Wall clock time and date at job start Tue Mar 31 2020 20:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.47383 * 2 1 4 4 N 1.28440 * 125.18407 * 264.53074 * 3 2 1 5 5 C 1.30866 * 110.92603 * 180.02562 * 4 3 2 6 6 C 1.39675 * 107.85738 * 359.76858 * 5 4 3 7 7 C 1.36598 * 125.19253 * 84.54895 * 3 2 1 8 8 C 1.47165 * 126.88180 * 359.94246 * 7 3 2 9 9 O 1.21625 * 120.00136 * 5.38515 * 8 7 3 10 10 N 1.34779 * 119.99556 * 185.38230 * 8 7 3 11 11 C 1.46501 * 119.99523 * 174.74145 * 10 8 7 12 12 H 1.09000 * 109.47156 * 324.99228 * 11 10 8 13 13 C 1.52999 * 109.47480 * 84.99607 * 11 10 8 14 14 C 1.53005 * 109.46535 * 204.99627 * 11 10 8 15 15 C 1.53001 * 109.47188 * 64.99826 * 14 11 10 16 16 N 1.46901 * 109.46939 * 179.97438 * 15 14 11 17 17 C 1.46898 * 110.99823 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47220 * 180.02562 * 17 16 15 19 19 O 1.21294 * 119.99992 * 359.97438 * 18 17 16 20 20 N 1.34777 * 119.99902 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99775 * 179.97438 * 20 18 17 22 22 H 1.07995 * 120.00187 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00150 * 179.97438 * 21 20 18 24 24 N 1.31418 * 119.99799 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00083 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46978 * 60.00497 * 25 23 21 27 27 H 1.48498 * 109.47007 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47259 * 300.00237 * 25 23 21 29 29 H 1.09000 * 109.46662 * 60.00543 * 1 2 3 30 30 H 1.08997 * 109.47077 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47314 * 300.00869 * 1 2 3 32 32 H 1.08997 * 109.47613 * 239.99588 * 2 1 3 33 33 H 1.09000 * 109.46662 * 119.99457 * 2 1 3 34 34 H 1.08001 * 126.07181 * 180.02562 * 5 4 3 35 35 H 1.08011 * 127.32012 * 180.22981 * 6 5 4 36 36 H 0.96995 * 120.00271 * 354.73272 * 10 8 7 37 37 H 1.09005 * 109.46551 * 59.99747 * 13 11 10 38 38 H 1.08996 * 109.47162 * 179.97438 * 13 11 10 39 39 H 1.08994 * 109.47087 * 299.99680 * 13 11 10 40 40 H 1.09001 * 109.46808 * 184.99683 * 14 11 10 41 41 H 1.08995 * 109.47521 * 304.99772 * 14 11 10 42 42 H 1.09001 * 109.47129 * 299.99660 * 15 14 11 43 43 H 1.09007 * 109.47191 * 60.00214 * 15 14 11 44 44 H 1.00903 * 111.00087 * 303.94908 * 16 15 14 45 45 H 1.09005 * 109.47258 * 299.99596 * 17 16 15 46 46 H 1.08997 * 109.47560 * 59.99492 * 17 16 15 47 47 H 0.96995 * 120.00339 * 359.97438 * 20 18 17 48 48 H 0.96995 * 119.99741 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3595 2.0456 -1.0450 5 6 2.7538 3.2515 -0.7241 6 6 2.6531 3.3801 0.6631 7 6 2.1809 2.1588 1.1113 8 6 1.9034 1.7765 2.5050 9 8 1.5771 0.6350 2.7691 10 7 2.0108 2.6914 3.4888 11 6 1.6242 2.3432 4.8583 12 1 0.7725 1.6634 4.8337 13 6 2.7996 1.6627 5.5628 14 6 1.2404 3.6143 5.6186 15 6 -0.0115 4.2274 4.9880 16 7 -0.3803 5.4474 5.7184 17 6 -1.5813 6.0645 5.1399 18 6 -1.9279 7.3108 5.9132 19 8 -1.2421 7.6511 6.8540 20 7 -2.9998 8.0471 5.5593 21 6 -3.3154 9.1806 6.2631 22 1 -2.7053 9.4832 7.1013 23 6 -4.4202 9.9401 5.8980 24 7 -5.1629 9.5716 4.8784 25 14 -4.8506 11.4840 6.8574 26 1 -3.7180 12.4419 6.7876 27 1 -6.0634 12.1090 6.2713 28 1 -5.1120 11.1289 8.2754 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 3.0927 4.0134 -1.4104 35 1 2.8946 4.2476 1.2595 36 1 2.3442 3.5804 3.2902 37 1 3.6513 2.3426 5.5874 38 1 2.5120 1.4041 6.5818 39 1 3.0730 0.7573 5.0211 40 1 1.0384 3.3671 6.6609 41 1 2.0607 4.3300 5.5674 42 1 0.1905 4.4745 3.9458 43 1 -0.8321 3.5116 5.0394 44 1 -0.5101 5.2556 6.7005 45 1 -1.3905 6.3248 4.0987 46 1 -2.4124 5.3612 5.1921 47 1 -3.5480 7.7752 4.8067 48 1 -5.9344 10.1016 4.6238 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753959643.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:45 Heat of formation + Delta-G solvation = -3.228085 kcal Electronic energy + Delta-G solvation = -28481.918066 eV Core-core repulsion = 24380.305624 eV Total energy + Delta-G solvation = -4101.612442 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.83433 -39.92904 -38.32922 -37.02060 -35.22459 -34.69113 -33.83695 -32.46965 -31.24446 -30.56608 -30.05793 -29.24693 -26.27137 -24.71542 -24.16461 -23.54910 -22.36241 -21.89650 -20.89791 -20.23142 -19.24735 -18.31966 -17.87728 -16.91569 -16.34381 -16.17462 -15.98100 -15.56115 -15.17288 -14.94805 -14.70957 -14.53797 -14.36977 -14.14276 -13.88172 -13.75263 -13.68695 -13.29320 -13.15039 -12.93814 -12.78673 -12.43371 -12.32231 -12.27527 -11.68892 -11.64964 -11.51911 -11.32283 -11.28861 -11.11771 -11.05395 -10.95866 -10.44954 -10.33769 -10.22128 -9.62209 -9.50912 -9.39644 -9.29518 -8.48596 -8.09146 -7.97064 -6.42433 -3.83449 0.94812 2.03529 2.32929 2.86126 2.91546 3.19545 3.25344 3.29636 3.89499 4.00071 4.17702 4.21250 4.28344 4.61048 4.69291 4.74089 4.78199 4.84499 4.89040 4.90314 5.08513 5.22218 5.23658 5.25628 5.28081 5.30105 5.40747 5.46201 5.48426 5.52628 5.61271 5.72106 5.77161 5.86318 5.90610 5.96764 6.02578 6.14536 6.21069 6.25637 6.42266 7.08519 7.17476 7.54243 7.62610 7.71612 7.82628 8.05161 8.60256 9.16819 9.53301 10.04643 10.75252 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013824 B = 0.001997 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.960459 B =14016.641213 C =15113.742572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 N -0.254 5.254 4 N -0.278 5.278 5 C -0.003 4.003 6 C -0.187 4.187 7 C -0.040 4.040 8 C 0.593 3.407 9 O -0.540 6.540 10 N -0.707 5.707 11 C 0.147 3.853 12 H 0.090 0.910 13 C -0.163 4.163 14 C -0.126 4.126 15 C 0.058 3.942 16 N -0.669 5.669 17 C 0.051 3.949 18 C 0.440 3.560 19 O -0.584 6.584 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.187 0.813 35 H 0.162 0.838 36 H 0.405 0.595 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.026 0.974 44 H 0.349 0.651 45 H 0.085 0.915 46 H 0.043 0.957 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.553 -19.267 -9.261 25.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.006 4.006 3 N -0.042 5.042 4 N -0.111 5.111 5 C -0.179 4.179 6 C -0.216 4.216 7 C -0.169 4.169 8 C 0.379 3.621 9 O -0.418 6.418 10 N -0.359 5.359 11 C 0.043 3.957 12 H 0.108 0.892 13 C -0.221 4.221 14 C -0.165 4.165 15 C -0.072 4.072 16 N -0.301 5.301 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.117 0.883 33 H 0.132 0.868 34 H 0.204 0.796 35 H 0.179 0.821 36 H 0.241 0.759 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.044 0.956 44 H 0.168 0.832 45 H 0.103 0.897 46 H 0.061 0.939 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.785 -20.224 -9.757 26.885 hybrid contribution -1.083 1.100 0.675 1.685 sum 13.702 -19.123 -9.083 25.218 Atomic orbital electron populations 1.22087 0.93315 1.03621 1.03183 1.22162 0.96261 0.76543 1.05636 1.45873 1.44006 1.12350 1.02018 1.73225 1.16673 1.07347 1.13805 1.23601 1.04709 0.94447 0.95133 1.22311 1.06332 0.97094 0.95877 1.21409 1.11848 0.93653 0.89985 1.16901 0.77151 0.85051 0.83016 1.90782 1.48258 1.18935 1.83838 1.45826 1.66224 1.15775 1.08051 1.21042 0.97991 0.96967 0.79729 0.89239 1.22167 0.98187 1.01037 1.00730 1.21897 0.98973 0.95668 0.99917 1.21974 0.95823 0.90692 0.98670 1.60090 1.36476 1.26100 1.07446 1.21666 0.91303 0.95721 0.99524 1.19803 0.83593 0.86508 0.87514 1.90519 1.52404 1.72537 1.31357 1.41863 1.24633 1.23219 1.30279 1.19657 1.10340 1.00375 1.12605 0.87956 1.25273 0.96093 0.99722 0.96866 1.69607 1.17687 1.40204 1.26840 0.85909 0.77819 0.81011 0.79434 1.19856 1.20978 1.19907 0.91887 0.90008 0.91494 0.88324 0.86845 0.79598 0.82080 0.75889 0.92180 0.91308 0.92010 0.89929 0.89986 0.91137 0.95558 0.83185 0.89674 0.93942 0.77458 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 10.24 37.16 0.38 -0.89 16 2 C 0.11 0.94 6.41 -4.04 -0.03 0.91 16 3 N -0.25 -2.63 3.35 -57.14 -0.19 -2.83 16 4 N -0.28 -3.01 11.90 30.59 0.36 -2.65 16 5 C 0.00 -0.03 12.03 -17.43 -0.21 -0.24 16 6 C -0.19 -1.59 10.50 -38.99 -0.41 -2.00 16 7 C -0.04 -0.41 6.96 -82.06 -0.57 -0.98 16 8 C 0.59 6.07 7.75 -12.64 -0.10 5.97 16 9 O -0.54 -6.63 14.39 5.26 0.08 -6.56 16 10 N -0.71 -5.77 4.52 -54.96 -0.25 -6.02 16 11 C 0.15 1.21 2.53 -67.93 -0.17 1.04 16 12 H 0.09 0.85 7.66 -51.93 -0.40 0.46 16 13 C -0.16 -1.22 9.48 37.16 0.35 -0.87 16 14 C -0.13 -1.10 5.01 -26.73 -0.13 -1.23 16 15 C 0.06 0.65 5.57 -3.82 -0.02 0.63 16 16 N -0.67 -10.26 6.13 -115.05 -0.70 -10.97 16 17 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 18 C 0.44 10.34 7.82 -10.98 -0.09 10.26 16 19 O -0.58 -15.74 15.78 5.55 0.09 -15.65 16 20 N -0.56 -14.27 5.29 -10.96 -0.06 -14.33 16 21 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 23 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 24 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 25 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 32 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.11 0.97 6.52 -51.93 -0.34 0.63 16 34 H 0.19 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.16 0.94 7.58 -52.48 -0.40 0.54 16 36 H 0.41 2.67 7.63 -40.82 -0.31 2.36 16 37 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.78 7.75 -51.93 -0.40 0.37 16 43 H 0.03 0.30 8.14 -51.92 -0.42 -0.13 16 44 H 0.35 5.52 8.43 -39.29 -0.33 5.19 16 45 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 46 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 48 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 405.52 15.07 6.11 6.11 Total: -1.00 -33.89 405.52 -7.63 -41.53 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -7.50 Total: 13.78 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -1.27 Total: 5.43 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: -0.11 Total: -60.62 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: 0.16 Total: -22.21 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.89 -7.63 -41.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753959643.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.297 kcal (2) G-P(sol) polarization free energy of solvation -33.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds