Wall clock time and date at job start Tue Mar 31 2020 20:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47198 * 2 1 4 4 C 1.53000 * 109.47254 * 239.99513 * 2 1 3 5 5 N 1.46900 * 109.47175 * 185.00178 * 4 2 1 6 6 C 1.46890 * 110.99953 * 179.97438 * 5 4 2 7 7 C 1.50704 * 109.47138 * 179.97438 * 6 5 4 8 8 O 1.21288 * 119.99719 * 0.02562 * 7 6 5 9 9 N 1.34784 * 120.00058 * 179.97438 * 7 6 5 10 10 C 1.37091 * 119.99752 * 180.02562 * 9 7 6 11 11 H 1.08002 * 120.00251 * 359.97438 * 10 9 7 12 12 C 1.38949 * 119.99637 * 180.02562 * 10 9 7 13 13 N 1.31408 * 120.00422 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99929 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47029 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46894 * 119.99729 * 14 12 10 17 17 H 1.48499 * 109.47170 * 239.99777 * 14 12 10 18 18 N 1.46503 * 109.46949 * 119.99398 * 2 1 3 19 19 C 1.46505 * 119.99952 * 60.00079 * 18 2 1 20 20 C 1.34769 * 120.00207 * 240.00224 * 18 2 1 21 21 O 1.21280 * 120.00091 * 359.97438 * 20 18 2 22 22 C 1.50698 * 120.00252 * 180.02562 * 20 18 2 23 23 C 1.50697 * 109.47436 * 180.02562 * 22 20 18 24 24 C 1.34669 * 126.59585 * 85.16051 * 23 22 20 25 25 N 1.34133 * 108.02235 * 180.28483 * 24 23 22 26 26 C 1.30502 * 109.25197 * 359.73051 * 25 24 23 27 27 N 1.35041 * 108.70384 * 0.02562 * 26 25 24 28 28 C 1.46499 * 126.39764 * 180.02562 * 27 26 25 29 29 H 1.08996 * 109.46633 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47107 * 300.00444 * 1 2 3 31 31 H 1.09000 * 109.46610 * 60.00470 * 1 2 3 32 32 H 1.09000 * 109.46915 * 305.00165 * 4 2 1 33 33 H 1.08998 * 109.46862 * 65.00230 * 4 2 1 34 34 H 1.00896 * 110.99748 * 303.95656 * 5 4 2 35 35 H 1.09001 * 109.47687 * 299.99921 * 6 5 4 36 36 H 1.09003 * 109.47515 * 60.00288 * 6 5 4 37 37 H 0.96996 * 119.99649 * 0.02562 * 9 7 6 38 38 H 0.97002 * 120.00265 * 179.97438 * 13 12 10 39 39 H 1.09000 * 109.47396 * 270.00239 * 19 18 2 40 40 H 1.09002 * 109.46631 * 29.99955 * 19 18 2 41 41 H 1.09000 * 109.47025 * 149.99736 * 19 18 2 42 42 H 1.08994 * 109.47477 * 59.99406 * 22 20 18 43 43 H 1.09007 * 109.47124 * 299.99518 * 22 20 18 44 44 H 1.07993 * 125.98713 * 0.05405 * 24 23 22 45 45 H 1.07998 * 125.64430 * 179.97438 * 26 25 24 46 46 H 1.09002 * 109.47391 * 90.01916 * 28 27 26 47 47 H 1.09001 * 109.46813 * 330.01972 * 28 27 26 48 48 H 1.09004 * 109.47041 * 210.02099 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5041 -0.8268 -1.1903 6 6 4.0304 -1.5161 -2.3759 7 6 5.5318 -1.6046 -2.2804 8 8 6.1067 -1.1396 -1.3190 9 7 6.2355 -2.2013 -3.2629 10 6 7.6013 -2.2822 -3.1758 11 1 8.1133 -1.8674 -2.3201 12 6 8.3268 -2.8970 -4.1889 13 7 7.7038 -3.4012 -5.2303 14 14 10.1879 -3.0066 -4.0706 15 1 10.6421 -2.3685 -2.8090 16 1 10.6012 -4.4329 -4.0800 17 1 10.7996 -2.3063 -5.2284 18 7 2.0184 -0.6905 1.1963 19 6 1.6644 -2.0931 1.4282 20 6 2.7931 -0.0355 2.0834 21 8 3.0865 1.1255 1.8912 22 6 3.2959 -0.7459 3.3136 23 6 4.1325 0.2015 4.1343 24 6 3.6839 1.0824 5.0488 25 7 4.7425 1.7376 5.5481 26 6 5.8305 1.2921 4.9818 27 7 5.4947 0.3303 4.0953 28 6 6.4158 -0.4298 3.2468 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.6055 -1.7199 -1.2950 33 1 1.7518 -0.1584 -2.1369 34 1 3.9280 0.0824 -1.0823 35 1 3.6096 -2.5202 -2.4292 36 1 3.7559 -0.9591 -3.2718 37 1 5.7756 -2.5735 -4.0316 38 1 8.2104 -3.8300 -5.9377 39 1 0.7375 -2.1443 1.9995 40 1 1.5295 -2.5968 0.4710 41 1 2.4629 -2.5817 1.9866 42 1 3.9016 -1.6021 3.0168 43 1 2.4483 -1.0888 3.9071 44 1 2.6523 1.2371 5.3283 45 1 6.8333 1.6362 5.1874 46 1 6.7357 -1.3294 3.7726 47 1 7.2860 0.1840 3.0143 48 1 5.9110 -0.7096 2.3221 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753720725.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:35 Heat of formation + Delta-G solvation = -27.018877 kcal Electronic energy + Delta-G solvation = -29791.850599 eV Core-core repulsion = 25689.206511 eV Total energy + Delta-G solvation = -4102.644088 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.03726 -40.90448 -40.10511 -37.91308 -36.14878 -35.52311 -34.95497 -33.61898 -33.24188 -32.05892 -28.96312 -28.10964 -27.79824 -27.60115 -26.67340 -24.60738 -22.86301 -22.36511 -21.21027 -20.84713 -19.97677 -19.77674 -18.36384 -17.97557 -17.82155 -17.20700 -16.75015 -16.61843 -16.37808 -16.19847 -15.96666 -15.39203 -15.22891 -15.09101 -15.02472 -14.53535 -14.30370 -14.10047 -13.93206 -13.90980 -13.70866 -13.53469 -13.46304 -13.27745 -13.13048 -13.06241 -12.94092 -12.81673 -12.75109 -12.48609 -12.39614 -12.12738 -11.76739 -11.52092 -10.96704 -10.84609 -10.46741 -10.35430 -10.01999 -9.49548 -9.33449 -9.27829 -8.47810 -5.96167 1.03723 1.35339 1.41015 1.54466 1.74023 1.91665 2.04977 2.11251 2.27417 2.31903 2.91200 3.19822 3.50599 3.58537 3.74571 3.87874 3.91941 3.98875 4.11703 4.18072 4.32359 4.34740 4.36826 4.37572 4.42725 4.50710 4.54460 4.57050 4.65355 4.69405 4.75034 4.81053 4.82851 4.85942 5.06657 5.13789 5.29455 5.40078 5.42306 5.68981 5.79475 5.88228 6.10087 6.27781 6.28004 6.52293 6.59549 7.11295 7.12150 7.31473 7.55929 8.11167 8.69821 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010079 B = 0.003155 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.315184 B = 8872.783926 C =11175.890548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.137 3.863 3 H 0.065 0.935 4 C 0.050 3.950 5 N -0.672 5.672 6 C 0.066 3.934 7 C 0.439 3.561 8 O -0.621 6.621 9 N -0.574 5.574 10 C -0.331 4.331 11 H 0.078 0.922 12 C -0.012 4.012 13 N -0.921 5.921 14 Si 0.990 3.010 15 H -0.273 1.273 16 H -0.270 1.270 17 H -0.273 1.273 18 N -0.590 5.590 19 C 0.074 3.926 20 C 0.515 3.485 21 O -0.586 6.586 22 C -0.056 4.056 23 C -0.012 4.012 24 C -0.038 4.038 25 N -0.531 5.531 26 C 0.174 3.826 27 N -0.455 5.455 28 C 0.071 3.929 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.049 0.951 34 H 0.333 0.667 35 H 0.109 0.891 36 H 0.060 0.940 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.111 0.889 43 H 0.146 0.854 44 H 0.175 0.825 45 H 0.233 0.767 46 H 0.101 0.899 47 H 0.098 0.902 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.014 -1.118 12.139 19.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.033 3.967 3 H 0.084 0.916 4 C -0.079 4.079 5 N -0.303 5.303 6 C -0.066 4.066 7 C 0.226 3.774 8 O -0.507 6.507 9 N -0.211 5.211 10 C -0.460 4.460 11 H 0.096 0.904 12 C -0.212 4.212 13 N -0.562 5.562 14 Si 0.814 3.186 15 H -0.198 1.198 16 H -0.195 1.195 17 H -0.198 1.198 18 N -0.322 5.322 19 C -0.068 4.068 20 C 0.303 3.697 21 O -0.467 6.467 22 C -0.096 4.096 23 C -0.128 4.128 24 C -0.185 4.185 25 N -0.250 5.250 26 C -0.108 4.108 27 N -0.137 5.137 28 C -0.070 4.070 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.067 0.933 34 H 0.150 0.850 35 H 0.127 0.873 36 H 0.078 0.922 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.129 0.871 43 H 0.163 0.837 44 H 0.192 0.808 45 H 0.249 0.751 46 H 0.120 0.880 47 H 0.116 0.884 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.354 -0.378 13.374 19.623 hybrid contribution 0.955 0.017 -2.028 2.242 sum -13.399 -0.361 11.347 17.562 Atomic orbital electron populations 1.21995 0.91835 1.03793 1.02877 1.21073 0.95482 0.96267 0.83857 0.91628 1.22471 0.86877 1.02007 0.96559 1.60055 1.05484 1.25767 1.38990 1.21540 0.90595 1.01626 0.92872 1.20873 0.90530 0.82384 0.83588 1.90483 1.72758 1.52893 1.34607 1.41937 1.06847 1.51730 1.20600 1.19670 0.83051 1.36681 1.06643 0.90377 1.26004 1.04749 0.95890 0.94566 1.69670 1.38168 1.38599 1.09737 0.84907 0.77086 0.78339 0.78244 1.19754 1.19505 1.19836 1.47648 1.49798 1.13312 1.21413 1.21982 1.01718 0.79681 1.03400 1.20788 0.77572 0.86464 0.84836 1.90693 1.58883 1.19453 1.77632 1.20120 1.00329 0.96200 0.92952 1.20838 0.83631 1.04913 1.03450 1.22213 0.98825 0.97588 0.99909 1.70203 0.98854 1.27434 1.28525 1.25476 1.00909 0.91690 0.92725 1.45450 1.06819 1.30089 1.31308 1.22163 0.93242 0.97455 0.94183 0.90094 0.92506 0.90394 0.88553 0.93254 0.84975 0.87293 0.92198 0.77038 0.91335 0.90140 0.90225 0.90555 0.87053 0.83654 0.80795 0.75132 0.88014 0.88378 0.91289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.20 71.98 0.66 -1.29 16 2 C 0.14 2.82 2.88 44.99 0.13 2.95 16 3 H 0.07 1.82 6.90 -2.39 -0.02 1.80 16 4 C 0.05 1.03 4.93 86.30 0.43 1.46 16 5 N -0.67 -20.21 5.85 -517.95 -3.03 -23.24 16 6 C 0.07 2.13 6.17 85.56 0.53 2.66 16 7 C 0.44 20.16 7.82 87.66 0.69 20.85 16 8 O -0.62 -33.41 15.78 -3.05 -0.05 -33.46 16 9 N -0.57 -28.62 5.29 -306.98 -1.62 -30.25 16 10 C -0.33 -18.39 9.68 84.04 0.81 -17.58 16 11 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 12 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 13 N -0.92 -48.78 13.05 21.66 0.28 -48.49 16 14 Si 0.99 42.11 29.55 68.60 2.03 44.13 16 15 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 16 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 17 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 18 N -0.59 -12.09 2.49 -822.57 -2.04 -14.14 16 19 C 0.07 0.93 9.30 127.77 1.19 2.12 16 20 C 0.51 13.72 7.67 87.66 0.67 14.39 16 21 O -0.59 -21.71 15.36 -3.03 -0.05 -21.75 16 22 C -0.06 -1.13 4.43 29.10 0.13 -1.00 16 23 C -0.01 -0.33 5.45 40.95 0.22 -0.11 16 24 C -0.04 -1.08 11.79 83.52 0.98 -0.09 16 25 N -0.53 -16.51 11.25 -200.31 -2.25 -18.76 16 26 C 0.17 4.56 12.56 180.26 2.26 6.82 16 27 N -0.45 -11.89 3.15 -537.88 -1.70 -13.58 16 28 C 0.07 1.60 10.83 127.77 1.38 2.98 16 29 H 0.08 0.77 7.67 -2.39 -0.02 0.75 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.10 1.57 6.88 -2.39 -0.02 1.56 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.33 12.06 8.43 -89.70 -0.76 11.31 16 35 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.40 18.75 7.90 -92.71 -0.73 18.02 16 38 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 39 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.08 0.95 6.53 -2.39 -0.02 0.93 16 41 H 0.08 0.90 6.44 -2.39 -0.02 0.88 16 42 H 0.11 2.04 6.89 -2.39 -0.02 2.03 16 43 H 0.15 1.87 8.11 -2.38 -0.02 1.85 16 44 H 0.17 4.25 8.06 -2.91 -0.02 4.23 16 45 H 0.23 4.16 8.06 -2.91 -0.02 4.13 16 46 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.07 1.92 7.67 -2.38 -0.02 1.90 16 Total: -1.00 -80.37 401.42 1.63 -78.74 By element: Atomic # 1 Polarization: 47.33 SS G_CDS: -0.50 Total: 46.84 kcal Atomic # 6 Polarization: 23.41 SS G_CDS: 10.56 Total: 33.97 kcal Atomic # 7 Polarization: -138.11 SS G_CDS: -10.36 Total: -148.47 kcal Atomic # 8 Polarization: -55.12 SS G_CDS: -0.09 Total: -55.21 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -80.37 1.63 -78.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753720725.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.720 kcal (2) G-P(sol) polarization free energy of solvation -80.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds