Wall clock time and date at job start Tue Mar 31 2020 20:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.47206 * 109.47168 * 240.00422 * 2 1 3 5 5 N 2.60808 * 109.47224 * 240.00296 * 2 1 3 6 6 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 7 7 O 1.21283 * 120.00261 * 120.00003 * 6 2 1 8 8 N 1.34777 * 120.00075 * 300.00543 * 6 2 1 9 9 C 1.46500 * 120.00084 * 180.02562 * 8 6 2 10 10 C 1.52996 * 109.47249 * 179.97438 * 9 8 6 11 11 N 1.46894 * 109.47225 * 180.02562 * 10 9 8 12 12 C 1.46957 * 110.99591 * 293.79424 * 11 10 9 13 13 C 1.53058 * 109.36380 * 176.81531 * 12 11 10 14 14 N 1.46959 * 109.36616 * 58.39895 * 13 12 11 15 15 C 1.46899 * 110.99942 * 176.81317 * 14 13 12 16 16 C 1.50698 * 109.47059 * 293.80223 * 15 14 13 17 17 O 1.21295 * 120.00059 * 359.97438 * 16 15 14 18 18 N 1.34779 * 120.00125 * 180.02562 * 16 15 14 19 19 C 1.37092 * 120.00338 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00297 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00414 * 179.97438 * 19 18 16 22 22 N 1.31418 * 119.99754 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00414 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47022 * 59.99936 * 23 21 19 25 25 H 1.48503 * 109.46989 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47022 * 299.99918 * 23 21 19 27 27 C 1.46956 * 110.88135 * 300.68467 * 14 13 12 28 28 C 1.46957 * 110.99956 * 170.00123 * 11 10 9 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 0.96996 * 119.99636 * 359.97438 * 8 6 2 33 33 H 1.09001 * 109.47049 * 299.99628 * 9 8 6 34 34 H 1.09000 * 109.47381 * 59.99594 * 9 8 6 35 35 H 1.09001 * 109.46997 * 299.99913 * 10 9 8 36 36 H 1.08996 * 109.47134 * 59.99161 * 10 9 8 37 37 H 1.08995 * 109.49372 * 296.77716 * 12 11 10 38 38 H 1.08994 * 109.49004 * 56.84856 * 12 11 10 39 39 H 1.09004 * 109.48469 * 298.43426 * 13 12 11 40 40 H 1.08993 * 109.49227 * 178.37234 * 13 12 11 41 41 H 1.09000 * 109.47276 * 53.80313 * 15 14 13 42 42 H 1.08996 * 109.46950 * 173.80452 * 15 14 13 43 43 H 0.97006 * 119.99551 * 359.97438 * 18 16 15 44 44 H 0.96995 * 119.99858 * 179.97438 * 22 21 19 45 45 H 1.08998 * 109.48467 * 299.34952 * 27 14 13 46 46 H 1.08993 * 109.48446 * 179.28479 * 27 14 13 47 47 H 1.09003 * 109.48688 * 303.14844 * 28 11 10 48 48 H 1.09004 * 109.49340 * 63.21826 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6938 -1.2020 5 7 2.3994 -1.2293 -2.1295 6 6 2.0324 -0.7104 1.2304 7 8 2.7297 -1.6965 1.1191 8 7 1.7068 -0.2501 2.4545 9 6 2.1956 -0.9404 3.6507 10 6 1.6860 -0.2190 4.8999 11 7 2.1767 -0.9108 6.0993 12 6 1.5889 -2.2531 6.2104 13 6 2.1841 -2.9687 7.4254 14 7 1.9177 -2.1784 8.6354 15 6 2.4083 -2.8702 9.8348 16 6 1.6096 -4.1299 10.0501 17 8 0.7189 -4.4222 9.2804 18 7 1.8843 -4.9311 11.0985 19 6 1.1581 -6.0772 11.2942 20 1 0.3655 -6.3381 10.6084 21 6 1.4416 -6.9035 12.3747 22 7 2.4063 -6.5865 13.2089 23 14 0.4515 -8.4649 12.6417 24 1 0.6011 -9.3537 11.4615 25 1 0.9472 -9.1640 13.8545 26 1 -0.9811 -8.1179 12.8217 27 6 2.5054 -0.8360 8.5242 28 6 1.9101 -0.1205 7.3092 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.1493 0.5387 2.5435 33 1 1.8328 -1.9682 3.6508 34 1 3.2856 -0.9399 3.6505 35 1 2.0492 0.8088 4.8996 36 1 0.5961 -0.2190 4.9003 37 1 0.5090 -2.1684 6.3314 38 1 1.8105 -2.8229 5.3081 39 1 3.2605 -3.0777 7.2920 40 1 1.7284 -3.9536 7.5267 41 1 3.4599 -3.1249 9.7027 42 1 2.2985 -2.2179 10.7010 43 1 2.5964 -4.6970 11.7142 44 1 2.6040 -7.1631 13.9634 45 1 3.5853 -0.9208 8.4033 46 1 2.2838 -0.2662 9.4265 47 1 2.3660 0.8645 7.2080 48 1 0.8338 -0.0115 7.4427 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752362985.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:45 Heat of formation + Delta-G solvation = -58.181637 kcal Electronic energy + Delta-G solvation = -28279.081228 eV Core-core repulsion = 24175.085821 eV Total energy + Delta-G solvation = -4103.995407 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.16676 -40.69303 -39.54703 -37.78850 -37.00243 -35.93787 -35.39833 -34.19670 -33.26361 -31.85799 -30.98761 -28.78602 -26.89208 -26.07356 -25.06332 -24.55630 -22.83603 -22.05155 -21.07152 -20.70690 -19.86041 -19.11456 -18.23763 -17.78330 -17.28537 -16.86772 -16.60025 -16.40504 -16.32784 -16.00708 -15.80067 -15.53020 -15.34416 -15.25210 -15.09903 -14.76453 -14.55811 -14.34601 -14.08827 -13.83406 -13.72879 -13.48171 -13.26267 -13.14675 -12.97469 -12.80645 -12.73970 -12.68140 -12.42707 -12.40081 -12.24789 -12.18862 -12.11836 -11.83419 -11.64476 -11.41810 -10.99538 -10.25273 -10.13814 -9.98689 -9.37199 -9.15353 -8.45244 -5.93701 1.39579 1.39906 1.41599 1.47682 1.52377 1.72067 2.07173 2.22136 2.29095 2.78207 2.80360 3.04945 3.21593 3.40862 3.72702 3.86425 3.94779 3.95961 4.12098 4.18663 4.21580 4.26814 4.36160 4.43508 4.50617 4.51527 4.57240 4.64846 4.68701 4.85294 4.86993 4.89250 4.96595 4.98467 5.00238 5.12810 5.15641 5.30267 5.35418 5.41724 5.85933 5.96369 6.04581 6.18621 6.27936 6.39287 6.55749 6.62392 7.14438 7.18355 7.58362 8.14330 8.71889 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018661 B = 0.001751 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.132282 B =15983.392136 C =16956.498892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.001 3.999 3 H 0.194 0.806 4 C 0.240 3.760 5 N -0.481 5.481 6 C 0.520 3.480 7 O -0.589 6.589 8 N -0.698 5.698 9 C 0.125 3.875 10 C 0.053 3.947 11 N -0.544 5.544 12 C 0.070 3.930 13 C 0.058 3.942 14 N -0.534 5.534 15 C 0.059 3.941 16 C 0.441 3.559 17 O -0.614 6.614 18 N -0.575 5.575 19 C -0.332 4.332 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.992 3.008 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.272 1.272 27 C 0.052 3.948 28 C 0.066 3.934 29 H 0.117 0.883 30 H 0.051 0.949 31 H 0.096 0.904 32 H 0.426 0.574 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.112 0.888 36 H 0.054 0.946 37 H 0.033 0.967 38 H 0.081 0.919 39 H 0.030 0.970 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.112 0.888 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.043 0.957 46 H 0.095 0.905 47 H 0.113 0.887 48 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.181 24.517 -17.451 30.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 H 0.211 0.789 4 C -0.079 4.079 5 N -0.157 5.157 6 C 0.305 3.695 7 O -0.468 6.468 8 N -0.352 5.352 9 C 0.000 4.000 10 C -0.075 4.075 11 N -0.270 5.270 12 C -0.059 4.059 13 C -0.071 4.071 14 N -0.259 5.259 15 C -0.073 4.073 16 C 0.228 3.772 17 O -0.500 6.500 18 N -0.212 5.212 19 C -0.462 4.462 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.816 3.184 24 H -0.199 1.199 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.075 4.075 28 C -0.061 4.061 29 H 0.136 0.864 30 H 0.070 0.930 31 H 0.115 0.885 32 H 0.265 0.735 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.130 0.870 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.099 0.901 39 H 0.048 0.952 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.130 0.870 43 H 0.229 0.771 44 H 0.086 0.914 45 H 0.061 0.939 46 H 0.113 0.887 47 H 0.131 0.869 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.636 22.740 -19.236 29.830 hybrid contribution -0.153 -0.971 1.080 1.460 sum -1.790 21.770 -18.156 28.404 Atomic orbital electron populations 1.21921 0.87159 1.04002 1.07010 1.19193 1.00288 1.01325 0.81518 0.78922 1.29033 0.92116 0.92621 0.94086 1.81222 1.09967 1.09833 1.14721 1.20540 0.79588 0.83940 0.85422 1.90822 1.40029 1.28639 1.87357 1.45517 1.53234 1.32488 1.03947 1.21191 0.99492 0.95833 0.83483 1.22211 0.98734 0.98991 0.87564 1.62056 1.59054 1.02527 1.03343 1.22022 0.96495 0.90391 0.96961 1.22153 0.97889 0.97568 0.89466 1.61748 1.59417 1.03426 1.01342 1.21708 0.96330 0.93761 0.95456 1.20799 0.86922 0.86811 0.82621 1.90455 1.35863 1.76016 1.47708 1.41933 1.33180 1.20996 1.25101 1.19612 1.15642 0.99984 1.10968 0.90351 1.26017 0.97934 1.02268 0.95046 1.69667 1.30763 1.40141 1.15561 0.85008 0.78238 0.77340 0.77858 1.19873 1.19507 1.19690 1.22346 0.97203 0.88452 0.99527 1.22180 0.99392 0.96985 0.87591 0.86430 0.92988 0.88492 0.73493 0.93301 0.91839 0.86991 0.92795 0.94867 0.90087 0.95165 0.91895 0.91985 0.86956 0.77069 0.91354 0.93883 0.88672 0.86909 0.94206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.04 9.04 71.98 0.65 0.69 16 2 C 0.00 0.00 3.10 -13.35 -0.04 -0.04 16 3 H 0.19 -1.01 8.14 -2.39 -0.02 -1.03 16 4 C 0.24 4.01 13.88 89.44 1.24 5.25 16 5 N -0.48 -12.04 18.54 20.01 0.37 -11.67 16 6 C 0.52 6.70 7.14 87.66 0.63 7.32 16 7 O -0.59 -15.56 16.03 -3.04 -0.05 -15.61 16 8 N -0.70 -4.75 5.45 -463.07 -2.52 -7.27 16 9 C 0.12 1.67 5.61 86.38 0.48 2.16 16 10 C 0.05 0.55 5.07 86.30 0.44 0.98 16 11 N -0.54 -9.98 4.71 -895.73 -4.22 -14.20 16 12 C 0.07 1.77 5.41 86.31 0.47 2.24 16 13 C 0.06 1.89 5.26 86.31 0.45 2.34 16 14 N -0.53 -16.92 4.45 -900.28 -4.00 -20.92 16 15 C 0.06 2.03 5.45 85.56 0.47 2.50 16 16 C 0.44 21.04 7.48 87.66 0.66 21.70 16 17 O -0.61 -33.79 13.92 -3.08 -0.04 -33.84 16 18 N -0.57 -29.63 5.29 -306.98 -1.62 -31.25 16 19 C -0.33 -18.97 9.68 84.04 0.81 -18.16 16 20 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 21 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 22 N -0.92 -49.86 13.05 21.66 0.28 -49.58 16 23 Si 0.99 43.24 29.55 68.60 2.03 45.26 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 27 C 0.05 1.14 5.61 86.31 0.48 1.62 16 28 C 0.07 1.11 5.61 86.31 0.48 1.59 16 29 H 0.12 -0.79 7.56 -2.39 -0.02 -0.81 16 30 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.10 -0.26 8.14 -2.38 -0.02 -0.27 16 32 H 0.43 -1.11 7.89 -92.71 -0.73 -1.84 16 33 H 0.05 0.93 6.50 -2.39 -0.02 0.91 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.11 0.53 8.03 -2.39 -0.02 0.51 16 36 H 0.05 0.49 8.12 -2.39 -0.02 0.47 16 37 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 1.99 6.34 -2.39 -0.02 1.97 16 39 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.06 2.63 5.85 -2.39 -0.01 2.61 16 41 H 0.06 1.99 8.12 -2.39 -0.02 1.97 16 42 H 0.11 3.35 8.03 -2.39 -0.02 3.33 16 43 H 0.40 19.39 7.90 -92.70 -0.73 18.66 16 44 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 45 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.10 1.76 8.07 -2.39 -0.02 1.74 16 47 H 0.11 1.15 8.07 -2.39 -0.02 1.13 16 48 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 Total: -1.00 -86.85 397.21 -2.55 -89.40 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -0.47 Total: 19.70 kcal Atomic # 6 Polarization: 22.28 SS G_CDS: 7.69 Total: 29.97 kcal Atomic # 7 Polarization: -123.18 SS G_CDS: -11.71 Total: -134.90 kcal Atomic # 8 Polarization: -49.36 SS G_CDS: -0.09 Total: -49.45 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -86.85 -2.55 -89.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752362985.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.223 kcal (2) G-P(sol) polarization free energy of solvation -86.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds