Wall clock time and date at job start Tue Mar 31 2020 20:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47415 * 2 1 4 4 C 1.53008 * 109.47254 * 120.00354 * 2 1 3 5 5 N 1.46897 * 109.47072 * 174.99966 * 4 2 1 6 6 C 1.46901 * 110.99968 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.47227 * 179.97438 * 6 5 4 8 8 O 1.21295 * 120.00130 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99895 * 179.97438 * 7 6 5 10 10 C 1.37098 * 119.99791 * 180.02562 * 9 7 6 11 11 H 1.07996 * 120.00161 * 0.02562 * 10 9 7 12 12 C 1.38952 * 119.99743 * 180.02562 * 10 9 7 13 13 N 1.31412 * 119.99848 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00366 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47438 * 89.99516 * 14 12 10 16 16 H 1.48501 * 109.47272 * 209.99888 * 14 12 10 17 17 H 1.48505 * 109.46686 * 329.99486 * 14 12 10 18 18 N 1.46503 * 109.47236 * 240.00293 * 2 1 3 19 19 C 1.46505 * 119.99952 * 299.99953 * 18 2 1 20 20 C 1.34769 * 120.00207 * 120.00098 * 18 2 1 21 21 O 1.21283 * 120.00415 * 359.97438 * 20 18 2 22 22 C 1.50698 * 120.00252 * 180.02562 * 20 18 2 23 23 C 1.50697 * 109.47436 * 180.02562 * 22 20 18 24 24 C 1.34669 * 126.59585 * 85.16051 * 23 22 20 25 25 N 1.34133 * 108.02235 * 180.28483 * 24 23 22 26 26 C 1.30502 * 109.25197 * 359.73051 * 25 24 23 27 27 N 1.35041 * 108.70384 * 0.02562 * 26 25 24 28 28 C 1.46499 * 126.39764 * 180.02562 * 27 26 25 29 29 H 1.09001 * 109.46708 * 59.99887 * 1 2 3 30 30 H 1.09002 * 109.46869 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46695 * 299.99657 * 1 2 3 32 32 H 1.08999 * 109.46591 * 294.99762 * 4 2 1 33 33 H 1.09001 * 109.46958 * 54.99745 * 4 2 1 34 34 H 1.00892 * 111.00277 * 56.04412 * 5 4 2 35 35 H 1.09002 * 109.47200 * 299.99961 * 6 5 4 36 36 H 1.09002 * 109.47112 * 59.99678 * 6 5 4 37 37 H 0.97000 * 120.00488 * 0.02562 * 9 7 6 38 38 H 0.97001 * 120.00226 * 180.02562 * 13 12 10 39 39 H 1.09000 * 109.47396 * 270.00239 * 19 18 2 40 40 H 1.09002 * 109.46631 * 29.99955 * 19 18 2 41 41 H 1.09000 * 109.47025 * 149.99736 * 19 18 2 42 42 H 1.08994 * 109.47477 * 59.99406 * 22 20 18 43 43 H 1.09007 * 109.47124 * 299.99518 * 22 20 18 44 44 H 1.07993 * 125.98713 * 0.05405 * 24 23 22 45 45 H 1.08005 * 125.64657 * 180.02562 * 26 25 24 46 46 H 1.09002 * 109.47391 * 90.01916 * 28 27 26 47 47 H 1.09001 * 109.46813 * 330.01972 * 28 27 26 48 48 H 1.09004 * 109.47041 * 210.02099 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2492 5 7 3.5041 -0.8268 1.1904 6 6 4.0303 -1.5161 2.3761 7 6 5.5316 -1.6056 2.2800 8 8 6.1067 -1.1405 1.3186 9 7 6.2354 -2.2016 3.2629 10 6 7.6012 -2.2826 3.1757 11 1 8.1132 -1.8685 2.3197 12 6 8.3267 -2.8975 4.1888 13 7 9.6359 -2.9747 4.1055 14 14 7.4411 -3.6144 5.6690 15 1 7.0917 -5.0320 5.3982 16 1 8.3266 -3.5415 6.8589 17 1 6.2008 -2.8395 5.9269 18 7 2.0184 -0.6906 -1.1962 19 6 1.6645 -2.0932 -1.4281 20 6 2.7932 -0.0356 -2.0833 21 8 3.0859 1.1257 -1.8917 22 6 3.2951 -0.7457 -3.3141 23 6 4.1329 0.2012 -4.1340 24 6 5.4445 0.4598 -3.9707 25 7 5.8081 1.3606 -4.8956 26 6 4.7730 1.6658 -5.6294 27 7 3.7077 0.9621 -5.1895 28 6 2.3495 1.0078 -5.7367 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.7517 -0.1584 2.1369 33 1 1.6054 -1.7199 1.2951 34 1 3.9280 0.0824 1.0824 35 1 3.7558 -0.9591 3.2719 36 1 3.6095 -2.5201 2.4293 37 1 5.7756 -2.5732 4.0319 38 1 10.1424 -3.4043 4.8125 39 1 2.4157 -2.7377 -0.9718 40 1 0.6904 -2.3001 -0.9847 41 1 1.6238 -2.2851 -2.5003 42 1 2.4472 -1.0880 -3.9073 43 1 3.9006 -1.6024 -3.0178 44 1 6.0894 0.0216 -3.2236 45 1 4.7690 2.3655 -6.4522 46 1 2.2481 0.2572 -6.5205 47 1 2.1590 1.9967 -6.1537 48 1 1.6309 0.8037 -4.9429 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753720726.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:39 Heat of formation + Delta-G solvation = 8.964467 kcal Electronic energy + Delta-G solvation = -29578.707444 eV Core-core repulsion = 25477.623711 eV Total energy + Delta-G solvation = -4101.083733 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.08302 -39.96551 -38.42421 -36.86148 -34.74715 -34.10713 -33.82036 -32.66838 -31.62721 -31.19387 -27.76481 -27.27125 -27.04142 -26.87081 -24.97111 -23.12967 -21.94704 -21.39591 -20.10661 -19.35955 -18.99438 -18.26194 -17.45708 -17.06562 -16.48058 -15.94075 -15.75520 -15.49350 -15.21063 -14.90519 -14.57925 -14.25259 -14.03330 -13.97786 -13.56000 -13.40801 -13.23284 -13.18510 -12.97910 -12.94126 -12.82330 -12.65714 -12.42712 -12.40850 -12.18332 -12.13792 -12.01137 -11.66357 -11.56489 -11.13895 -10.97044 -10.57749 -9.94325 -9.88812 -9.81513 -9.53870 -9.52550 -8.69682 -8.50005 -8.28567 -8.15741 -8.09919 -6.27449 -3.78765 1.96856 2.64914 2.74384 2.97887 3.03811 3.07984 3.16299 3.33087 3.78102 4.06217 4.13011 4.44559 4.47172 4.57225 4.70866 4.78507 4.81002 4.83228 4.86056 4.95913 4.99460 5.04708 5.12683 5.24667 5.27062 5.34376 5.36927 5.43511 5.48323 5.55019 5.63778 5.71414 5.79602 5.82658 5.85638 5.92849 5.96304 6.32174 6.48389 6.82710 7.11309 7.18860 7.37022 7.58742 7.62053 8.14657 8.18797 8.24203 8.63638 8.99147 9.46181 9.87069 10.85828 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012218 B = 0.002817 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.235611 B = 9937.795638 C =11754.565216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.138 3.862 3 H 0.099 0.901 4 C 0.048 3.952 5 N -0.662 5.662 6 C 0.049 3.951 7 C 0.450 3.550 8 O -0.560 6.560 9 N -0.592 5.592 10 C -0.303 4.303 11 H 0.120 0.880 12 C 0.041 3.959 13 N -0.882 5.882 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.270 1.270 18 N -0.595 5.595 19 C 0.078 3.922 20 C 0.522 3.478 21 O -0.530 6.530 22 C -0.060 4.060 23 C -0.010 4.010 24 C 0.001 3.999 25 N -0.491 5.491 26 C 0.177 3.823 27 N -0.459 5.459 28 C 0.074 3.926 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.036 0.964 33 H 0.073 0.927 34 H 0.353 0.647 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.370 0.630 38 H 0.273 0.727 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.093 0.907 43 H 0.120 0.880 44 H 0.172 0.828 45 H 0.202 0.798 46 H 0.075 0.925 47 H 0.086 0.914 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.196 2.198 -14.241 29.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.034 3.966 3 H 0.117 0.883 4 C -0.082 4.082 5 N -0.295 5.295 6 C -0.084 4.084 7 C 0.235 3.765 8 O -0.441 6.441 9 N -0.232 5.232 10 C -0.432 4.432 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.522 5.522 14 Si 0.707 3.293 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.196 1.196 18 N -0.328 5.328 19 C -0.066 4.066 20 C 0.310 3.690 21 O -0.406 6.406 22 C -0.101 4.101 23 C -0.124 4.124 24 C -0.147 4.147 25 N -0.209 5.209 26 C -0.104 4.104 27 N -0.143 5.143 28 C -0.069 4.069 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.173 0.827 35 H 0.060 0.940 36 H 0.103 0.897 37 H 0.202 0.798 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.111 0.889 43 H 0.138 0.862 44 H 0.189 0.811 45 H 0.219 0.781 46 H 0.093 0.907 47 H 0.105 0.895 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -23.783 2.834 -15.245 28.391 hybrid contribution -1.550 -0.442 2.188 2.718 sum -25.333 2.391 -13.057 28.600 Atomic orbital electron populations 1.22089 0.94766 1.02320 1.02487 1.21058 0.93336 0.98074 0.84102 0.88261 1.22352 0.89632 1.00419 0.95820 1.59999 1.03092 1.27112 1.39299 1.21698 0.95089 0.99868 0.91727 1.19714 0.87946 0.84056 0.84769 1.90593 1.70934 1.50091 1.32473 1.42208 1.07856 1.53280 1.19856 1.19439 0.79576 1.35808 1.08393 0.86269 1.25038 0.95430 0.97746 0.98006 1.69625 1.05054 1.43397 1.34132 0.86670 0.79599 0.79954 0.83121 1.19661 1.20235 1.19599 1.47515 1.50959 1.12192 1.22169 1.21767 1.01288 0.82156 1.01340 1.20335 0.77650 0.86913 0.84142 1.90720 1.56341 1.17077 1.76454 1.20029 0.99413 0.97405 0.93248 1.20410 0.95780 1.01852 0.94350 1.22154 0.93008 0.99407 1.00176 1.70297 1.28519 1.14965 1.07123 1.24861 0.82092 1.00821 1.02665 1.45168 1.10103 1.33447 1.25616 1.21961 0.81185 1.03851 0.99870 0.92213 0.92104 0.91369 0.94561 0.90877 0.82716 0.93979 0.89700 0.79793 0.91654 0.91500 0.91312 0.91593 0.88924 0.86230 0.81110 0.78114 0.90659 0.89493 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 9.17 37.16 0.34 -0.79 16 2 C 0.14 1.43 2.88 -67.92 -0.20 1.23 16 3 H 0.10 1.28 6.90 -51.93 -0.36 0.93 16 4 C 0.05 0.53 4.98 -3.82 -0.02 0.51 16 5 N -0.66 -10.21 5.85 -115.05 -0.67 -10.89 16 6 C 0.05 0.81 6.17 -4.98 -0.03 0.77 16 7 C 0.45 10.32 7.82 -10.99 -0.09 10.23 16 8 O -0.56 -15.35 15.78 5.54 0.09 -15.26 16 9 N -0.59 -14.27 5.09 -10.96 -0.06 -14.32 16 10 C -0.30 -8.72 10.16 -14.93 -0.15 -8.87 16 11 H 0.12 3.93 7.39 -52.49 -0.39 3.55 16 12 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 13 N -0.88 -26.16 13.96 55.50 0.77 -25.38 16 14 Si 0.88 19.55 27.74 -169.99 -4.71 14.83 16 15 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 18 N -0.59 -6.26 2.48 -173.92 -0.43 -6.69 16 19 C 0.08 0.57 9.40 59.85 0.56 1.14 16 20 C 0.52 6.83 7.67 -10.99 -0.08 6.75 16 21 O -0.53 -9.26 15.36 5.56 0.09 -9.17 16 22 C -0.06 -0.63 4.43 -29.04 -0.13 -0.76 16 23 C -0.01 -0.13 5.45 -81.60 -0.44 -0.58 16 24 C 0.00 0.01 11.79 -17.81 -0.21 -0.20 16 25 N -0.49 -7.95 11.25 -14.66 -0.16 -8.12 16 26 C 0.18 2.15 12.56 -90.37 -1.14 1.01 16 27 N -0.46 -5.03 3.15 -121.36 -0.38 -5.41 16 28 C 0.07 0.44 10.83 59.85 0.65 1.09 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.36 6.66 -51.93 -0.35 0.01 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.70 7.84 -51.93 -0.41 0.30 16 34 H 0.35 6.28 8.43 -39.30 -0.33 5.95 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.37 7.79 5.76 -40.82 -0.24 7.55 16 38 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.38 6.43 -51.93 -0.33 0.05 16 41 H 0.07 0.34 6.44 -51.93 -0.33 0.01 16 42 H 0.09 0.65 6.89 -51.93 -0.36 0.29 16 43 H 0.12 1.21 8.11 -51.93 -0.42 0.79 16 44 H 0.17 2.84 8.06 -52.49 -0.42 2.42 16 45 H 0.20 1.56 8.06 -52.48 -0.42 1.14 16 46 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.08 0.47 7.67 -51.93 -0.40 0.07 16 LS Contribution 398.29 15.07 6.00 6.00 Total: -1.00 -39.26 398.29 -7.81 -47.07 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: -7.31 Total: 14.78 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: -1.03 Total: 12.58 kcal Atomic # 7 Polarization: -69.88 SS G_CDS: -0.93 Total: -70.81 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: 0.17 Total: -24.44 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.71 Total: 14.83 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -39.26 -7.81 -47.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753720726.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.031 kcal (2) G-P(sol) polarization free energy of solvation -39.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds