Wall clock time and date at job start Tue Mar 31 2020 20:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47227 * 2 1 4 4 N 1.28442 * 125.19272 * 272.34027 * 3 2 1 5 5 C 1.30859 * 110.92705 * 179.97438 * 4 3 2 6 6 C 1.39680 * 107.86223 * 359.77748 * 5 4 3 7 7 C 1.36603 * 125.18518 * 92.31485 * 3 2 1 8 8 C 1.47160 * 126.88743 * 359.97438 * 7 3 2 9 9 O 1.21629 * 119.99777 * 5.34202 * 8 7 3 10 10 N 1.34770 * 120.00001 * 185.33414 * 8 7 3 11 11 C 1.46503 * 119.99784 * 174.56106 * 10 8 7 12 12 H 1.08999 * 109.47156 * 35.00112 * 11 10 8 13 13 C 1.52996 * 109.47314 * 274.99726 * 11 10 8 14 14 C 1.52998 * 109.46984 * 155.00126 * 11 10 8 15 15 C 1.52999 * 109.47513 * 295.00106 * 14 11 10 16 16 N 1.46898 * 109.47578 * 180.02562 * 15 14 11 17 17 C 1.46904 * 110.99842 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.47094 * 179.97438 * 17 16 15 19 19 O 1.21297 * 119.99901 * 359.97438 * 18 17 16 20 20 N 1.34775 * 120.00346 * 179.97438 * 18 17 16 21 21 C 1.37101 * 120.00046 * 179.97438 * 20 18 17 22 22 H 1.07998 * 120.00007 * 0.02562 * 21 20 18 23 23 C 1.38945 * 119.99828 * 180.02562 * 21 20 18 24 24 N 1.31410 * 120.00075 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00014 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47162 * 59.99995 * 25 23 21 27 27 H 1.48506 * 109.47097 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.46971 * 300.00234 * 25 23 21 29 29 H 1.09000 * 109.47381 * 59.99199 * 1 2 3 30 30 H 1.08999 * 109.47421 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47040 * 299.99580 * 1 2 3 32 32 H 1.09001 * 109.47040 * 240.00420 * 2 1 3 33 33 H 1.08998 * 109.46888 * 120.00656 * 2 1 3 34 34 H 1.07995 * 126.07136 * 180.02562 * 5 4 3 35 35 H 1.07999 * 127.32076 * 180.27437 * 6 5 4 36 36 H 0.96994 * 120.00021 * 354.56449 * 10 8 7 37 37 H 1.08997 * 109.47517 * 179.97438 * 13 11 10 38 38 H 1.09000 * 109.47303 * 300.00839 * 13 11 10 39 39 H 1.09009 * 109.46734 * 60.00415 * 13 11 10 40 40 H 1.09000 * 109.47342 * 175.00197 * 14 11 10 41 41 H 1.09006 * 109.47434 * 54.99702 * 14 11 10 42 42 H 1.09004 * 109.47232 * 59.99727 * 15 14 11 43 43 H 1.09009 * 109.46939 * 300.00216 * 15 14 11 44 44 H 1.00906 * 110.99884 * 303.95047 * 16 15 14 45 45 H 1.09000 * 109.46696 * 299.99036 * 17 16 15 46 46 H 1.08992 * 109.47555 * 59.99612 * 17 16 15 47 47 H 0.97001 * 119.99662 * 0.02562 * 20 18 17 48 48 H 0.97005 * 120.00398 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2247 2.0934 -1.0488 5 6 2.6594 3.2849 -0.7266 6 6 2.7370 3.3504 0.6665 7 6 2.3233 2.1083 1.1155 8 6 2.2251 1.6626 2.5146 9 8 1.9317 0.5093 2.7662 10 7 2.4604 2.5321 3.5169 11 6 2.2472 2.1224 4.9073 12 1 2.5122 1.0712 5.0210 13 6 0.7760 2.3204 5.2775 14 6 3.1239 2.9720 5.8295 15 6 4.5982 2.6802 5.5430 16 7 5.4399 3.4956 6.4289 17 6 6.8654 3.2416 6.1811 18 6 7.6957 4.0941 7.1057 19 8 7.1532 4.8403 7.8932 20 7 9.0409 4.0275 7.0576 21 6 9.7962 4.8036 7.8984 22 1 9.3132 5.4680 8.5995 23 6 11.1831 4.7353 7.8484 24 7 11.7708 3.9272 6.9948 25 14 12.2122 5.7921 8.9944 26 1 11.8871 5.4554 10.4037 27 1 13.6533 5.5358 8.7435 28 1 11.9144 7.2257 8.7466 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.9095 4.0783 -1.4153 35 1 3.0539 4.1911 1.2659 36 1 2.7709 3.4292 3.3179 37 1 0.6172 2.0151 6.3117 38 1 0.5109 3.3715 5.1636 39 1 0.1514 1.7150 4.6204 40 1 2.9006 2.7291 6.8683 41 1 2.9214 4.0283 5.6517 42 1 4.8215 2.9231 4.5042 43 1 4.8007 1.6240 5.7208 44 1 5.2252 4.4765 6.3297 45 1 7.0838 2.1892 6.3627 46 1 7.1042 3.4890 5.1469 47 1 9.4747 3.4311 6.4275 48 1 12.7391 3.8798 6.9596 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753959641.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:42 Heat of formation + Delta-G solvation = -2.944274 kcal Electronic energy + Delta-G solvation = -28350.507818 eV Core-core repulsion = 24248.907683 eV Total energy + Delta-G solvation = -4101.600135 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.87188 -39.95830 -38.32509 -37.03582 -35.23618 -34.72398 -33.83407 -32.48847 -31.24058 -30.58646 -30.12864 -29.26303 -26.27408 -24.75978 -24.16815 -23.59796 -22.36502 -21.89018 -20.92578 -20.27805 -19.24107 -18.33254 -17.87908 -16.86834 -16.51196 -16.21770 -15.90806 -15.51417 -15.25822 -15.00829 -14.71480 -14.52432 -14.40474 -14.19568 -13.92441 -13.77089 -13.66725 -13.36087 -13.11811 -12.98013 -12.77890 -12.49907 -12.32576 -12.26230 -11.73800 -11.69719 -11.53232 -11.36221 -11.19061 -11.15367 -11.07194 -10.97714 -10.44636 -10.34093 -10.21781 -9.65659 -9.50542 -9.43390 -9.33745 -8.47487 -8.08007 -7.96589 -6.41978 -3.83038 0.90973 2.00364 2.28842 2.83773 2.87599 3.19836 3.25596 3.29921 3.89931 4.00313 4.14426 4.19682 4.26694 4.55653 4.64207 4.72234 4.73162 4.80451 4.87639 4.93604 5.13232 5.17712 5.20509 5.21253 5.26236 5.29452 5.35369 5.42986 5.45536 5.48420 5.62597 5.68276 5.75451 5.84209 5.89845 5.97378 6.02167 6.11791 6.19817 6.26126 6.38608 7.04415 7.18251 7.54562 7.63651 7.68454 7.79052 8.05572 8.60690 9.17201 9.53733 10.05106 10.75629 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016551 B = 0.001865 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.331725 B =15008.759727 C =16009.940699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.108 3.892 3 N -0.253 5.253 4 N -0.277 5.277 5 C -0.004 4.004 6 C -0.188 4.188 7 C -0.040 4.040 8 C 0.594 3.406 9 O -0.540 6.540 10 N -0.707 5.707 11 C 0.144 3.856 12 H 0.095 0.905 13 C -0.162 4.162 14 C -0.125 4.125 15 C 0.059 3.941 16 N -0.669 5.669 17 C 0.051 3.949 18 C 0.440 3.560 19 O -0.584 6.584 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.187 0.813 35 H 0.161 0.839 36 H 0.403 0.597 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.026 0.974 43 H 0.071 0.929 44 H 0.348 0.652 45 H 0.085 0.915 46 H 0.043 0.957 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.227 -5.777 -15.032 27.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.012 4.012 3 N -0.042 5.042 4 N -0.110 5.110 5 C -0.179 4.179 6 C -0.217 4.217 7 C -0.168 4.168 8 C 0.379 3.621 9 O -0.418 6.418 10 N -0.359 5.359 11 C 0.040 3.960 12 H 0.113 0.887 13 C -0.221 4.221 14 C -0.163 4.163 15 C -0.071 4.071 16 N -0.301 5.301 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.138 0.862 34 H 0.204 0.796 35 H 0.178 0.822 36 H 0.239 0.761 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.112 0.888 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.090 0.910 44 H 0.167 0.833 45 H 0.104 0.896 46 H 0.061 0.939 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.964 -7.412 -14.712 28.262 hybrid contribution 1.463 1.580 -0.258 2.169 sum -21.501 -5.832 -14.971 26.841 Atomic orbital electron populations 1.22076 0.93465 1.03565 1.02957 1.22263 0.96181 0.76550 1.06176 1.45873 1.44265 1.12366 1.01646 1.73216 1.18317 1.05616 1.13848 1.23595 1.04251 0.95039 0.95014 1.22288 1.06923 0.96748 0.95785 1.21423 1.11556 0.94029 0.89842 1.16896 0.76916 0.85157 0.83092 1.90771 1.48829 1.17630 1.84527 1.45825 1.67821 1.16240 1.06014 1.21079 0.95281 1.00738 0.78922 0.88736 1.22170 0.95436 1.02214 1.02233 1.21891 0.93934 0.99964 1.00554 1.21975 0.92191 0.98956 0.93990 1.60073 1.02904 1.12124 1.55010 1.21665 0.88441 1.00777 0.97306 1.19809 0.83041 0.87016 0.87570 1.90519 1.71671 1.42916 1.41723 1.41863 1.04225 1.38757 1.35140 1.19657 0.87993 1.19686 1.15655 0.87954 1.25271 0.97083 0.97744 0.97869 1.69605 1.10917 1.37572 1.36207 0.85908 0.78121 0.79930 0.80195 1.19870 1.20980 1.19919 0.91840 0.89989 0.91823 0.88391 0.86153 0.79614 0.82193 0.76124 0.91034 0.92231 0.92309 0.88828 0.91161 0.95603 0.91036 0.83272 0.89647 0.93947 0.77454 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 10.24 37.16 0.38 -0.72 16 2 C 0.11 0.87 6.64 -4.04 -0.03 0.84 16 3 N -0.25 -2.57 3.35 -57.14 -0.19 -2.76 16 4 N -0.28 -2.93 11.90 30.59 0.36 -2.56 16 5 C 0.00 -0.03 12.03 -17.43 -0.21 -0.24 16 6 C -0.19 -1.55 10.50 -38.98 -0.41 -1.95 16 7 C -0.04 -0.40 6.96 -82.06 -0.57 -0.97 16 8 C 0.59 6.04 7.76 -12.64 -0.10 5.94 16 9 O -0.54 -6.69 14.25 5.25 0.07 -6.62 16 10 N -0.71 -5.64 4.52 -54.97 -0.25 -5.89 16 11 C 0.14 1.18 2.62 -67.93 -0.18 1.00 16 12 H 0.09 0.92 7.50 -51.93 -0.39 0.53 16 13 C -0.16 -1.19 9.48 37.16 0.35 -0.84 16 14 C -0.13 -1.09 5.01 -26.73 -0.13 -1.22 16 15 C 0.06 0.66 5.57 -3.83 -0.02 0.64 16 16 N -0.67 -10.31 6.13 -115.05 -0.70 -11.01 16 17 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 18 C 0.44 10.36 7.82 -10.99 -0.09 10.28 16 19 O -0.58 -15.77 15.78 5.54 0.09 -15.68 16 20 N -0.56 -14.30 5.29 -10.96 -0.06 -14.35 16 21 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.56 13.05 55.50 0.72 -23.83 16 25 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.12 1.07 6.09 -51.93 -0.32 0.75 16 34 H 0.19 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.16 0.87 7.58 -52.49 -0.40 0.47 16 36 H 0.40 2.49 7.63 -40.82 -0.31 2.18 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.03 0.27 7.75 -51.93 -0.40 -0.13 16 43 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 44 H 0.35 5.42 8.43 -39.29 -0.33 5.09 16 45 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 46 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 48 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 405.23 15.07 6.11 6.11 Total: -1.00 -34.08 405.23 -7.62 -41.70 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -7.48 Total: 13.32 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -1.27 Total: 5.59 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -0.11 Total: -60.42 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: 0.16 Total: -22.29 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.08 -7.62 -41.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753959641.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.755 kcal (2) G-P(sol) polarization free energy of solvation -34.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds