Wall clock time and date at job start Tue Mar 31 2020 20:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47227 * 2 1 4 4 N 1.28442 * 125.19272 * 272.34027 * 3 2 1 5 5 C 1.30859 * 110.92705 * 179.97438 * 4 3 2 6 6 C 1.39680 * 107.86223 * 359.77748 * 5 4 3 7 7 C 1.36603 * 125.18518 * 92.31485 * 3 2 1 8 8 C 1.47160 * 126.88743 * 359.97438 * 7 3 2 9 9 O 1.21629 * 119.99777 * 5.34202 * 8 7 3 10 10 N 1.34770 * 120.00001 * 185.33414 * 8 7 3 11 11 C 1.46503 * 119.99784 * 174.56106 * 10 8 7 12 12 H 1.08999 * 109.47156 * 35.00112 * 11 10 8 13 13 C 1.52996 * 109.47314 * 274.99726 * 11 10 8 14 14 C 1.52998 * 109.46984 * 155.00126 * 11 10 8 15 15 C 1.52999 * 109.47513 * 295.00106 * 14 11 10 16 16 N 1.46898 * 109.47578 * 180.02562 * 15 14 11 17 17 C 1.46904 * 110.99842 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.47094 * 179.97438 * 17 16 15 19 19 O 1.21297 * 119.99901 * 359.97438 * 18 17 16 20 20 N 1.34775 * 120.00346 * 179.97438 * 18 17 16 21 21 C 1.37101 * 120.00046 * 179.97438 * 20 18 17 22 22 H 1.07998 * 120.00007 * 0.02562 * 21 20 18 23 23 C 1.38945 * 119.99828 * 180.02562 * 21 20 18 24 24 N 1.31410 * 120.00075 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00014 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47162 * 59.99995 * 25 23 21 27 27 H 1.48506 * 109.47097 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.46971 * 300.00234 * 25 23 21 29 29 H 1.09000 * 109.47381 * 59.99199 * 1 2 3 30 30 H 1.08999 * 109.47421 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47040 * 299.99580 * 1 2 3 32 32 H 1.09001 * 109.47040 * 240.00420 * 2 1 3 33 33 H 1.08998 * 109.46888 * 120.00656 * 2 1 3 34 34 H 1.07995 * 126.07136 * 180.02562 * 5 4 3 35 35 H 1.07999 * 127.32076 * 180.27437 * 6 5 4 36 36 H 0.96994 * 120.00021 * 354.56449 * 10 8 7 37 37 H 1.08997 * 109.47517 * 179.97438 * 13 11 10 38 38 H 1.09000 * 109.47303 * 300.00839 * 13 11 10 39 39 H 1.09009 * 109.46734 * 60.00415 * 13 11 10 40 40 H 1.09000 * 109.47342 * 175.00197 * 14 11 10 41 41 H 1.09006 * 109.47434 * 54.99702 * 14 11 10 42 42 H 1.09004 * 109.47232 * 59.99727 * 15 14 11 43 43 H 1.09009 * 109.46939 * 300.00216 * 15 14 11 44 44 H 1.00906 * 110.99884 * 303.95047 * 16 15 14 45 45 H 1.09000 * 109.46696 * 299.99036 * 17 16 15 46 46 H 1.08992 * 109.47555 * 59.99612 * 17 16 15 47 47 H 0.97001 * 119.99662 * 0.02562 * 20 18 17 48 48 H 0.97005 * 120.00398 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2247 2.0934 -1.0488 5 6 2.6594 3.2849 -0.7266 6 6 2.7370 3.3504 0.6665 7 6 2.3233 2.1083 1.1155 8 6 2.2251 1.6626 2.5146 9 8 1.9317 0.5093 2.7662 10 7 2.4604 2.5321 3.5169 11 6 2.2472 2.1224 4.9073 12 1 2.5122 1.0712 5.0210 13 6 0.7760 2.3204 5.2775 14 6 3.1239 2.9720 5.8295 15 6 4.5982 2.6802 5.5430 16 7 5.4399 3.4956 6.4289 17 6 6.8654 3.2416 6.1811 18 6 7.6957 4.0941 7.1057 19 8 7.1532 4.8403 7.8932 20 7 9.0409 4.0275 7.0576 21 6 9.7962 4.8036 7.8984 22 1 9.3132 5.4680 8.5995 23 6 11.1831 4.7353 7.8484 24 7 11.7708 3.9272 6.9948 25 14 12.2122 5.7921 8.9944 26 1 11.8871 5.4554 10.4037 27 1 13.6533 5.5358 8.7435 28 1 11.9144 7.2257 8.7466 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.9095 4.0783 -1.4153 35 1 3.0539 4.1911 1.2659 36 1 2.7709 3.4292 3.3179 37 1 0.6172 2.0151 6.3117 38 1 0.5109 3.3715 5.1636 39 1 0.1514 1.7150 4.6204 40 1 2.9006 2.7291 6.8683 41 1 2.9214 4.0283 5.6517 42 1 4.8215 2.9231 4.5042 43 1 4.8007 1.6240 5.7208 44 1 5.2252 4.4765 6.3297 45 1 7.0838 2.1892 6.3627 46 1 7.1042 3.4890 5.1469 47 1 9.4747 3.4311 6.4275 48 1 12.7391 3.8798 6.9596 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753959641.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:41 Heat of formation + Delta-G solvation = -28.674388 kcal Electronic energy + Delta-G solvation = -28351.623559 eV Core-core repulsion = 24248.907683 eV Total energy + Delta-G solvation = -4102.715876 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.54101 -40.72207 -40.13278 -37.97311 -36.36196 -35.77402 -35.38332 -33.35269 -33.18121 -31.36876 -30.74682 -30.20787 -27.78330 -25.87521 -25.28951 -24.37924 -23.24419 -22.64986 -21.66568 -21.12041 -20.89166 -19.90178 -19.00461 -17.83354 -17.61882 -17.22512 -16.99716 -16.54199 -16.46412 -16.05198 -15.88208 -15.69435 -15.38384 -15.20089 -15.11911 -14.90883 -14.76524 -14.25649 -14.00566 -13.79718 -13.60655 -13.51724 -13.47286 -13.26055 -13.04187 -12.92856 -12.79886 -12.43123 -12.31727 -12.26004 -12.13227 -12.02867 -11.84994 -11.78217 -11.49427 -11.11964 -10.42048 -10.33478 -10.09636 -10.01579 -9.99926 -9.31050 -8.46118 -5.95168 0.20610 1.36441 1.40616 1.42539 1.53581 1.63844 2.05397 2.14123 2.17477 2.29604 2.89637 3.21072 3.48104 3.54907 3.56324 3.90884 3.98065 4.02161 4.07022 4.18303 4.21971 4.29292 4.31679 4.44898 4.47273 4.53418 4.57330 4.62255 4.67261 4.70317 4.80005 4.82294 4.86465 4.96079 5.05310 5.09298 5.21471 5.32729 5.41172 5.47305 5.55589 5.73879 5.89119 6.10323 6.37738 6.45807 6.60097 7.00671 7.09714 7.12603 7.56384 8.11270 8.70973 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016551 B = 0.001865 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.331725 B =15008.759727 C =16009.940699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.103 3.897 3 N -0.264 5.264 4 N -0.302 5.302 5 C -0.009 4.009 6 C -0.181 4.181 7 C -0.061 4.061 8 C 0.592 3.408 9 O -0.569 6.569 10 N -0.696 5.696 11 C 0.151 3.849 12 H 0.079 0.921 13 C -0.157 4.157 14 C -0.114 4.114 15 C 0.061 3.939 16 N -0.682 5.682 17 C 0.065 3.935 18 C 0.438 3.562 19 O -0.622 6.622 20 N -0.574 5.574 21 C -0.335 4.335 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.270 1.270 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.047 0.953 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.213 0.787 35 H 0.189 0.811 36 H 0.414 0.586 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.045 0.955 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.039 0.961 43 H 0.066 0.934 44 H 0.347 0.653 45 H 0.098 0.902 46 H 0.066 0.934 47 H 0.396 0.604 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.394 -5.088 -15.579 27.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.016 4.016 3 N -0.053 5.053 4 N -0.135 5.135 5 C -0.185 4.185 6 C -0.209 4.209 7 C -0.189 4.189 8 C 0.379 3.621 9 O -0.448 6.448 10 N -0.348 5.348 11 C 0.046 3.954 12 H 0.097 0.903 13 C -0.215 4.215 14 C -0.152 4.152 15 C -0.068 4.068 16 N -0.314 5.314 17 C -0.068 4.068 18 C 0.225 3.775 19 O -0.508 6.508 20 N -0.211 5.211 21 C -0.464 4.464 22 H 0.098 0.902 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.195 1.195 29 H 0.080 0.920 30 H 0.120 0.880 31 H 0.066 0.934 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.230 0.770 35 H 0.206 0.794 36 H 0.252 0.748 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.057 0.943 43 H 0.085 0.915 44 H 0.166 0.834 45 H 0.116 0.884 46 H 0.084 0.916 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -23.137 -6.726 -15.279 28.531 hybrid contribution 1.469 1.363 -0.113 2.007 sum -21.668 -5.364 -15.392 27.114 Atomic orbital electron populations 1.22010 0.92617 1.04553 1.01961 1.22351 0.96884 0.76177 1.06172 1.46065 1.44646 1.12862 1.01692 1.73191 1.19252 1.06599 1.14423 1.24161 1.03386 0.95040 0.95867 1.22682 1.05594 0.96753 0.95912 1.21601 1.12643 0.94935 0.89708 1.17013 0.76612 0.84953 0.83571 1.90756 1.50290 1.18868 1.84932 1.45738 1.67062 1.16428 1.05539 1.20971 0.95799 0.99741 0.78846 0.90333 1.22117 0.94306 1.02696 1.02393 1.21781 0.92107 1.00875 1.00423 1.22031 0.92910 0.97920 0.93901 1.60063 1.02024 1.12576 1.56764 1.21515 0.88781 0.99868 0.96628 1.20872 0.82755 0.86491 0.87372 1.90487 1.72298 1.44584 1.43464 1.41947 1.05016 1.38916 1.35213 1.19647 0.89021 1.20942 1.16803 0.90171 1.26065 0.97579 0.98660 0.99101 1.69670 1.11453 1.38147 1.36904 0.84974 0.76918 0.78275 0.78087 1.19744 1.19583 1.19542 0.92034 0.88049 0.93382 0.87224 0.87235 0.76996 0.79421 0.74833 0.90241 0.91105 0.93551 0.89113 0.89666 0.94310 0.91529 0.83405 0.88361 0.91634 0.77034 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 10.24 71.98 0.74 -1.33 16 2 C 0.10 1.68 6.64 86.38 0.57 2.26 16 3 N -0.26 -5.28 3.35 -334.69 -1.12 -6.40 16 4 N -0.30 -6.13 11.90 -57.14 -0.68 -6.81 16 5 C -0.01 -0.15 12.03 85.19 1.02 0.88 16 6 C -0.18 -2.60 10.50 22.66 0.24 -2.36 16 7 C -0.06 -1.15 6.96 40.78 0.28 -0.86 16 8 C 0.59 11.65 7.76 86.59 0.67 12.32 16 9 O -0.57 -14.21 14.25 -4.12 -0.06 -14.27 16 10 N -0.70 -9.95 4.52 -446.07 -2.02 -11.97 16 11 C 0.15 2.25 2.62 44.99 0.12 2.37 16 12 H 0.08 1.48 7.50 -2.39 -0.02 1.46 16 13 C -0.16 -2.06 9.48 71.98 0.68 -1.38 16 14 C -0.11 -1.74 5.01 30.59 0.15 -1.58 16 15 C 0.06 1.25 5.57 86.30 0.48 1.73 16 16 N -0.68 -19.89 6.13 -517.92 -3.17 -23.06 16 17 C 0.06 2.16 6.17 85.56 0.53 2.69 16 18 C 0.44 20.58 7.82 87.66 0.69 21.26 16 19 O -0.62 -33.92 15.78 -3.08 -0.05 -33.97 16 20 N -0.57 -29.35 5.29 -306.98 -1.62 -30.97 16 21 C -0.33 -18.94 9.68 84.04 0.81 -18.12 16 22 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 23 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 24 N -0.92 -49.69 13.05 21.66 0.28 -49.40 16 25 Si 0.99 42.70 29.55 68.60 2.03 44.73 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 27 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 28 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.11 2.02 6.09 -2.39 -0.01 2.00 16 34 H 0.21 1.86 8.06 -2.91 -0.02 1.84 16 35 H 0.19 1.43 7.58 -2.91 -0.02 1.41 16 36 H 0.41 4.06 7.63 -92.71 -0.71 3.35 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 40 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 42 H 0.04 0.71 7.75 -2.38 -0.02 0.70 16 43 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 44 H 0.35 10.27 8.43 -89.69 -0.76 9.51 16 45 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 46 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.40 19.28 7.90 -92.71 -0.73 18.55 16 48 H 0.28 14.05 8.31 -92.70 -0.77 13.28 16 Total: -1.00 -74.13 405.23 -0.15 -74.28 By element: Atomic # 1 Polarization: 41.47 SS G_CDS: -1.20 Total: 40.27 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: 7.46 Total: 17.56 kcal Atomic # 7 Polarization: -120.28 SS G_CDS: -8.33 Total: -128.61 kcal Atomic # 8 Polarization: -48.13 SS G_CDS: -0.11 Total: -48.23 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -74.13 -0.15 -74.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753959641.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.604 kcal (2) G-P(sol) polarization free energy of solvation -74.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds