Wall clock time and date at job start Tue Mar 31 2020 19:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46533 * 2 1 4 4 N 1.46498 * 109.47024 * 240.00119 * 2 1 3 5 5 C 1.36935 * 120.00018 * 76.53916 * 4 2 1 6 6 H 1.08001 * 120.00418 * 359.97438 * 5 4 2 7 7 C 1.38813 * 120.00066 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99658 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00067 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47290 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46868 * 120.00337 * 9 7 5 12 12 H 1.48502 * 109.47062 * 240.00105 * 9 7 5 13 13 C 1.53004 * 109.47328 * 119.99750 * 2 1 3 14 14 H 1.08996 * 109.58236 * 72.38349 * 13 2 1 15 15 C 1.53189 * 109.58528 * 312.10194 * 13 2 1 16 16 C 1.53071 * 109.29255 * 185.71794 * 15 13 2 17 17 C 1.53041 * 109.66192 * 61.15676 * 16 15 13 18 18 C 1.53198 * 109.30679 * 298.69955 * 17 16 15 19 19 N 1.46917 * 109.58594 * 192.67037 * 13 2 1 20 20 C 1.34787 * 120.63334 * 353.37205 * 19 13 2 21 21 O 1.21286 * 119.99599 * 355.15738 * 20 19 13 22 22 C 1.50694 * 120.00044 * 175.15039 * 20 19 13 23 23 N 1.46504 * 109.47194 * 180.02562 * 22 20 19 24 24 N 1.40175 * 126.34725 * 270.02893 * 23 22 20 25 25 C 1.29394 * 108.13799 * 179.97438 * 24 23 22 26 26 N 1.37365 * 108.83348 * 359.97438 * 25 24 23 27 27 C 1.46494 * 125.83408 * 180.02562 * 26 25 24 28 28 C 1.34818 * 108.32811 * 359.73890 * 26 25 24 29 29 O 1.21812 * 126.30099 * 180.28891 * 28 26 25 30 30 H 1.09010 * 109.46643 * 186.21350 * 1 2 3 31 31 H 1.09002 * 109.47235 * 306.20706 * 1 2 3 32 32 H 1.08997 * 109.47343 * 66.21070 * 1 2 3 33 33 H 0.97002 * 119.99498 * 256.53161 * 4 2 1 34 34 H 0.97003 * 119.99964 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.50246 * 305.53086 * 15 13 2 36 36 H 1.09007 * 109.49558 * 65.62723 * 15 13 2 37 37 H 1.09001 * 109.34921 * 301.12628 * 16 15 13 38 38 H 1.09006 * 109.44434 * 181.23863 * 16 15 13 39 39 H 1.08990 * 109.50180 * 178.74840 * 17 16 15 40 40 H 1.09007 * 109.49604 * 58.64536 * 17 16 15 41 41 H 1.08993 * 109.58544 * 294.84351 * 18 17 16 42 42 H 1.09004 * 109.58514 * 174.41541 * 18 17 16 43 43 H 1.08998 * 109.47456 * 300.00347 * 22 20 19 44 44 H 1.09003 * 109.47191 * 60.00226 * 22 20 19 45 45 H 1.08001 * 125.58861 * 179.97438 * 25 24 23 46 46 H 1.08993 * 109.47350 * 359.97438 * 27 26 25 47 47 H 1.09001 * 109.46969 * 119.97634 * 27 26 25 48 48 H 1.09000 * 109.47107 * 239.97298 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 1.9863 -0.0605 -2.4115 6 1 1.6006 0.9454 -2.4884 7 6 2.4495 -0.7147 -3.5449 8 7 2.9199 -1.9403 -3.4512 9 14 2.4051 0.1446 -5.2030 10 1 1.8352 1.5062 -5.0398 11 1 3.7841 0.2471 -5.7443 12 1 1.5612 -0.6364 -6.1427 13 6 2.0401 -0.7212 1.2493 14 1 1.8689 -1.7928 1.1480 15 6 1.2990 -0.1971 2.4833 16 6 1.9111 -0.8169 3.7420 17 6 3.3832 -0.4131 3.8511 18 6 4.1454 -0.9422 2.6320 19 7 3.4775 -0.4653 1.4133 20 6 4.1705 0.1938 0.4636 21 8 3.6291 0.5047 -0.5763 22 6 5.6178 0.5447 0.6939 23 7 6.1408 1.2532 -0.4769 24 7 6.7482 0.6705 -1.5978 25 6 7.0752 1.6175 -2.4167 26 7 6.7015 2.8224 -1.8731 27 6 6.8951 4.1377 -2.4884 28 6 6.1206 2.5871 -0.6795 29 8 5.6643 3.4248 0.0780 30 1 -0.3633 -1.0217 0.1112 31 1 -0.3634 0.6071 0.8292 32 1 -0.3634 0.4145 -0.9403 33 1 2.3644 -1.5941 -1.1272 34 1 3.2432 -2.3976 -4.2432 35 1 1.3938 0.8877 2.5313 36 1 0.2452 -0.4681 2.4172 37 1 1.8358 -1.9028 3.6831 38 1 1.3713 -0.4627 4.6202 39 1 3.8105 -0.8374 4.7596 40 1 3.4608 0.6737 3.8851 41 1 4.1456 -2.0320 2.6461 42 1 5.1711 -0.5741 2.6544 43 1 5.7013 1.1843 1.5725 44 1 6.1921 -0.3680 0.8531 45 1 7.5621 1.4828 -3.3713 46 1 7.3863 4.0185 -3.4540 47 1 5.9271 4.6186 -2.6301 48 1 7.5157 4.7550 -1.8388 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752141016.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:02 Heat of formation + Delta-G solvation = 77.622747 kcal Electronic energy + Delta-G solvation = -32108.268759 eV Core-core repulsion = 28010.162272 eV Total energy + Delta-G solvation = -4098.106487 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.09004 -40.03918 -37.00604 -36.88260 -35.46529 -34.66175 -32.61926 -32.15840 -31.39689 -29.81916 -28.20085 -27.70864 -26.74462 -24.65642 -24.19384 -22.78450 -22.35567 -21.24669 -20.45080 -19.92834 -18.86803 -17.32398 -17.06166 -16.55116 -15.95047 -15.87157 -15.60037 -15.19096 -14.82678 -14.53867 -14.34295 -14.22077 -13.84571 -13.54322 -13.44221 -13.17417 -12.96749 -12.77539 -12.74601 -12.55934 -12.16388 -12.09966 -11.92589 -11.69567 -11.55316 -11.33452 -11.08943 -10.89620 -10.79221 -10.65583 -10.54548 -10.39673 -10.11778 -10.00042 -9.91487 -9.62118 -9.37709 -8.61363 -8.48907 -8.05517 -7.90376 -6.41162 -5.42877 -2.62436 1.96147 2.31483 2.98044 3.31055 3.40405 3.56259 3.58173 3.61657 3.64338 4.59752 4.76657 4.81476 4.88873 4.94908 4.96053 5.10485 5.11108 5.24776 5.25860 5.30430 5.46079 5.50375 5.51421 5.62986 5.66558 5.81236 5.86360 5.91596 5.96060 6.04114 6.06122 6.14134 6.17576 6.19328 6.33948 6.41610 6.50938 6.52840 6.77833 6.86530 6.98325 7.10594 7.42716 7.91727 7.98907 8.00321 8.33509 8.73718 9.03958 9.85873 10.43337 10.79344 11.81665 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008435 B = 0.006483 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3318.542000 B = 4317.823101 C = 6659.030189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.181 3.819 3 H 0.056 0.944 4 N -0.689 5.689 5 C -0.176 4.176 6 H 0.059 0.941 7 C -0.025 4.025 8 N -0.941 5.941 9 Si 0.893 3.107 10 H -0.287 1.287 11 H -0.298 1.298 12 H -0.298 1.298 13 C 0.150 3.850 14 H 0.065 0.935 15 C -0.128 4.128 16 C -0.118 4.118 17 C -0.135 4.135 18 C 0.111 3.889 19 N -0.615 5.615 20 C 0.454 3.546 21 O -0.412 6.412 22 C 0.146 3.854 23 N -0.429 5.429 24 N -0.256 5.256 25 C 0.247 3.753 26 N -0.562 5.562 27 C 0.105 3.895 28 C 0.654 3.346 29 O -0.562 6.562 30 H 0.042 0.958 31 H 0.036 0.964 32 H 0.055 0.945 33 H 0.377 0.623 34 H 0.246 0.754 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.227 0.773 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.574 5.337 12.441 16.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.071 3.929 3 H 0.074 0.926 4 N -0.329 5.329 5 C -0.308 4.308 6 H 0.077 0.923 7 C -0.219 4.219 8 N -0.593 5.593 9 Si 0.727 3.273 10 H -0.213 1.213 11 H -0.226 1.226 12 H -0.226 1.226 13 C 0.047 3.953 14 H 0.083 0.917 15 C -0.167 4.167 16 C -0.156 4.156 17 C -0.173 4.173 18 C -0.013 4.013 19 N -0.354 5.354 20 C 0.236 3.764 21 O -0.277 6.277 22 C 0.021 3.979 23 N -0.249 5.249 24 N -0.076 5.076 25 C -0.052 4.052 26 N -0.291 5.291 27 C -0.038 4.038 28 C 0.354 3.646 29 O -0.437 6.437 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.210 0.790 34 H 0.056 0.944 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.243 0.757 46 H 0.109 0.891 47 H 0.093 0.907 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.923 5.245 12.424 15.641 hybrid contribution 0.160 0.745 -1.186 1.410 sum 8.083 5.990 11.238 15.083 Atomic orbital electron populations 1.22557 0.99769 1.00078 1.00370 1.20380 0.90454 0.96683 0.85338 0.92611 1.42233 1.73249 1.15226 1.02237 1.18995 1.30478 0.96627 0.84675 0.92329 1.24494 1.03560 0.96787 0.97012 1.69647 1.50386 1.11951 1.27322 0.86255 0.76736 0.78388 0.85876 1.21255 1.22611 1.22604 1.21489 0.78920 0.99450 0.95479 0.91717 1.22024 0.99741 1.00898 0.94062 1.21511 0.95411 1.00719 0.97917 1.21924 0.96223 1.01584 0.97586 1.21610 0.95971 0.99137 0.84589 1.47856 1.09079 1.58945 1.19506 1.20781 0.88438 0.82296 0.84916 1.91321 1.67061 1.46672 1.22605 1.21244 0.94370 0.98143 0.84169 1.48185 1.54957 1.04539 1.17198 1.77058 1.14214 1.21021 0.95276 1.25848 0.98954 0.80195 1.00194 1.45790 1.55596 1.08620 1.19139 1.21719 1.03211 0.80674 0.98161 1.16576 0.81427 0.83870 0.82774 1.91031 1.53436 1.49008 1.50201 0.93864 0.94539 0.92578 0.78982 0.94438 0.91720 0.90635 0.91953 0.92144 0.91240 0.91567 0.91663 0.90630 0.87188 0.87130 0.75709 0.89116 0.90661 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.24 8.47 37.16 0.31 -2.93 16 2 C 0.18 3.90 1.83 -67.93 -0.12 3.77 16 3 H 0.06 1.37 6.39 -51.93 -0.33 1.04 16 4 N -0.69 -18.18 3.26 -53.42 -0.17 -18.36 16 5 C -0.18 -5.21 8.08 -15.06 -0.12 -5.33 16 6 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 7 C -0.03 -0.77 5.50 -17.43 -0.10 -0.87 16 8 N -0.94 -29.93 13.06 55.49 0.72 -29.21 16 9 Si 0.89 24.12 29.55 -169.99 -5.02 19.09 16 10 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 11 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 12 H -0.30 -8.05 7.11 56.52 0.40 -7.65 16 13 C 0.15 2.57 2.62 -67.60 -0.18 2.39 16 14 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 15 C -0.13 -1.72 4.45 -26.60 -0.12 -1.84 16 16 C -0.12 -1.25 5.88 -26.67 -0.16 -1.40 16 17 C -0.13 -1.32 6.09 -26.61 -0.16 -1.49 16 18 C 0.11 1.26 6.35 -3.71 -0.02 1.24 16 19 N -0.61 -9.97 2.97 -165.22 -0.49 -10.47 16 20 C 0.45 8.87 7.50 -10.98 -0.08 8.78 16 21 O -0.41 -10.21 9.24 5.55 0.05 -10.16 16 22 C 0.15 2.36 5.22 -5.19 -0.03 2.33 16 23 N -0.43 -7.96 3.11 -66.31 -0.21 -8.17 16 24 N -0.26 -4.63 12.53 29.87 0.37 -4.26 16 25 C 0.25 3.54 12.61 -89.12 -1.12 2.41 16 26 N -0.56 -8.48 3.14 -130.11 -0.41 -8.89 16 27 C 0.10 1.07 11.08 59.84 0.66 1.73 16 28 C 0.65 12.45 8.60 -86.74 -0.75 11.71 16 29 O -0.56 -12.06 17.77 5.09 0.09 -11.97 16 30 H 0.04 0.80 8.14 -51.92 -0.42 0.38 16 31 H 0.04 0.59 6.85 -51.93 -0.36 0.24 16 32 H 0.06 1.21 7.94 -51.93 -0.41 0.79 16 33 H 0.38 10.74 7.70 -40.82 -0.31 10.43 16 34 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 0.97 6.84 -51.93 -0.35 0.61 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.71 5.93 -51.93 -0.31 0.41 16 43 H 0.11 1.52 7.86 -51.93 -0.41 1.11 16 44 H 0.11 1.50 7.74 -51.93 -0.40 1.09 16 45 H 0.23 2.01 8.06 -52.49 -0.42 1.59 16 46 H 0.09 0.58 8.07 -51.93 -0.42 0.16 16 47 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 48 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 381.13 15.07 5.74 5.74 Total: -1.00 -40.34 381.13 -8.80 -49.14 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -7.50 Total: 6.97 kcal Atomic # 6 Polarization: 22.51 SS G_CDS: -1.98 Total: 20.52 kcal Atomic # 7 Polarization: -79.16 SS G_CDS: -0.18 Total: -79.34 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: 0.14 Total: -22.13 kcal Atomic # 14 Polarization: 24.12 SS G_CDS: -5.02 Total: 19.09 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -40.34 -8.80 -49.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752141016.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.764 kcal (2) G-P(sol) polarization free energy of solvation -40.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds