 4.57962 4.80831 4.87959 4.92016 4.97178 5.04954 5.12736 5.19594 5.22576 5.31192 5.40728 5.47657 5.54272 5.57484 5.62524 5.74043 5.82161 5.88450 5.94459 6.04236 6.06209 6.15042 6.21476 6.29805 6.33813 6.35890 6.49412 6.56957 6.66613 6.76744 6.93932 7.07611 7.13343 7.46151 7.91141 8.00023 8.05322 8.31575 8.74917 9.01912 9.87045 10.44020 10.80947 11.81458 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009014 B = 0.006326 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3105.525654 B = 4425.131502 C = 6341.031969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.170 3.830 3 H 0.078 0.922 4 N -0.700 5.700 5 C -0.169 4.169 6 H 0.060 0.940 7 C -0.027 4.027 8 N -0.945 5.945 9 Si 0.894 3.106 10 H -0.287 1.287 11 H -0.297 1.297 12 H -0.300 1.300 13 C 0.149 3.851 14 H 0.061 0.939 15 C -0.133 4.133 16 C -0.116 4.116 17 C -0.135 4.135 18 C 0.111 3.889 19 N -0.612 5.612 20 C 0.474 3.526 21 O -0.431 6.431 22 C 0.146 3.854 23 N -0.429 5.429 24 N -0.250 5.250 25 C 0.244 3.756 26 N -0.563 5.563 27 C 0.105 3.895 28 C 0.653 3.347 29 O -0.563 6.563 30 H 0.043 0.957 31 H 0.031 0.969 32 H 0.055 0.945 33 H 0.378 0.622 34 H 0.245 0.755 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.227 0.773 46 H 0.090 0.910 47 H 0.074 0.926 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.703 3.788 11.094 14.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.060 3.940 3 H 0.095 0.905 4 N -0.342 5.342 5 C -0.302 4.302 6 H 0.078 0.922 7 C -0.220 4.220 8 N -0.597 5.597 9 Si 0.728 3.272 10 H -0.213 1.213 11 H -0.225 1.225 12 H -0.228 1.228 13 C 0.045 3.955 14 H 0.079 0.921 15 C -0.171 4.171 16 C -0.153 4.153 17 C -0.174 4.174 18 C -0.012 4.012 19 N -0.350 5.350 20 C 0.257 3.743 21 O -0.298 6.298 22 C 0.020 3.980 23 N -0.248 5.248 24 N -0.070 5.070 25 C -0.055 4.055 26 N -0.292 5.292 27 C -0.037 4.037 28 C 0.353 3.647 29 O -0.438 6.438 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.213 0.787 34 H 0.055 0.945 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.129 0.871 44 H 0.131 0.869 45 H 0.243 0.757 46 H 0.109 0.891 47 H 0.093 0.907 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.078 3.719 11.118 14.237 hybrid contribution 0.235 0.705 -1.087 1.317 sum 8.312 4.424 10.032 13.759 Atomic orbital electron populations 1.22596 1.00245 1.00119 1.00121 1.20662 0.90158 0.97658 0.85491 0.90465 1.42388 1.77179 1.09581 1.05046 1.19041 1.31847 0.92912 0.86360 0.92218 1.24490 1.04216 0.95966 0.97342 1.69633 1.53836 1.08468 1.27790 0.86238 0.76950 0.78659 0.85321 1.21320 1.22518 1.22771 1.21655 0.78856 0.95700 0.99269 0.92069 1.22066 1.00518 0.95367 0.99181 1.21490 0.95024 1.00276 0.98555 1.21911 0.96911 0.95975 1.02557 1.21612 0.96395 0.92005 0.91208 1.47821 1.07041 1.47610 1.32499 1.20625 0.88920 0.81870 0.82912 1.91045 1.66243 1.45332 1.27177 1.21259 0.94296 0.94817 0.87614 1.48187 1.58880 1.04940 1.12796 1.77132 1.15832 1.21719 0.92309 1.25874 0.99376 0.81249 0.99033 1.45796 1.59432 1.08717 1.15251 1.21717 1.02710 0.77887 1.01433 1.16585 0.81294 0.83201 0.83658 1.91031 1.57314 1.59009 1.36438 0.93804 0.94975 0.92636 0.78656 0.94460 0.90091 0.91225 0.92164 0.92459 0.91053 0.91424 0.90662 0.91943 0.87110 0.86876 0.75728 0.89122 0.90697 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.30 9.38 37.16 0.35 -2.95 16 2 C 0.17 3.64 1.88 -67.93 -0.13 3.52 16 3 H 0.08 1.88 5.90 -52.19 -0.31 1.57 16 4 N -0.70 -18.00 3.62 -53.43 -0.19 -18.19 16 5 C -0.17 -4.97 7.98 -15.06 -0.12 -5.09 16 6 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 7 C -0.03 -0.82 5.50 -17.43 -0.10 -0.92 16 8 N -0.94 -29.63 13.06 55.49 0.72 -28.90 16 9 Si 0.89 24.00 29.55 -169.99 -5.02 18.97 16 10 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 11 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 12 H -0.30 -8.10 7.11 56.52 0.40 -7.69 16 13 C 0.15 2.55 2.73 -67.38 -0.18 2.37 16 14 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 15 C -0.13 -2.11 4.89 -26.38 -0.13 -2.24 16 16 C -0.12 -1.42 5.88 -26.69 -0.16 -1.57 16 17 C -0.14 -1.56 6.08 -26.61 -0.16 -1.72 16 18 C 0.11 1.32 6.33 -3.71 -0.02 1.29 16 19 N -0.61 -10.04 2.96 -164.96 -0.49 -10.53 16 20 C 0.47 9.26 7.46 -10.98 -0.08 9.18 16 21 O -0.43 -10.49 9.17 5.56 0.05 -10.44 16 22 C 0.15 2.37 5.27 -5.19 -0.03 2.34 16 23 N -0.43 -7.94 3.11 -66.31 -0.21 -8.14 16 24 N -0.25 -4.59 12.53 29.87 0.37 -4.22 16 25 C 0.24 3.49 12.61 -89.12 -1.12 2.36 16 26 N -0.56 -8.30 3.14 -130.10 -0.41 -8.71 16 27 C 0.10 1.03 11.08 59.85 0.66 1.69 16 28 C 0.65 12.22 8.61 -86.74 -0.75 11.47 16 29 O -0.56 -11.84 17.77 5.09 0.09 -11.75 16 30 H 0.04 0.81 6.57 -51.93 -0.34 0.47 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 1.18 8.14 -51.92 -0.42 0.76 16 33 H 0.38 10.30 5.60 -40.82 -0.23 10.08 16 34 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.08 1.58 6.05 -51.93 -0.31 1.27 16 36 H 0.07 1.06 6.82 -51.93 -0.35 0.71 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.75 5.96 -51.93 -0.31 0.44 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.11 1.52 8.08 -51.93 -0.42 1.10 16 44 H 0.11 1.60 7.48 -51.93 -0.39 1.21 16 45 H 0.23 2.04 8.06 -52.49 -0.42 1.62 16 46 H 0.09 0.55 8.07 -51.93 -0.42 0.13 16 47 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 378.06 15.07 5.70 5.70 Total: -1.00 -39.63 378.06 -8.63 -48.26 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -7.28 Total: 8.21 kcal Atomic # 6 Polarization: 21.70 SS G_CDS: -1.97 Total: 19.73 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -0.20 Total: -78.70 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: 0.14 Total: -22.19 kcal Atomic # 14 Polarization: 24.00 SS G_CDS: -5.02 Total: 18.97 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -39.63 -8.63 -48.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752141015.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.901 kcal (2) G-P(sol) polarization free energy of solvation -39.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds