Wall clock time and date at job start Tue Mar 31 2020 20:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.47206 * 109.47168 * 240.00422 * 2 1 3 5 5 N 2.60808 * 109.47224 * 240.00296 * 2 1 3 6 6 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 7 7 O 1.21283 * 120.00261 * 120.00003 * 6 2 1 8 8 N 1.34777 * 120.00075 * 300.00543 * 6 2 1 9 9 C 1.46500 * 120.00084 * 180.02562 * 8 6 2 10 10 C 1.52996 * 109.47249 * 179.97438 * 9 8 6 11 11 N 1.46894 * 109.47225 * 180.02562 * 10 9 8 12 12 C 1.46957 * 110.99591 * 293.79424 * 11 10 9 13 13 C 1.53058 * 109.36380 * 176.81531 * 12 11 10 14 14 N 1.46959 * 109.36616 * 58.39895 * 13 12 11 15 15 C 1.46899 * 110.99942 * 176.81317 * 14 13 12 16 16 C 1.50698 * 109.47059 * 293.80223 * 15 14 13 17 17 O 1.21295 * 120.00059 * 359.97438 * 16 15 14 18 18 N 1.34779 * 120.00125 * 180.02562 * 16 15 14 19 19 C 1.37092 * 120.00338 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00297 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00414 * 179.97438 * 19 18 16 22 22 N 1.31418 * 119.99754 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00414 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47022 * 59.99936 * 23 21 19 25 25 H 1.48503 * 109.46989 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47022 * 299.99918 * 23 21 19 27 27 C 1.46956 * 110.88135 * 300.68467 * 14 13 12 28 28 C 1.46957 * 110.99956 * 170.00123 * 11 10 9 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 0.96996 * 119.99636 * 359.97438 * 8 6 2 33 33 H 1.09001 * 109.47049 * 299.99628 * 9 8 6 34 34 H 1.09000 * 109.47381 * 59.99594 * 9 8 6 35 35 H 1.09001 * 109.46997 * 299.99913 * 10 9 8 36 36 H 1.08996 * 109.47134 * 59.99161 * 10 9 8 37 37 H 1.08995 * 109.49372 * 296.77716 * 12 11 10 38 38 H 1.08994 * 109.49004 * 56.84856 * 12 11 10 39 39 H 1.09004 * 109.48469 * 298.43426 * 13 12 11 40 40 H 1.08993 * 109.49227 * 178.37234 * 13 12 11 41 41 H 1.09000 * 109.47276 * 53.80313 * 15 14 13 42 42 H 1.08996 * 109.46950 * 173.80452 * 15 14 13 43 43 H 0.97006 * 119.99551 * 359.97438 * 18 16 15 44 44 H 0.96995 * 119.99858 * 179.97438 * 22 21 19 45 45 H 1.08998 * 109.48467 * 299.34952 * 27 14 13 46 46 H 1.08993 * 109.48446 * 179.28479 * 27 14 13 47 47 H 1.09003 * 109.48688 * 303.14844 * 28 11 10 48 48 H 1.09004 * 109.49340 * 63.21826 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6938 -1.2020 5 7 2.3994 -1.2293 -2.1295 6 6 2.0324 -0.7104 1.2304 7 8 2.7297 -1.6965 1.1191 8 7 1.7068 -0.2501 2.4545 9 6 2.1956 -0.9404 3.6507 10 6 1.6860 -0.2190 4.8999 11 7 2.1767 -0.9108 6.0993 12 6 1.5889 -2.2531 6.2104 13 6 2.1841 -2.9687 7.4254 14 7 1.9177 -2.1784 8.6354 15 6 2.4083 -2.8702 9.8348 16 6 1.6096 -4.1299 10.0501 17 8 0.7189 -4.4222 9.2804 18 7 1.8843 -4.9311 11.0985 19 6 1.1581 -6.0772 11.2942 20 1 0.3655 -6.3381 10.6084 21 6 1.4416 -6.9035 12.3747 22 7 2.4063 -6.5865 13.2089 23 14 0.4515 -8.4649 12.6417 24 1 0.6011 -9.3537 11.4615 25 1 0.9472 -9.1640 13.8545 26 1 -0.9811 -8.1179 12.8217 27 6 2.5054 -0.8360 8.5242 28 6 1.9101 -0.1205 7.3092 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.1493 0.5387 2.5435 33 1 1.8328 -1.9682 3.6508 34 1 3.2856 -0.9399 3.6505 35 1 2.0492 0.8088 4.8996 36 1 0.5961 -0.2190 4.9003 37 1 0.5090 -2.1684 6.3314 38 1 1.8105 -2.8229 5.3081 39 1 3.2605 -3.0777 7.2920 40 1 1.7284 -3.9536 7.5267 41 1 3.4599 -3.1249 9.7027 42 1 2.2985 -2.2179 10.7010 43 1 2.5964 -4.6970 11.7142 44 1 2.6040 -7.1631 13.9634 45 1 3.5853 -0.9208 8.4033 46 1 2.2838 -0.2662 9.4265 47 1 2.3660 0.8645 7.2080 48 1 0.8338 -0.0115 7.4427 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752362985.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:46 Heat of formation + Delta-G solvation = -26.655474 kcal Electronic energy + Delta-G solvation = -28277.714151 eV Core-core repulsion = 24175.085821 eV Total energy + Delta-G solvation = -4102.628330 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.54978 -39.46262 -38.02422 -37.05956 -36.02469 -34.72480 -33.89470 -33.61974 -31.26023 -30.86640 -30.02131 -27.62532 -25.90998 -25.13840 -23.82080 -23.44144 -22.07757 -21.45046 -19.74510 -19.18611 -18.55674 -17.86159 -17.74674 -16.62248 -16.18753 -15.97304 -15.54516 -15.47530 -14.93537 -14.76102 -14.70546 -14.57015 -14.33134 -13.93731 -13.86014 -13.75391 -13.57155 -13.35762 -13.23482 -13.12328 -12.85462 -12.41997 -12.32981 -12.14801 -12.08481 -11.85110 -11.76967 -11.50608 -11.32657 -11.13712 -11.03171 -10.71715 -10.64208 -10.43436 -10.36325 -10.20635 -9.54479 -9.46029 -8.57294 -8.40533 -7.97215 -7.83499 -6.41050 -3.81845 1.99596 2.01342 2.36547 2.78784 3.20415 3.26199 3.27555 3.30419 3.77182 3.91058 3.99920 4.12165 4.20418 4.25109 4.37384 4.49271 4.72029 4.86666 4.88576 5.00635 5.02164 5.09010 5.19183 5.25703 5.33975 5.37500 5.43018 5.50115 5.54892 5.62683 5.65682 5.77312 5.86686 5.87842 5.91748 5.96463 6.20460 6.28896 6.40953 6.80658 6.85493 6.89927 7.12360 7.29597 7.41040 7.55576 7.63425 8.06853 8.62500 9.18668 9.55215 10.07014 10.76574 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018661 B = 0.001751 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.132282 B =15983.392136 C =16956.498892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.010 4.010 3 H 0.142 0.858 4 C 0.219 3.781 5 N -0.409 5.409 6 C 0.522 3.478 7 O -0.523 6.523 8 N -0.721 5.721 9 C 0.119 3.881 10 C 0.046 3.954 11 N -0.538 5.538 12 C 0.057 3.943 13 C 0.055 3.945 14 N -0.518 5.518 15 C 0.047 3.953 16 C 0.444 3.556 17 O -0.579 6.579 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.055 3.945 28 C 0.063 3.937 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.403 0.597 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.042 0.958 37 H 0.047 0.953 38 H 0.078 0.922 39 H 0.032 0.968 40 H 0.108 0.892 41 H 0.048 0.952 42 H 0.088 0.912 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.039 0.961 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.610 21.159 -17.711 27.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.034 4.034 3 H 0.159 0.841 4 C -0.101 4.101 5 N -0.084 5.084 6 C 0.305 3.695 7 O -0.397 6.397 8 N -0.374 5.374 9 C -0.004 4.004 10 C -0.083 4.083 11 N -0.263 5.263 12 C -0.071 4.071 13 C -0.073 4.073 14 N -0.242 5.242 15 C -0.084 4.084 16 C 0.229 3.771 17 O -0.463 6.463 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.073 4.073 28 C -0.065 4.065 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.237 0.763 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.050 0.950 40 H 0.126 0.874 41 H 0.066 0.934 42 H 0.106 0.894 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.057 0.943 46 H 0.097 0.903 47 H 0.095 0.905 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.047 19.303 -19.510 27.466 hybrid contribution -0.326 0.000 1.162 1.207 sum -1.373 19.304 -18.349 26.668 Atomic orbital electron populations 1.21822 0.89451 1.04561 1.04500 1.18831 0.98849 1.00182 0.85578 0.84093 1.28065 0.93935 0.94053 0.94019 1.81218 1.07520 1.07591 1.12091 1.19954 0.80718 0.84785 0.84087 1.90833 1.36884 1.25606 1.86423 1.45770 1.53912 1.32340 1.05399 1.21415 1.00495 0.96492 0.82025 1.22173 0.98043 0.98220 0.89856 1.62094 1.59003 1.03449 1.01792 1.22267 0.97620 0.88639 0.98536 1.22329 0.98336 0.98886 0.87777 1.61757 1.58408 1.01872 1.02203 1.21829 0.96925 0.96130 0.93564 1.19746 0.87392 0.85774 0.84176 1.90475 1.34169 1.74866 1.46826 1.41862 1.32957 1.20991 1.24213 1.19642 1.14893 0.98065 1.10282 0.87982 1.25256 0.97118 0.99746 0.95791 1.69605 1.30154 1.39168 1.15384 0.85924 0.79637 0.81026 0.77662 1.19923 1.20998 1.19930 1.22169 0.97018 0.90725 0.97429 1.22120 0.99510 0.96031 0.88849 0.89801 0.90853 0.90122 0.76282 0.90766 0.90139 0.90199 0.93979 0.93494 0.90327 0.95005 0.87421 0.93387 0.89388 0.77491 0.91841 0.94257 0.90339 0.90491 0.93730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.22 9.04 37.16 0.34 0.11 16 2 C -0.01 -0.04 3.10 -94.56 -0.29 -0.33 16 3 H 0.14 -0.01 8.14 -51.93 -0.42 -0.43 16 4 C 0.22 1.89 13.88 -20.76 -0.29 1.60 16 5 N -0.41 -4.94 18.54 42.15 0.78 -4.15 16 6 C 0.52 3.77 7.14 -10.99 -0.08 3.69 16 7 O -0.52 -6.75 16.03 5.55 0.09 -6.66 16 8 N -0.72 -3.47 5.45 -60.30 -0.33 -3.80 16 9 C 0.12 0.89 5.61 -4.04 -0.02 0.87 16 10 C 0.05 0.31 5.07 -3.83 -0.02 0.30 16 11 N -0.54 -5.56 4.71 -234.47 -1.10 -6.66 16 12 C 0.06 0.73 5.41 -3.76 -0.02 0.71 16 13 C 0.05 0.88 5.26 -3.76 -0.02 0.86 16 14 N -0.52 -8.37 4.45 -235.91 -1.05 -9.42 16 15 C 0.05 0.82 5.45 -4.98 -0.03 0.80 16 16 C 0.44 10.29 7.48 -10.99 -0.08 10.21 16 17 O -0.58 -15.25 13.92 5.54 0.08 -15.17 16 18 N -0.56 -14.13 5.29 -10.96 -0.06 -14.19 16 19 C -0.30 -8.27 9.68 -14.94 -0.14 -8.42 16 20 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.41 13.05 55.50 0.72 -23.68 16 23 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 C 0.06 0.67 5.61 -3.77 -0.02 0.65 16 28 C 0.06 0.63 5.61 -3.77 -0.02 0.61 16 29 H 0.08 -0.07 7.56 -51.93 -0.39 -0.46 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.05 8.14 -51.93 -0.42 -0.38 16 32 H 0.40 0.44 7.89 -40.82 -0.32 0.11 16 33 H 0.07 0.70 6.50 -51.93 -0.34 0.36 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.41 8.03 -51.93 -0.42 -0.01 16 36 H 0.04 0.27 8.12 -51.93 -0.42 -0.15 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.93 6.34 -51.93 -0.33 0.60 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.11 2.11 5.85 -51.93 -0.30 1.80 16 41 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 42 H 0.09 1.39 8.03 -51.93 -0.42 0.97 16 43 H 0.39 9.42 7.90 -40.82 -0.32 9.09 16 44 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 47 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 48 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 397.21 15.07 5.99 5.99 Total: -1.00 -36.58 397.21 -8.12 -44.70 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -7.42 Total: 4.92 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: -0.80 Total: 12.16 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: -1.03 Total: -61.91 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: 0.17 Total: -21.82 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.58 -8.12 -44.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752362985.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.043 kcal (2) G-P(sol) polarization free energy of solvation -36.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds