Wall clock time and date at job start Tue Mar 31 2020 20:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 C 1.47202 * 109.46974 * 119.99297 * 2 1 3 5 5 N 2.60801 * 109.46928 * 119.99540 * 2 1 3 6 6 C 1.50700 * 109.47442 * 239.99535 * 2 1 3 7 7 O 1.21283 * 119.99803 * 239.99993 * 6 2 1 8 8 N 1.34777 * 119.99675 * 60.27868 * 6 2 1 9 9 C 1.46497 * 119.99525 * 179.72583 * 8 6 2 10 10 C 1.52999 * 109.46992 * 179.97438 * 9 8 6 11 11 N 1.46900 * 109.47276 * 179.97438 * 10 9 8 12 12 C 1.46956 * 111.00204 * 293.79786 * 11 10 9 13 13 C 1.53051 * 109.36804 * 176.80942 * 12 11 10 14 14 N 1.46956 * 109.36247 * 58.40379 * 13 12 11 15 15 C 1.46900 * 111.00062 * 176.81191 * 14 13 12 16 16 C 1.50697 * 109.47080 * 293.79965 * 15 14 13 17 17 O 1.21291 * 119.99651 * 0.02562 * 16 15 14 18 18 N 1.34772 * 119.99712 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99561 * 179.97438 * 18 16 15 20 20 H 1.07989 * 120.00310 * 0.02562 * 19 18 16 21 21 C 1.38954 * 119.99690 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99745 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00162 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.46900 * 89.99636 * 23 21 19 25 25 H 1.48492 * 109.47159 * 209.99887 * 23 21 19 26 26 H 1.48496 * 109.46784 * 329.99990 * 23 21 19 27 27 C 1.46968 * 110.88215 * 300.67979 * 14 13 12 28 28 C 1.46956 * 111.00062 * 170.00014 * 11 10 9 29 29 H 1.08996 * 109.47637 * 300.00483 * 1 2 3 30 30 H 1.09004 * 109.46762 * 60.00268 * 1 2 3 31 31 H 1.08995 * 109.47223 * 179.97438 * 1 2 3 32 32 H 0.97000 * 119.99894 * 359.71837 * 8 6 2 33 33 H 1.08995 * 109.47421 * 299.99467 * 9 8 6 34 34 H 1.09001 * 109.47621 * 60.00103 * 9 8 6 35 35 H 1.09009 * 109.47378 * 299.99899 * 10 9 8 36 36 H 1.08993 * 109.47209 * 59.99808 * 10 9 8 37 37 H 1.08995 * 109.48679 * 296.77986 * 12 11 10 38 38 H 1.09007 * 109.48576 * 56.84413 * 12 11 10 39 39 H 1.09004 * 109.48919 * 298.43856 * 13 12 11 40 40 H 1.08988 * 109.48933 * 178.36985 * 13 12 11 41 41 H 1.08999 * 109.46779 * 53.80101 * 15 14 13 42 42 H 1.09005 * 109.47110 * 173.79933 * 15 14 13 43 43 H 0.97001 * 120.00728 * 0.02562 * 18 16 15 44 44 H 0.97006 * 119.99799 * 180.02562 * 22 21 19 45 45 H 1.08995 * 109.48528 * 299.35405 * 27 14 13 46 46 H 1.08998 * 109.50436 * 179.29754 * 27 14 13 47 47 H 1.09001 * 109.49061 * 303.15589 * 28 11 10 48 48 H 1.08997 * 109.49053 * 63.21946 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6938 1.2020 5 7 2.3992 -1.2293 2.1296 6 6 2.0324 -0.7105 -1.2304 7 8 2.7297 -1.6966 -1.1189 8 7 1.7114 -0.2468 -2.4545 9 6 2.2048 -0.9340 -3.6505 10 6 1.6990 -0.2100 -4.8998 11 7 2.1942 -0.8987 -6.0992 12 6 3.6559 -0.7893 -6.2035 13 6 4.1390 -1.5846 -7.4187 14 7 3.4873 -1.0671 -8.6300 15 6 3.9825 -1.7558 -9.8294 16 6 5.4368 -1.4197 -10.0372 17 8 6.0048 -0.6796 -9.2621 18 7 6.1062 -1.9423 -11.0836 19 6 7.4292 -1.6360 -11.2729 20 1 7.9348 -0.9765 -10.5834 21 6 8.1196 -2.1752 -12.3516 22 7 9.3877 -1.8821 -12.5327 23 14 7.2451 -3.3167 -13.5440 24 1 6.6470 -2.5188 -14.6444 25 1 8.2199 -4.2847 -14.1077 26 1 6.1733 -4.0537 -12.8278 27 6 2.0254 -1.1764 -8.5258 28 6 1.5425 -0.3812 -7.3105 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.1537 0.5418 -2.5435 33 1 3.2948 -0.9335 -3.6463 34 1 1.8419 -1.9618 -3.6548 35 1 0.6089 -0.2108 -4.9040 36 1 2.0614 0.8179 -4.8959 37 1 3.9348 0.2579 -6.3199 38 1 4.1160 -1.1903 -5.3003 39 1 3.8840 -2.6365 -7.2897 40 1 5.2197 -1.4811 -7.5148 41 1 3.8732 -2.8327 -9.7011 42 1 3.4074 -1.4330 -10.6972 43 1 5.6520 -2.5344 -11.7033 44 1 9.8696 -2.2582 -13.2860 45 1 1.7465 -2.2236 -8.4094 46 1 1.5652 -0.7757 -9.4289 47 1 0.4617 -0.4846 -7.2144 48 1 1.7974 0.6706 -7.4395 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752362986.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:48 Heat of formation + Delta-G solvation = -19.484309 kcal Electronic energy + Delta-G solvation = -28300.495527 eV Core-core repulsion = 24198.178162 eV Total energy + Delta-G solvation = -4102.317365 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.56340 -39.54853 -38.18734 -37.07542 -36.08316 -34.76764 -33.94013 -33.66057 -31.68374 -30.92679 -30.11810 -27.76154 -25.94704 -25.17099 -23.79777 -23.39917 -22.10038 -21.46682 -19.78631 -19.36738 -18.57223 -18.28187 -17.77017 -16.64945 -16.25835 -15.92341 -15.72082 -15.33936 -15.03053 -14.97249 -14.91888 -14.56083 -14.31893 -14.02344 -13.94383 -13.65367 -13.58451 -13.37717 -13.19262 -13.09032 -12.86026 -12.53772 -12.42275 -12.24207 -12.14898 -12.08488 -11.89611 -11.77926 -11.45385 -11.21247 -11.14614 -10.78193 -10.71678 -10.59285 -10.37991 -9.97713 -9.56031 -9.53749 -8.64574 -8.50551 -8.18199 -7.95238 -6.31144 -3.82491 1.99392 1.99710 2.36028 2.77561 3.02565 3.06702 3.15112 3.26632 3.71784 3.75421 3.92315 4.10315 4.10498 4.18794 4.36570 4.47175 4.67871 4.74328 4.84058 4.86052 4.98633 5.05307 5.12245 5.21052 5.26503 5.33924 5.36409 5.45752 5.50247 5.55646 5.59838 5.69137 5.76470 5.78770 5.84381 5.90087 5.93244 6.15005 6.34504 6.76566 6.81501 6.86924 7.11762 7.18064 7.31487 7.58677 7.62203 8.14668 8.60257 8.95306 9.42595 9.83464 10.81944 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023026 B = 0.001738 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.745763 B =16105.209001 C =16904.832154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.010 4.010 3 H 0.142 0.858 4 C 0.219 3.781 5 N -0.409 5.409 6 C 0.522 3.478 7 O -0.522 6.522 8 N -0.722 5.722 9 C 0.119 3.881 10 C 0.046 3.954 11 N -0.538 5.538 12 C 0.057 3.943 13 C 0.054 3.946 14 N -0.518 5.518 15 C 0.044 3.956 16 C 0.453 3.547 17 O -0.560 6.560 18 N -0.591 5.591 19 C -0.304 4.304 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.056 3.944 28 C 0.063 3.937 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.403 0.597 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.042 0.958 37 H 0.048 0.952 38 H 0.080 0.920 39 H 0.033 0.967 40 H 0.108 0.892 41 H 0.049 0.951 42 H 0.089 0.911 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.040 0.960 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.944 5.496 16.430 30.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.035 4.035 3 H 0.160 0.840 4 C -0.101 4.101 5 N -0.084 5.084 6 C 0.305 3.695 7 O -0.397 6.397 8 N -0.374 5.374 9 C -0.004 4.004 10 C -0.083 4.083 11 N -0.264 5.264 12 C -0.071 4.071 13 C -0.074 4.074 14 N -0.242 5.242 15 C -0.088 4.088 16 C 0.238 3.762 17 O -0.442 6.442 18 N -0.230 5.230 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.073 4.073 28 C -0.065 4.065 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.237 0.763 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.051 0.949 40 H 0.126 0.874 41 H 0.067 0.933 42 H 0.108 0.892 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.058 0.942 46 H 0.097 0.903 47 H 0.095 0.905 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -23.247 4.433 18.292 29.911 hybrid contribution -0.905 -0.348 -1.635 1.901 sum -24.152 4.085 16.656 29.622 Atomic orbital electron populations 1.21812 0.89487 1.04455 1.04496 1.18835 0.98824 1.00253 0.85582 0.84049 1.28056 0.93952 0.94055 0.94020 1.81218 1.07452 1.07637 1.12083 1.19953 0.80709 0.84778 0.84081 1.90834 1.36786 1.25686 1.86416 1.45767 1.53955 1.32322 1.05396 1.21411 0.99980 0.97009 0.82029 1.22175 1.00443 0.95851 0.89818 1.62090 1.06538 1.55979 1.01754 1.22268 0.86217 1.00088 0.98527 1.22344 1.01793 0.95531 0.87737 1.61753 1.03665 1.56733 1.02098 1.21866 0.96147 0.96807 0.93934 1.19648 0.87624 0.85128 0.83757 1.90518 1.69314 1.38746 1.45630 1.42217 1.11570 1.44100 1.25150 1.19423 0.83907 1.28259 1.11717 0.86279 1.25039 0.95590 0.97977 0.97553 1.69624 1.08132 1.44096 1.30291 0.86672 0.79722 0.81176 0.81816 1.19630 1.20212 1.19520 1.22173 0.88692 0.98896 0.97540 1.22116 0.98055 0.97560 0.88808 0.90129 0.89824 0.90911 0.76275 0.90753 0.90148 0.90177 0.93939 0.93400 0.90223 0.94908 0.87368 0.93266 0.89245 0.79726 0.91630 0.94228 0.90316 0.90451 0.93670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.15 9.05 37.16 0.34 0.18 16 2 C -0.01 -0.04 3.10 -94.56 -0.29 -0.33 16 3 H 0.14 0.02 8.14 -51.92 -0.42 -0.40 16 4 C 0.22 1.87 13.88 -20.76 -0.29 1.58 16 5 N -0.41 -4.91 18.54 42.15 0.78 -4.13 16 6 C 0.52 3.71 7.14 -10.98 -0.08 3.63 16 7 O -0.52 -6.68 16.03 5.55 0.09 -6.59 16 8 N -0.72 -3.35 5.45 -60.30 -0.33 -3.68 16 9 C 0.12 0.87 5.61 -4.04 -0.02 0.84 16 10 C 0.05 0.30 5.07 -3.82 -0.02 0.28 16 11 N -0.54 -5.31 4.71 -234.46 -1.10 -6.42 16 12 C 0.06 0.70 5.41 -3.77 -0.02 0.68 16 13 C 0.05 0.83 5.26 -3.77 -0.02 0.81 16 14 N -0.52 -7.96 4.45 -235.90 -1.05 -9.01 16 15 C 0.04 0.72 5.45 -4.98 -0.03 0.69 16 16 C 0.45 10.06 7.48 -10.99 -0.08 9.98 16 17 O -0.56 -14.55 13.91 5.55 0.08 -14.47 16 18 N -0.59 -13.87 5.09 -10.97 -0.06 -13.93 16 19 C -0.30 -8.52 10.16 -14.93 -0.15 -8.67 16 20 H 0.12 3.81 7.39 -52.49 -0.39 3.43 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -25.64 13.96 55.50 0.77 -24.87 16 23 Si 0.88 19.23 27.74 -169.99 -4.71 14.52 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 27 C 0.06 0.63 5.61 -3.76 -0.02 0.61 16 28 C 0.06 0.60 5.61 -3.77 -0.02 0.58 16 29 H 0.08 0.02 8.14 -51.93 -0.42 -0.41 16 30 H 0.08 -0.11 7.57 -51.93 -0.39 -0.51 16 31 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.40 0.37 7.90 -40.82 -0.32 0.05 16 33 H 0.07 0.69 6.49 -51.93 -0.34 0.35 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.38 8.03 -51.92 -0.42 -0.04 16 36 H 0.04 0.27 8.12 -51.93 -0.42 -0.16 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.92 6.34 -51.92 -0.33 0.59 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.11 2.06 5.85 -51.94 -0.30 1.76 16 41 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 42 H 0.09 1.26 8.03 -51.93 -0.42 0.84 16 43 H 0.37 7.64 5.76 -40.82 -0.24 7.40 16 44 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 47 H 0.08 0.56 8.07 -51.93 -0.42 0.14 16 48 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 394.11 15.07 5.94 5.94 Total: -1.00 -37.94 394.11 -7.77 -45.71 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -7.37 Total: 5.05 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: -0.81 Total: 11.89 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: -0.98 Total: -62.04 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: 0.17 Total: -21.07 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.71 Total: 14.52 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.94 -7.77 -45.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752362986.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.227 kcal (2) G-P(sol) polarization free energy of solvation -37.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds