Wall clock time and date at job start Tue Mar 31 2020 19:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09006 * 109.46583 * 2 1 4 4 N 1.46500 * 109.47057 * 119.99342 * 2 1 3 5 5 C 1.36933 * 120.00456 * 285.88941 * 4 2 1 6 6 H 1.07998 * 119.99716 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99874 * 179.97438 * 5 4 2 8 8 N 1.31611 * 120.00040 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99663 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47659 * 60.00059 * 9 7 5 11 11 H 1.48501 * 109.47134 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47522 * 299.99825 * 9 7 5 13 13 C 1.52993 * 109.47141 * 239.99758 * 2 1 3 14 14 H 1.09002 * 109.58758 * 292.82723 * 13 2 1 15 15 C 1.53201 * 109.58439 * 53.25430 * 13 2 1 16 16 C 1.53107 * 109.32695 * 174.42351 * 15 13 2 17 17 C 1.53043 * 109.50544 * 298.65399 * 16 15 13 18 18 C 1.53192 * 109.33767 * 61.34803 * 17 16 15 19 19 N 1.46925 * 108.77609 * 305.35198 * 18 17 16 20 20 C 1.34773 * 120.63036 * 233.58120 * 19 18 17 21 21 O 1.21285 * 120.00185 * 174.32067 * 20 19 18 22 22 C 1.50707 * 119.99975 * 354.32430 * 20 19 18 23 23 N 1.46504 * 109.46896 * 179.97438 * 22 20 19 24 24 N 1.40173 * 126.34986 * 270.02404 * 23 22 20 25 25 C 1.29399 * 108.13773 * 180.02562 * 24 23 22 26 26 N 1.37354 * 108.83304 * 0.02562 * 25 24 23 27 27 C 1.46495 * 125.83480 * 180.02562 * 26 25 24 28 28 C 1.34825 * 108.33285 * 359.72949 * 26 25 24 29 29 O 1.21809 * 126.30055 * 180.28842 * 28 26 25 30 30 H 1.08992 * 109.46749 * 174.37396 * 1 2 3 31 31 H 1.09003 * 109.46775 * 294.37430 * 1 2 3 32 32 H 1.08995 * 109.46694 * 54.37212 * 1 2 3 33 33 H 0.97001 * 119.99534 * 105.89112 * 4 2 1 34 34 H 0.97001 * 120.00291 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.49514 * 294.36777 * 15 13 2 36 36 H 1.08994 * 109.49784 * 54.47360 * 15 13 2 37 37 H 1.09000 * 109.50530 * 178.63121 * 16 15 13 38 38 H 1.08997 * 109.45535 * 58.64650 * 16 15 13 39 39 H 1.09007 * 109.49492 * 301.38514 * 17 16 15 40 40 H 1.08996 * 109.49979 * 181.32062 * 17 16 15 41 41 H 1.09000 * 109.58311 * 65.13833 * 18 17 16 42 42 H 1.09005 * 109.58785 * 185.41988 * 18 17 16 43 43 H 1.08990 * 109.47185 * 299.99737 * 22 20 19 44 44 H 1.08995 * 109.46943 * 60.00147 * 22 20 19 45 45 H 1.08002 * 125.58115 * 179.97438 * 25 24 23 46 46 H 1.08999 * 109.47090 * 359.97438 * 27 26 25 47 47 H 1.09004 * 109.47185 * 119.96584 * 27 26 25 48 48 H 1.09000 * 109.47178 * 239.97055 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.9406 -0.0795 2.4193 6 1 1.5188 0.9112 2.5020 7 6 2.4028 -0.7341 3.5528 8 7 2.9163 -1.9417 3.4519 9 14 2.2959 0.0991 5.2212 10 1 0.8758 0.3995 5.5345 11 1 2.8527 -0.8027 6.2614 12 1 3.0749 1.3631 5.1942 13 6 2.0401 -0.7213 -1.2492 14 1 1.7863 -1.7796 -1.1892 15 6 1.3971 -0.1057 -2.4960 16 6 2.0140 -0.7357 -3.7477 17 6 3.5152 -0.4401 -3.7817 18 6 4.1821 -1.0594 -2.5494 19 7 3.4983 -0.5690 -1.3450 20 6 4.1954 0.0089 -0.3468 21 8 3.6110 0.5018 0.5948 22 6 5.7011 0.0427 -0.4006 23 7 6.2172 0.7202 0.7915 24 7 6.4678 2.0930 0.9238 25 6 6.9164 2.3072 2.1185 26 7 6.9737 1.1113 2.7917 27 6 7.4270 0.9251 4.1723 28 6 6.5352 0.1390 1.9670 29 8 6.4450 -1.0462 2.2334 30 1 -0.3632 -1.0227 -0.1007 31 1 -0.3633 0.4241 0.9361 32 1 -0.3632 0.5986 -0.8353 33 1 2.3969 -1.5805 1.1219 34 1 3.2390 -2.3993 4.2440 35 1 0.3241 -0.2967 -2.4840 36 1 1.5758 0.9695 -2.5043 37 1 1.5414 -0.3173 -4.6364 38 1 1.8566 -1.8140 -3.7266 39 1 3.6738 0.6383 -3.7779 40 1 3.9500 -0.8686 -4.6847 41 1 4.1028 -2.1454 -2.5981 42 1 5.2328 -0.7707 -2.5187 43 1 6.0864 -0.9762 -0.4352 44 1 6.0208 0.5825 -1.2919 45 1 7.2001 3.2688 2.5202 46 1 7.7167 1.8882 4.5926 47 1 6.6186 0.4982 4.7658 48 1 8.2831 0.2505 4.1857 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752141017.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:05 Heat of formation + Delta-G solvation = 81.480955 kcal Electronic energy + Delta-G solvation = -32373.238323 eV Core-core repulsion = 28275.299140 eV Total energy + Delta-G solvation = -4097.939182 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.90947 -40.00222 -36.92045 -36.61278 -35.40620 -34.51609 -32.57651 -32.12561 -31.26247 -29.80053 -28.06885 -27.68483 -26.60808 -24.60593 -24.15669 -22.70310 -22.25545 -21.07692 -20.43726 -19.90384 -18.83352 -17.17471 -16.93872 -16.46588 -15.81607 -15.69350 -15.45862 -15.07647 -14.76375 -14.52208 -14.30112 -14.16029 -13.76443 -13.48393 -13.35377 -13.13028 -12.91540 -12.64586 -12.56770 -12.48596 -12.08495 -11.98237 -11.89495 -11.68994 -11.45899 -11.30512 -11.09254 -10.83532 -10.80321 -10.62394 -10.55953 -10.36684 -10.12171 -9.86706 -9.68622 -9.60530 -9.33321 -8.58093 -8.35296 -7.89733 -7.86818 -6.35418 -5.37585 -2.58161 2.11058 2.33882 3.27149 3.42590 3.51804 3.58163 3.61218 3.63340 3.66533 4.71417 4.81492 4.83328 4.90998 4.98089 4.99056 5.14080 5.23219 5.28589 5.39927 5.44682 5.48273 5.53818 5.67938 5.72887 5.78501 5.83997 5.88358 5.93502 5.98119 6.05876 6.14770 6.18141 6.21673 6.23716 6.42296 6.51072 6.54498 6.57353 6.87446 6.90729 7.02928 7.13854 7.46369 8.02062 8.05015 8.06294 8.63447 8.77558 9.10646 9.89032 10.46278 10.81458 11.85721 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010087 B = 0.006195 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.169530 B = 4518.917488 C = 6515.380832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.182 3.818 3 H 0.059 0.941 4 N -0.689 5.689 5 C -0.189 4.189 6 H 0.058 0.942 7 C -0.019 4.019 8 N -0.930 5.930 9 Si 0.891 3.109 10 H -0.292 1.292 11 H -0.295 1.295 12 H -0.295 1.295 13 C 0.150 3.850 14 H 0.064 0.936 15 C -0.127 4.127 16 C -0.118 4.118 17 C -0.133 4.133 18 C 0.111 3.889 19 N -0.617 5.617 20 C 0.452 3.548 21 O -0.412 6.412 22 C 0.151 3.849 23 N -0.435 5.435 24 N -0.280 5.280 25 C 0.249 3.751 26 N -0.562 5.562 27 C 0.105 3.895 28 C 0.656 3.344 29 O -0.528 6.528 30 H 0.041 0.959 31 H 0.055 0.945 32 H 0.035 0.965 33 H 0.377 0.623 34 H 0.248 0.752 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.109 0.891 44 H 0.107 0.893 45 H 0.224 0.776 46 H 0.087 0.913 47 H 0.076 0.924 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.452 6.761 -12.905 16.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.072 3.928 3 H 0.076 0.924 4 N -0.330 5.330 5 C -0.321 4.321 6 H 0.076 0.924 7 C -0.214 4.214 8 N -0.580 5.580 9 Si 0.725 3.275 10 H -0.220 1.220 11 H -0.222 1.222 12 H -0.222 1.222 13 C 0.047 3.953 14 H 0.082 0.918 15 C -0.166 4.166 16 C -0.156 4.156 17 C -0.172 4.172 18 C -0.013 4.013 19 N -0.357 5.357 20 C 0.234 3.766 21 O -0.277 6.277 22 C 0.026 3.974 23 N -0.256 5.256 24 N -0.101 5.101 25 C -0.050 4.050 26 N -0.292 5.292 27 C -0.038 4.038 28 C 0.355 3.645 29 O -0.398 6.398 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.210 0.790 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.240 0.760 46 H 0.106 0.894 47 H 0.095 0.905 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.795 6.661 -12.890 16.471 hybrid contribution 0.238 -0.170 1.682 1.708 sum 8.034 6.491 -11.208 15.241 Atomic orbital electron populations 1.22555 0.99935 1.00078 1.00265 1.20418 0.90339 0.96846 0.85171 0.92373 1.42281 1.71678 1.17230 1.01792 1.18834 1.30985 0.98018 0.84269 0.92404 1.24525 1.03019 0.96968 0.96863 1.69599 1.48039 1.12876 1.27503 0.86474 0.77148 0.78080 0.85814 1.21951 1.22174 1.22241 1.21471 0.78772 0.99439 0.95646 0.91846 1.22001 1.00001 1.00554 0.94048 1.21516 0.95242 1.00891 0.97907 1.21910 0.96299 1.01427 0.97530 1.21580 0.96136 0.98665 0.84894 1.47784 1.07025 1.62641 1.18206 1.20674 0.89063 0.83455 0.83362 1.91198 1.67557 1.38640 1.30262 1.21154 0.93667 0.97874 0.84749 1.48088 1.60992 1.03757 1.12723 1.76785 1.19761 0.95973 1.17618 1.25697 0.98381 0.92205 0.88764 1.45776 1.60600 1.07944 1.14897 1.21705 1.00875 1.03008 0.78179 1.16585 0.80977 0.85516 0.81385 1.91149 1.59551 1.11745 1.77389 0.93962 0.92580 0.94612 0.78990 0.94243 0.90811 0.91699 0.92179 0.91977 0.91618 0.91314 0.91872 0.90621 0.87349 0.87545 0.75996 0.89419 0.90491 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.26 8.66 37.16 0.32 -2.94 16 2 C 0.18 3.91 1.78 -67.93 -0.12 3.79 16 3 H 0.06 1.40 6.47 -51.93 -0.34 1.06 16 4 N -0.69 -18.45 3.05 -53.42 -0.16 -18.62 16 5 C -0.19 -5.67 8.10 -15.06 -0.12 -5.80 16 6 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 7 C -0.02 -0.60 5.50 -17.43 -0.10 -0.70 16 8 N -0.93 -30.58 13.06 55.49 0.72 -29.86 16 9 Si 0.89 24.53 29.55 -169.99 -5.02 19.51 16 10 H -0.29 -7.89 7.11 56.52 0.40 -7.48 16 11 H -0.30 -8.16 7.11 56.52 0.40 -7.76 16 12 H -0.29 -8.01 7.11 56.52 0.40 -7.60 16 13 C 0.15 2.58 2.56 -67.60 -0.17 2.41 16 14 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 15 C -0.13 -1.69 4.63 -26.57 -0.12 -1.81 16 16 C -0.12 -1.23 5.89 -26.65 -0.16 -1.39 16 17 C -0.13 -1.30 6.08 -26.61 -0.16 -1.46 16 18 C 0.11 1.29 6.32 -3.71 -0.02 1.27 16 19 N -0.62 -10.13 2.97 -165.21 -0.49 -10.62 16 20 C 0.45 8.98 7.42 -10.98 -0.08 8.90 16 21 O -0.41 -10.24 9.26 5.55 0.05 -10.19 16 22 C 0.15 2.55 5.28 -5.19 -0.03 2.52 16 23 N -0.43 -8.36 3.11 -66.31 -0.21 -8.57 16 24 N -0.28 -4.69 12.53 29.87 0.37 -4.32 16 25 C 0.25 3.43 12.61 -89.13 -1.12 2.31 16 26 N -0.56 -9.47 3.14 -130.11 -0.41 -9.87 16 27 C 0.10 1.36 11.08 59.84 0.66 2.02 16 28 C 0.66 14.19 8.61 -86.73 -0.75 13.44 16 29 O -0.53 -13.75 17.77 5.09 0.09 -13.66 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 1.21 7.88 -51.93 -0.41 0.80 16 32 H 0.03 0.57 6.82 -51.93 -0.35 0.22 16 33 H 0.38 11.05 7.70 -40.82 -0.31 10.74 16 34 H 0.25 8.09 8.31 -40.82 -0.34 7.75 16 35 H 0.07 0.93 6.82 -51.93 -0.35 0.58 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 0.73 5.98 -51.93 -0.31 0.42 16 43 H 0.11 1.75 8.09 -51.93 -0.42 1.33 16 44 H 0.11 1.37 7.46 -51.93 -0.39 0.98 16 45 H 0.22 1.69 8.06 -52.49 -0.42 1.26 16 46 H 0.09 0.71 8.07 -51.93 -0.42 0.29 16 47 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 381.19 15.07 5.74 5.74 Total: -1.00 -41.39 381.19 -8.78 -50.17 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -7.50 Total: 7.71 kcal Atomic # 6 Polarization: 24.54 SS G_CDS: -1.97 Total: 22.57 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -0.17 Total: -81.86 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: 0.14 Total: -23.85 kcal Atomic # 14 Polarization: 24.53 SS G_CDS: -5.02 Total: 19.51 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -41.39 -8.78 -50.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752141017.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.652 kcal (2) G-P(sol) polarization free energy of solvation -41.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds