Wall clock time and date at job start Tue Mar 31 2020 20:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47198 * 2 1 4 4 C 1.53000 * 109.47254 * 239.99513 * 2 1 3 5 5 N 1.46900 * 109.47175 * 185.00178 * 4 2 1 6 6 C 1.46890 * 110.99953 * 179.97438 * 5 4 2 7 7 C 1.50704 * 109.47138 * 179.97438 * 6 5 4 8 8 O 1.21288 * 119.99719 * 0.02562 * 7 6 5 9 9 N 1.34784 * 120.00058 * 179.97438 * 7 6 5 10 10 C 1.37091 * 119.99752 * 180.02562 * 9 7 6 11 11 H 1.08002 * 120.00251 * 359.97438 * 10 9 7 12 12 C 1.38949 * 119.99637 * 180.02562 * 10 9 7 13 13 N 1.31408 * 120.00422 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99929 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47029 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46894 * 119.99729 * 14 12 10 17 17 H 1.48499 * 109.47170 * 239.99777 * 14 12 10 18 18 N 1.46503 * 109.46949 * 119.99398 * 2 1 3 19 19 C 1.46505 * 119.99952 * 60.00079 * 18 2 1 20 20 C 1.34769 * 120.00207 * 240.00224 * 18 2 1 21 21 O 1.21280 * 120.00091 * 359.97438 * 20 18 2 22 22 C 1.50698 * 120.00252 * 180.02562 * 20 18 2 23 23 C 1.50697 * 109.47436 * 180.02562 * 22 20 18 24 24 C 1.34669 * 126.59585 * 85.16051 * 23 22 20 25 25 N 1.34133 * 108.02235 * 180.28483 * 24 23 22 26 26 C 1.30502 * 109.25197 * 359.73051 * 25 24 23 27 27 N 1.35041 * 108.70384 * 0.02562 * 26 25 24 28 28 C 1.46499 * 126.39764 * 180.02562 * 27 26 25 29 29 H 1.08996 * 109.46633 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47107 * 300.00444 * 1 2 3 31 31 H 1.09000 * 109.46610 * 60.00470 * 1 2 3 32 32 H 1.09000 * 109.46915 * 305.00165 * 4 2 1 33 33 H 1.08998 * 109.46862 * 65.00230 * 4 2 1 34 34 H 1.00896 * 110.99748 * 303.95656 * 5 4 2 35 35 H 1.09001 * 109.47687 * 299.99921 * 6 5 4 36 36 H 1.09003 * 109.47515 * 60.00288 * 6 5 4 37 37 H 0.96996 * 119.99649 * 0.02562 * 9 7 6 38 38 H 0.97002 * 120.00265 * 179.97438 * 13 12 10 39 39 H 1.09000 * 109.47396 * 270.00239 * 19 18 2 40 40 H 1.09002 * 109.46631 * 29.99955 * 19 18 2 41 41 H 1.09000 * 109.47025 * 149.99736 * 19 18 2 42 42 H 1.08994 * 109.47477 * 59.99406 * 22 20 18 43 43 H 1.09007 * 109.47124 * 299.99518 * 22 20 18 44 44 H 1.07993 * 125.98713 * 0.05405 * 24 23 22 45 45 H 1.07998 * 125.64430 * 179.97438 * 26 25 24 46 46 H 1.09002 * 109.47391 * 90.01916 * 28 27 26 47 47 H 1.09001 * 109.46813 * 330.01972 * 28 27 26 48 48 H 1.09004 * 109.47041 * 210.02099 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5041 -0.8268 -1.1903 6 6 4.0304 -1.5161 -2.3759 7 6 5.5318 -1.6046 -2.2804 8 8 6.1067 -1.1396 -1.3190 9 7 6.2355 -2.2013 -3.2629 10 6 7.6013 -2.2822 -3.1758 11 1 8.1133 -1.8674 -2.3201 12 6 8.3268 -2.8970 -4.1889 13 7 7.7038 -3.4012 -5.2303 14 14 10.1879 -3.0066 -4.0706 15 1 10.6421 -2.3685 -2.8090 16 1 10.6012 -4.4329 -4.0800 17 1 10.7996 -2.3063 -5.2284 18 7 2.0184 -0.6905 1.1963 19 6 1.6644 -2.0931 1.4282 20 6 2.7931 -0.0355 2.0834 21 8 3.0865 1.1255 1.8912 22 6 3.2959 -0.7459 3.3136 23 6 4.1325 0.2015 4.1343 24 6 3.6839 1.0824 5.0488 25 7 4.7425 1.7376 5.5481 26 6 5.8305 1.2921 4.9818 27 7 5.4947 0.3303 4.0953 28 6 6.4158 -0.4298 3.2468 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.6055 -1.7199 -1.2950 33 1 1.7518 -0.1584 -2.1369 34 1 3.9280 0.0824 -1.0823 35 1 3.6096 -2.5202 -2.4292 36 1 3.7559 -0.9591 -3.2718 37 1 5.7756 -2.5735 -4.0316 38 1 8.2104 -3.8300 -5.9377 39 1 0.7375 -2.1443 1.9995 40 1 1.5295 -2.5968 0.4710 41 1 2.4629 -2.5817 1.9866 42 1 3.9016 -1.6021 3.0168 43 1 2.4483 -1.0888 3.9071 44 1 2.6523 1.2371 5.3283 45 1 6.8333 1.6362 5.1874 46 1 6.7357 -1.3294 3.7726 47 1 7.2860 0.1840 3.0143 48 1 5.9110 -0.7096 2.3221 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753720725.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:36 Heat of formation + Delta-G solvation = -1.542710 kcal Electronic energy + Delta-G solvation = -29790.745869 eV Core-core repulsion = 25689.206511 eV Total energy + Delta-G solvation = -4101.539358 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.04465 -39.93396 -38.32307 -36.82255 -34.70746 -33.97141 -33.83617 -32.62936 -31.31993 -31.11240 -27.62866 -27.19245 -26.90467 -26.79660 -25.03463 -23.30092 -21.91266 -21.36593 -20.05349 -19.31556 -18.89160 -17.92810 -17.41536 -16.95450 -16.48971 -15.91712 -15.76655 -15.38583 -15.10108 -14.65648 -14.53495 -14.29354 -14.06185 -13.85205 -13.58549 -13.48232 -13.32014 -13.07092 -13.01166 -12.78551 -12.65681 -12.58945 -12.37861 -12.25613 -12.13622 -11.93390 -11.72417 -11.55099 -11.46184 -11.10576 -10.92680 -10.39659 -10.28169 -9.91339 -9.78638 -9.57318 -9.45306 -8.66186 -8.47256 -8.28423 -8.09886 -8.01023 -6.47161 -3.88095 2.02377 2.71591 2.83784 3.03000 3.11619 3.22512 3.28918 3.29494 3.85583 4.03185 4.25545 4.50488 4.63398 4.77161 4.81610 4.86780 4.94826 4.97839 5.05605 5.08413 5.17902 5.19444 5.23380 5.24300 5.36611 5.42119 5.43208 5.48519 5.51748 5.61311 5.70393 5.74865 5.81268 5.86995 5.91785 5.98838 6.20775 6.40561 6.52277 6.78401 7.17051 7.23839 7.40485 7.49684 7.60475 8.00849 8.13245 8.26812 8.55749 9.12503 9.48935 10.00180 10.70636 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010079 B = 0.003155 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.315184 B = 8872.783926 C =11175.890548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.138 3.862 3 H 0.099 0.901 4 C 0.047 3.953 5 N -0.663 5.663 6 C 0.051 3.949 7 C 0.442 3.558 8 O -0.583 6.583 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.281 1.281 18 N -0.594 5.594 19 C 0.082 3.918 20 C 0.523 3.477 21 O -0.531 6.531 22 C -0.063 4.063 23 C -0.004 4.004 24 C -0.016 4.016 25 N -0.498 5.498 26 C 0.180 3.820 27 N -0.448 5.448 28 C 0.068 3.932 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.037 0.963 34 H 0.350 0.650 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.051 0.949 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.101 0.899 43 H 0.111 0.889 44 H 0.163 0.837 45 H 0.203 0.797 46 H 0.076 0.924 47 H 0.090 0.910 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.879 0.623 12.419 18.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.035 3.965 3 H 0.117 0.883 4 C -0.084 4.084 5 N -0.295 5.295 6 C -0.082 4.082 7 C 0.227 3.773 8 O -0.468 6.468 9 N -0.201 5.201 10 C -0.428 4.428 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.207 1.207 18 N -0.327 5.327 19 C -0.061 4.061 20 C 0.310 3.690 21 O -0.406 6.406 22 C -0.104 4.104 23 C -0.120 4.120 24 C -0.164 4.164 25 N -0.216 5.216 26 C -0.102 4.102 27 N -0.130 5.130 28 C -0.074 4.074 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.055 0.945 34 H 0.170 0.830 35 H 0.102 0.898 36 H 0.059 0.941 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.120 0.880 43 H 0.129 0.871 44 H 0.181 0.819 45 H 0.219 0.781 46 H 0.095 0.905 47 H 0.108 0.892 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.160 1.421 13.682 19.037 hybrid contribution 0.657 -0.536 -2.108 2.273 sum -12.502 0.885 11.574 17.060 Atomic orbital electron populations 1.22078 0.94614 1.02376 1.02525 1.21067 0.93515 0.98009 0.83959 0.88305 1.22360 0.89646 1.00478 0.95891 1.60023 1.03094 1.26842 1.39565 1.21669 0.95276 0.99736 0.91501 1.19797 0.88003 0.84466 0.85016 1.90505 1.71139 1.51844 1.33275 1.41875 1.07417 1.50913 1.19867 1.19728 0.81501 1.35061 1.06554 0.87938 1.25260 1.00680 0.96770 0.95220 1.69615 1.36631 1.38605 1.09427 0.85814 0.82246 0.77928 0.78436 1.19249 1.20717 1.20725 1.47517 1.50944 1.12145 1.22140 1.21707 1.00136 0.81799 1.02469 1.20327 0.77801 0.86940 0.83945 1.90718 1.56620 1.17019 1.76272 1.20034 0.99441 0.96980 0.93902 1.20424 0.83229 1.04717 1.03634 1.21886 0.98280 0.97085 0.99175 1.70238 0.97882 1.26302 1.27158 1.24840 1.00043 0.92122 0.93198 1.45256 1.06511 1.29999 1.31277 1.22133 0.93715 0.96419 0.95173 0.92165 0.92063 0.91447 0.90824 0.94468 0.83035 0.89803 0.94053 0.77502 0.91895 0.93025 0.90768 0.91139 0.88037 0.87069 0.81929 0.78064 0.90515 0.89155 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.20 37.16 0.34 -0.91 16 2 C 0.14 1.50 2.88 -67.92 -0.20 1.31 16 3 H 0.10 1.32 6.90 -51.93 -0.36 0.97 16 4 C 0.05 0.53 4.93 -3.82 -0.02 0.51 16 5 N -0.66 -10.27 5.85 -115.06 -0.67 -10.95 16 6 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 7 C 0.44 10.10 7.82 -10.98 -0.09 10.01 16 8 O -0.58 -15.29 15.78 5.55 0.09 -15.20 16 9 N -0.56 -13.95 5.29 -10.96 -0.06 -14.00 16 10 C -0.30 -8.16 9.68 -14.94 -0.14 -8.31 16 11 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.14 13.05 55.50 0.72 -23.41 16 14 Si 0.93 20.66 29.55 -169.99 -5.02 15.63 16 15 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 18 N -0.59 -6.50 2.49 -173.93 -0.43 -6.93 16 19 C 0.08 0.64 9.30 59.85 0.56 1.20 16 20 C 0.52 6.98 7.67 -10.99 -0.08 6.90 16 21 O -0.53 -9.40 15.36 5.56 0.09 -9.32 16 22 C -0.06 -0.67 4.43 -29.04 -0.13 -0.80 16 23 C 0.00 -0.06 5.45 -81.60 -0.44 -0.50 16 24 C -0.02 -0.22 11.79 -17.81 -0.21 -0.43 16 25 N -0.50 -7.60 11.25 -14.67 -0.17 -7.77 16 26 C 0.18 2.35 12.56 -90.37 -1.14 1.22 16 27 N -0.45 -5.84 3.15 -121.36 -0.38 -6.22 16 28 C 0.07 0.76 10.83 59.85 0.65 1.41 16 29 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.75 6.88 -51.93 -0.36 0.39 16 33 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.35 6.22 8.43 -39.29 -0.33 5.89 16 35 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 38 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 39 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.58 6.53 -51.93 -0.34 0.24 16 41 H 0.07 0.51 6.44 -51.93 -0.33 0.18 16 42 H 0.10 0.99 6.89 -51.93 -0.36 0.63 16 43 H 0.11 0.84 8.11 -51.93 -0.42 0.42 16 44 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 45 H 0.20 1.88 8.06 -52.49 -0.42 1.45 16 46 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.09 1.27 7.67 -51.93 -0.40 0.87 16 LS Contribution 401.42 15.07 6.05 6.05 Total: -1.00 -35.62 401.42 -8.17 -43.80 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -7.36 Total: 15.39 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: -1.03 Total: 12.93 kcal Atomic # 7 Polarization: -68.30 SS G_CDS: -0.99 Total: -69.28 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: 0.17 Total: -24.52 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.62 -8.17 -43.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753720725.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.254 kcal (2) G-P(sol) polarization free energy of solvation -35.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds