Wall clock time and date at job start Tue Mar 31 2020 20:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 C 1.47202 * 109.46974 * 119.99297 * 2 1 3 5 5 N 2.60801 * 109.46928 * 119.99540 * 2 1 3 6 6 C 1.50700 * 109.47442 * 239.99535 * 2 1 3 7 7 O 1.21283 * 119.99803 * 239.99993 * 6 2 1 8 8 N 1.34777 * 119.99675 * 60.27868 * 6 2 1 9 9 C 1.46497 * 119.99525 * 179.72583 * 8 6 2 10 10 C 1.52999 * 109.46992 * 179.97438 * 9 8 6 11 11 N 1.46900 * 109.47276 * 179.97438 * 10 9 8 12 12 C 1.46956 * 111.00204 * 293.79786 * 11 10 9 13 13 C 1.53051 * 109.36804 * 176.80942 * 12 11 10 14 14 N 1.46956 * 109.36247 * 58.40379 * 13 12 11 15 15 C 1.46900 * 111.00062 * 176.81191 * 14 13 12 16 16 C 1.50697 * 109.47080 * 293.79965 * 15 14 13 17 17 O 1.21291 * 119.99651 * 0.02562 * 16 15 14 18 18 N 1.34772 * 119.99712 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99561 * 179.97438 * 18 16 15 20 20 H 1.07989 * 120.00310 * 0.02562 * 19 18 16 21 21 C 1.38954 * 119.99690 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99745 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00162 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.46900 * 89.99636 * 23 21 19 25 25 H 1.48492 * 109.47159 * 209.99887 * 23 21 19 26 26 H 1.48496 * 109.46784 * 329.99990 * 23 21 19 27 27 C 1.46968 * 110.88215 * 300.67979 * 14 13 12 28 28 C 1.46956 * 111.00062 * 170.00014 * 11 10 9 29 29 H 1.08996 * 109.47637 * 300.00483 * 1 2 3 30 30 H 1.09004 * 109.46762 * 60.00268 * 1 2 3 31 31 H 1.08995 * 109.47223 * 179.97438 * 1 2 3 32 32 H 0.97000 * 119.99894 * 359.71837 * 8 6 2 33 33 H 1.08995 * 109.47421 * 299.99467 * 9 8 6 34 34 H 1.09001 * 109.47621 * 60.00103 * 9 8 6 35 35 H 1.09009 * 109.47378 * 299.99899 * 10 9 8 36 36 H 1.08993 * 109.47209 * 59.99808 * 10 9 8 37 37 H 1.08995 * 109.48679 * 296.77986 * 12 11 10 38 38 H 1.09007 * 109.48576 * 56.84413 * 12 11 10 39 39 H 1.09004 * 109.48919 * 298.43856 * 13 12 11 40 40 H 1.08988 * 109.48933 * 178.36985 * 13 12 11 41 41 H 1.08999 * 109.46779 * 53.80101 * 15 14 13 42 42 H 1.09005 * 109.47110 * 173.79933 * 15 14 13 43 43 H 0.97001 * 120.00728 * 0.02562 * 18 16 15 44 44 H 0.97006 * 119.99799 * 180.02562 * 22 21 19 45 45 H 1.08995 * 109.48528 * 299.35405 * 27 14 13 46 46 H 1.08998 * 109.50436 * 179.29754 * 27 14 13 47 47 H 1.09001 * 109.49061 * 303.15589 * 28 11 10 48 48 H 1.08997 * 109.49053 * 63.21946 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6938 1.2020 5 7 2.3992 -1.2293 2.1296 6 6 2.0324 -0.7105 -1.2304 7 8 2.7297 -1.6966 -1.1189 8 7 1.7114 -0.2468 -2.4545 9 6 2.2048 -0.9340 -3.6505 10 6 1.6990 -0.2100 -4.8998 11 7 2.1942 -0.8987 -6.0992 12 6 3.6559 -0.7893 -6.2035 13 6 4.1390 -1.5846 -7.4187 14 7 3.4873 -1.0671 -8.6300 15 6 3.9825 -1.7558 -9.8294 16 6 5.4368 -1.4197 -10.0372 17 8 6.0048 -0.6796 -9.2621 18 7 6.1062 -1.9423 -11.0836 19 6 7.4292 -1.6360 -11.2729 20 1 7.9348 -0.9765 -10.5834 21 6 8.1196 -2.1752 -12.3516 22 7 9.3877 -1.8821 -12.5327 23 14 7.2451 -3.3167 -13.5440 24 1 6.6470 -2.5188 -14.6444 25 1 8.2199 -4.2847 -14.1077 26 1 6.1733 -4.0537 -12.8278 27 6 2.0254 -1.1764 -8.5258 28 6 1.5425 -0.3812 -7.3105 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.1537 0.5418 -2.5435 33 1 3.2948 -0.9335 -3.6463 34 1 1.8419 -1.9618 -3.6548 35 1 0.6089 -0.2108 -4.9040 36 1 2.0614 0.8179 -4.8959 37 1 3.9348 0.2579 -6.3199 38 1 4.1160 -1.1903 -5.3003 39 1 3.8840 -2.6365 -7.2897 40 1 5.2197 -1.4811 -7.5148 41 1 3.8732 -2.8327 -9.7011 42 1 3.4074 -1.4330 -10.6972 43 1 5.6520 -2.5344 -11.7033 44 1 9.8696 -2.2582 -13.2860 45 1 1.7465 -2.2236 -8.4094 46 1 1.5652 -0.7757 -9.4289 47 1 0.4617 -0.4846 -7.2144 48 1 1.7974 0.6706 -7.4395 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752362986.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:47 Heat of formation + Delta-G solvation = -53.574718 kcal Electronic energy + Delta-G solvation = -28301.973798 eV Core-core repulsion = 24198.178162 eV Total energy + Delta-G solvation = -4103.795636 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.17338 -40.76357 -39.63052 -37.79481 -37.02049 -35.97470 -35.41749 -34.19880 -33.73715 -31.85654 -31.04571 -28.88141 -26.86042 -26.03885 -24.98019 -24.53273 -22.83012 -22.05829 -21.27070 -20.74170 -20.19057 -19.11597 -18.25082 -17.77940 -17.27585 -16.85760 -16.82291 -16.51097 -16.26082 -15.89923 -15.70453 -15.63556 -15.38303 -15.11216 -14.94114 -14.81754 -14.66267 -14.44832 -14.12847 -14.07344 -13.82981 -13.73538 -13.25843 -13.19710 -12.97120 -12.80925 -12.79658 -12.63892 -12.40873 -12.40137 -12.25259 -12.17510 -11.99223 -11.82524 -11.64569 -11.43784 -10.99964 -10.33631 -10.21870 -10.14329 -9.37891 -9.15495 -8.40253 -6.00781 1.30819 1.36207 1.39376 1.45021 1.47326 1.71772 1.97790 2.21724 2.23841 2.64985 2.78935 3.04346 3.15320 3.24988 3.72406 3.85591 3.94120 3.96905 4.09755 4.14141 4.21001 4.24636 4.31143 4.42404 4.44181 4.51103 4.56878 4.64316 4.68225 4.86981 4.88573 4.89617 4.96573 4.98708 4.99759 5.12551 5.16077 5.31373 5.35158 5.54233 5.87701 5.95783 5.99511 6.17531 6.26641 6.38837 6.55298 6.61481 6.90126 7.17796 7.41765 7.99385 8.77429 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023026 B = 0.001738 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.745763 B =16105.209001 C =16904.832154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.001 4.001 3 H 0.189 0.811 4 C 0.240 3.760 5 N -0.482 5.482 6 C 0.520 3.480 7 O -0.589 6.589 8 N -0.698 5.698 9 C 0.124 3.876 10 C 0.053 3.947 11 N -0.543 5.543 12 C 0.068 3.932 13 C 0.057 3.943 14 N -0.538 5.538 15 C 0.055 3.945 16 C 0.451 3.549 17 O -0.606 6.606 18 N -0.593 5.593 19 C -0.326 4.326 20 H 0.055 0.945 21 C -0.016 4.016 22 N -0.936 5.936 23 Si 0.965 3.035 24 H -0.256 1.256 25 H -0.277 1.277 26 H -0.232 1.232 27 C 0.054 3.946 28 C 0.064 3.936 29 H 0.095 0.905 30 H 0.119 0.881 31 H 0.055 0.945 32 H 0.426 0.574 33 H 0.048 0.952 34 H 0.064 0.936 35 H 0.113 0.887 36 H 0.052 0.948 37 H 0.031 0.969 38 H 0.080 0.920 39 H 0.035 0.965 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.124 0.876 43 H 0.389 0.611 44 H 0.278 0.722 45 H 0.047 0.953 46 H 0.099 0.901 47 H 0.113 0.887 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.148 5.740 15.152 34.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 H 0.206 0.794 4 C -0.079 4.079 5 N -0.157 5.157 6 C 0.305 3.695 7 O -0.468 6.468 8 N -0.352 5.352 9 C 0.000 4.000 10 C -0.075 4.075 11 N -0.268 5.268 12 C -0.060 4.060 13 C -0.071 4.071 14 N -0.263 5.263 15 C -0.076 4.076 16 C 0.239 3.761 17 O -0.490 6.490 18 N -0.235 5.235 19 C -0.456 4.456 20 H 0.073 0.927 21 C -0.214 4.214 22 N -0.576 5.576 23 Si 0.785 3.215 24 H -0.180 1.180 25 H -0.202 1.202 26 H -0.156 1.156 27 C -0.074 4.074 28 C -0.064 4.064 29 H 0.114 0.886 30 H 0.137 0.863 31 H 0.074 0.926 32 H 0.265 0.735 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.131 0.869 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.098 0.902 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.142 0.858 43 H 0.224 0.776 44 H 0.088 0.912 45 H 0.065 0.935 46 H 0.117 0.883 47 H 0.131 0.869 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -28.533 4.728 17.019 33.558 hybrid contribution 0.733 -0.305 -1.159 1.404 sum -27.800 4.424 15.860 32.310 Atomic orbital electron populations 1.21916 0.86752 1.04214 1.07016 1.19205 1.00647 1.01114 0.81540 0.79381 1.29035 0.92119 0.92621 0.94091 1.81221 1.09903 1.09905 1.14720 1.20534 0.79574 0.83940 0.85422 1.90822 1.39909 1.28758 1.87354 1.45518 1.53246 1.32484 1.03958 1.21194 0.98514 0.96806 0.83495 1.22215 1.02128 0.95557 0.87617 1.62066 1.04460 1.56972 1.03323 1.22025 0.88548 0.98357 0.97087 1.22146 0.99240 0.96271 0.89472 1.61725 1.06343 1.56952 1.01329 1.21807 0.91494 0.98373 0.95898 1.20933 0.90031 0.83142 0.82024 1.90511 1.71120 1.40402 1.46918 1.42045 1.09995 1.45100 1.26333 1.18992 0.86242 1.28706 1.11635 0.92730 1.26114 0.96269 0.99648 0.99407 1.69811 1.10503 1.45814 1.31517 0.85358 0.79133 0.78352 0.78634 1.17987 1.20199 1.15556 1.22347 0.85593 0.99908 0.99518 1.22203 0.99811 0.96651 0.87690 0.88630 0.86291 0.92572 0.73500 0.93390 0.91766 0.86864 0.92998 0.95110 0.90220 0.94688 0.92173 0.90907 0.85837 0.77553 0.91217 0.93513 0.88316 0.86851 0.94389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.22 9.05 71.98 0.65 0.87 16 2 C 0.00 -0.01 3.10 -13.35 -0.04 -0.05 16 3 H 0.19 -0.79 8.14 -2.38 -0.02 -0.81 16 4 C 0.24 4.02 13.88 89.44 1.24 5.26 16 5 N -0.48 -12.07 18.54 20.01 0.37 -11.70 16 6 C 0.52 6.66 7.14 87.66 0.63 7.28 16 7 O -0.59 -15.51 16.03 -3.04 -0.05 -15.56 16 8 N -0.70 -4.62 5.45 -463.07 -2.52 -7.15 16 9 C 0.12 1.63 5.61 86.38 0.48 2.11 16 10 C 0.05 0.52 5.07 86.30 0.44 0.95 16 11 N -0.54 -9.39 4.71 -895.71 -4.22 -13.61 16 12 C 0.07 1.69 5.41 86.31 0.47 2.16 16 13 C 0.06 1.79 5.26 86.31 0.45 2.24 16 14 N -0.54 -15.76 4.45 -900.26 -4.00 -19.77 16 15 C 0.06 1.69 5.45 85.56 0.47 2.16 16 16 C 0.45 20.32 7.48 87.66 0.66 20.98 16 17 O -0.61 -33.32 13.91 -3.06 -0.04 -33.36 16 18 N -0.59 -27.96 5.09 -306.99 -1.56 -29.52 16 19 C -0.33 -19.20 10.16 84.04 0.85 -18.34 16 20 H 0.05 3.83 7.39 -2.92 -0.02 3.81 16 21 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 22 N -0.94 -56.74 13.96 21.66 0.30 -56.44 16 23 Si 0.97 38.85 27.74 68.60 1.90 40.75 16 24 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 25 H -0.28 -11.12 7.11 99.48 0.71 -10.42 16 26 H -0.23 -7.87 6.52 99.48 0.65 -7.22 16 27 C 0.05 1.03 5.61 86.31 0.48 1.51 16 28 C 0.06 0.97 5.61 86.31 0.48 1.46 16 29 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 30 H 0.12 -0.98 7.57 -2.38 -0.02 -1.00 16 31 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.43 -1.18 7.90 -92.71 -0.73 -1.91 16 33 H 0.05 0.90 6.49 -2.39 -0.02 0.89 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.11 0.45 8.03 -2.38 -0.02 0.43 16 36 H 0.05 0.46 8.12 -2.39 -0.02 0.45 16 37 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.08 1.93 6.34 -2.38 -0.02 1.92 16 39 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.06 2.46 5.85 -2.39 -0.01 2.45 16 41 H 0.07 1.93 8.12 -2.39 -0.02 1.91 16 42 H 0.12 2.97 8.03 -2.38 -0.02 2.95 16 43 H 0.39 15.16 5.76 -92.71 -0.53 14.62 16 44 H 0.28 15.43 8.31 -92.70 -0.77 14.66 16 45 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.10 1.51 8.07 -2.39 -0.02 1.49 16 47 H 0.11 0.98 8.07 -2.39 -0.02 0.96 16 48 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -95.39 394.11 -2.42 -97.81 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -0.33 Total: 20.37 kcal Atomic # 6 Polarization: 20.43 SS G_CDS: 7.73 Total: 28.17 kcal Atomic # 7 Polarization: -126.54 SS G_CDS: -11.64 Total: -138.18 kcal Atomic # 8 Polarization: -48.83 SS G_CDS: -0.09 Total: -48.92 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 1.90 Total: 40.75 kcal Total: -95.39 -2.42 -97.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752362986.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.236 kcal (2) G-P(sol) polarization free energy of solvation -95.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds