Wall clock time and date at job start Tue Mar 31 2020 20:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.47383 * 2 1 4 4 N 1.28440 * 125.18407 * 264.53074 * 3 2 1 5 5 C 1.30866 * 110.92603 * 180.02562 * 4 3 2 6 6 C 1.39675 * 107.85738 * 359.76858 * 5 4 3 7 7 C 1.36598 * 125.19253 * 84.54895 * 3 2 1 8 8 C 1.47165 * 126.88180 * 359.94246 * 7 3 2 9 9 O 1.21625 * 120.00136 * 5.38515 * 8 7 3 10 10 N 1.34779 * 119.99556 * 185.38230 * 8 7 3 11 11 C 1.46501 * 119.99523 * 174.74145 * 10 8 7 12 12 H 1.09000 * 109.47156 * 324.99228 * 11 10 8 13 13 C 1.52999 * 109.47480 * 84.99607 * 11 10 8 14 14 C 1.53005 * 109.46535 * 204.99627 * 11 10 8 15 15 C 1.53001 * 109.47188 * 64.99826 * 14 11 10 16 16 N 1.46901 * 109.46939 * 179.97438 * 15 14 11 17 17 C 1.46898 * 110.99823 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47220 * 180.02562 * 17 16 15 19 19 O 1.21294 * 119.99992 * 359.97438 * 18 17 16 20 20 N 1.34777 * 119.99902 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99775 * 179.97438 * 20 18 17 22 22 H 1.07995 * 120.00187 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00150 * 179.97438 * 21 20 18 24 24 N 1.31418 * 119.99799 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00083 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46978 * 60.00497 * 25 23 21 27 27 H 1.48498 * 109.47007 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47259 * 300.00237 * 25 23 21 29 29 H 1.09000 * 109.46662 * 60.00543 * 1 2 3 30 30 H 1.08997 * 109.47077 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47314 * 300.00869 * 1 2 3 32 32 H 1.08997 * 109.47613 * 239.99588 * 2 1 3 33 33 H 1.09000 * 109.46662 * 119.99457 * 2 1 3 34 34 H 1.08001 * 126.07181 * 180.02562 * 5 4 3 35 35 H 1.08011 * 127.32012 * 180.22981 * 6 5 4 36 36 H 0.96995 * 120.00271 * 354.73272 * 10 8 7 37 37 H 1.09005 * 109.46551 * 59.99747 * 13 11 10 38 38 H 1.08996 * 109.47162 * 179.97438 * 13 11 10 39 39 H 1.08994 * 109.47087 * 299.99680 * 13 11 10 40 40 H 1.09001 * 109.46808 * 184.99683 * 14 11 10 41 41 H 1.08995 * 109.47521 * 304.99772 * 14 11 10 42 42 H 1.09001 * 109.47129 * 299.99660 * 15 14 11 43 43 H 1.09007 * 109.47191 * 60.00214 * 15 14 11 44 44 H 1.00903 * 111.00087 * 303.94908 * 16 15 14 45 45 H 1.09005 * 109.47258 * 299.99596 * 17 16 15 46 46 H 1.08997 * 109.47560 * 59.99492 * 17 16 15 47 47 H 0.96995 * 120.00339 * 359.97438 * 20 18 17 48 48 H 0.96995 * 119.99741 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3595 2.0456 -1.0450 5 6 2.7538 3.2515 -0.7241 6 6 2.6531 3.3801 0.6631 7 6 2.1809 2.1588 1.1113 8 6 1.9034 1.7765 2.5050 9 8 1.5771 0.6350 2.7691 10 7 2.0108 2.6914 3.4888 11 6 1.6242 2.3432 4.8583 12 1 0.7725 1.6634 4.8337 13 6 2.7996 1.6627 5.5628 14 6 1.2404 3.6143 5.6186 15 6 -0.0115 4.2274 4.9880 16 7 -0.3803 5.4474 5.7184 17 6 -1.5813 6.0645 5.1399 18 6 -1.9279 7.3108 5.9132 19 8 -1.2421 7.6511 6.8540 20 7 -2.9998 8.0471 5.5593 21 6 -3.3154 9.1806 6.2631 22 1 -2.7053 9.4832 7.1013 23 6 -4.4202 9.9401 5.8980 24 7 -5.1629 9.5716 4.8784 25 14 -4.8506 11.4840 6.8574 26 1 -3.7180 12.4419 6.7876 27 1 -6.0634 12.1090 6.2713 28 1 -5.1120 11.1289 8.2754 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 3.0927 4.0134 -1.4104 35 1 2.8946 4.2476 1.2595 36 1 2.3442 3.5804 3.2902 37 1 3.6513 2.3426 5.5874 38 1 2.5120 1.4041 6.5818 39 1 3.0730 0.7573 5.0211 40 1 1.0384 3.3671 6.6609 41 1 2.0607 4.3300 5.5674 42 1 0.1905 4.4745 3.9458 43 1 -0.8321 3.5116 5.0394 44 1 -0.5101 5.2556 6.7005 45 1 -1.3905 6.3248 4.0987 46 1 -2.4124 5.3612 5.1921 47 1 -3.5480 7.7752 4.8067 48 1 -5.9344 10.1016 4.6238 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753959643.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:44 Heat of formation + Delta-G solvation = -28.741329 kcal Electronic energy + Delta-G solvation = -28483.024403 eV Core-core repulsion = 24380.305624 eV Total energy + Delta-G solvation = -4102.718779 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.52659 -40.69947 -40.13506 -37.96051 -36.35791 -35.77466 -35.37298 -33.34850 -33.17691 -31.36682 -30.72244 -30.19180 -27.78172 -25.86618 -25.28359 -24.34745 -23.24988 -22.66487 -21.63848 -21.12722 -20.86246 -19.90508 -19.00838 -17.85965 -17.62829 -17.10047 -16.92721 -16.73208 -16.43983 -15.98055 -15.85122 -15.65202 -15.39099 -15.36232 -15.01098 -14.77652 -14.75804 -14.32954 -13.95998 -13.84707 -13.59864 -13.54794 -13.47900 -13.21406 -13.03925 -12.92338 -12.79025 -12.43339 -12.29874 -12.21875 -12.11630 -12.10083 -11.83086 -11.76238 -11.49558 -11.12575 -10.39209 -10.34000 -10.08361 -10.01785 -9.98053 -9.33773 -8.46389 -5.95369 0.22439 1.37658 1.40495 1.42451 1.53457 1.65197 2.05229 2.15376 2.20020 2.29476 2.89141 3.20887 3.47902 3.56555 3.57301 3.95581 3.98815 4.04018 4.08457 4.11637 4.20125 4.28273 4.32916 4.43539 4.49935 4.53981 4.59166 4.62967 4.67108 4.70097 4.81258 4.83970 4.87838 4.92764 5.05981 5.09312 5.23000 5.34196 5.41056 5.47608 5.56833 5.75226 5.88685 6.09831 6.39440 6.42735 6.59899 7.01760 7.11387 7.12459 7.56194 8.11068 8.70832 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013824 B = 0.001997 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.960459 B =14016.641213 C =15113.742572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.110 3.890 3 N -0.265 5.265 4 N -0.302 5.302 5 C -0.010 4.010 6 C -0.181 4.181 7 C -0.060 4.060 8 C 0.592 3.408 9 O -0.566 6.566 10 N -0.696 5.696 11 C 0.154 3.846 12 H 0.077 0.923 13 C -0.157 4.157 14 C -0.115 4.115 15 C 0.061 3.939 16 N -0.679 5.679 17 C 0.064 3.936 18 C 0.438 3.562 19 O -0.622 6.622 20 N -0.574 5.574 21 C -0.334 4.334 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.922 5.922 25 Si 0.993 3.007 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.271 1.271 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.045 0.955 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.213 0.787 35 H 0.188 0.812 36 H 0.415 0.585 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.029 0.971 44 H 0.345 0.655 45 H 0.102 0.898 46 H 0.062 0.938 47 H 0.396 0.604 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.993 -19.055 -9.568 26.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.009 4.009 3 N -0.053 5.053 4 N -0.135 5.135 5 C -0.185 4.185 6 C -0.210 4.210 7 C -0.188 4.188 8 C 0.378 3.622 9 O -0.446 6.446 10 N -0.349 5.349 11 C 0.049 3.951 12 H 0.095 0.905 13 C -0.216 4.216 14 C -0.153 4.153 15 C -0.068 4.068 16 N -0.311 5.311 17 C -0.068 4.068 18 C 0.225 3.775 19 O -0.508 6.508 20 N -0.211 5.211 21 C -0.464 4.464 22 H 0.098 0.902 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.196 1.196 28 H -0.196 1.196 29 H 0.077 0.923 30 H 0.120 0.880 31 H 0.064 0.936 32 H 0.132 0.868 33 H 0.125 0.875 34 H 0.230 0.770 35 H 0.205 0.795 36 H 0.252 0.748 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.047 0.953 44 H 0.164 0.836 45 H 0.121 0.879 46 H 0.080 0.920 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.231 -20.019 -10.084 27.101 hybrid contribution -1.172 1.002 0.756 1.717 sum 14.060 -19.018 -9.327 25.423 Atomic orbital electron populations 1.22024 0.93068 1.04514 1.01785 1.22259 0.96432 0.76171 1.06040 1.46068 1.44340 1.12880 1.02042 1.73199 1.17570 1.08334 1.14410 1.24155 1.03971 0.94394 0.95952 1.22691 1.05061 0.97234 0.95992 1.21601 1.12793 0.94486 0.89935 1.16994 0.76865 0.84911 0.83406 1.90766 1.49598 1.20038 1.84209 1.45761 1.65518 1.15882 1.07698 1.20959 0.97957 0.96501 0.79679 0.90466 1.22112 0.98065 1.00450 1.00947 1.21796 0.97825 0.95574 1.00098 1.22047 0.96938 0.89182 0.98658 1.60107 1.35278 1.28192 1.07536 1.21525 0.92973 0.93164 0.99175 1.20865 0.82123 0.87489 0.86980 1.90487 1.53342 1.73858 1.33140 1.41947 1.25500 1.23202 1.30460 1.19645 1.11284 1.02243 1.13203 0.90181 1.26063 0.95428 1.02261 0.97612 1.69671 1.17873 1.41194 1.27503 0.84981 0.77863 0.77316 0.78152 1.19619 1.19585 1.19622 0.92344 0.88028 0.93570 0.86828 0.87465 0.77049 0.79476 0.74784 0.91287 0.90271 0.93426 0.89225 0.89515 0.90585 0.95252 0.83636 0.87947 0.92037 0.77035 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 10.24 71.98 0.74 -1.67 16 2 C 0.11 1.81 6.41 86.38 0.55 2.36 16 3 N -0.26 -5.40 3.35 -334.68 -1.12 -6.52 16 4 N -0.30 -6.33 11.90 -57.14 -0.68 -7.01 16 5 C -0.01 -0.16 12.03 85.18 1.02 0.87 16 6 C -0.18 -2.76 10.50 22.66 0.24 -2.53 16 7 C -0.06 -1.16 6.96 40.79 0.28 -0.88 16 8 C 0.59 11.74 7.75 86.59 0.67 12.41 16 9 O -0.57 -13.93 14.39 -4.11 -0.06 -13.99 16 10 N -0.70 -10.32 4.52 -446.05 -2.02 -12.34 16 11 C 0.15 2.29 2.53 44.99 0.11 2.40 16 12 H 0.08 1.39 7.66 -2.39 -0.02 1.38 16 13 C -0.16 -2.12 9.48 71.98 0.68 -1.44 16 14 C -0.11 -1.75 5.01 30.60 0.15 -1.60 16 15 C 0.06 1.23 5.57 86.30 0.48 1.71 16 16 N -0.68 -19.72 6.13 -517.92 -3.17 -22.90 16 17 C 0.06 2.14 6.17 85.56 0.53 2.67 16 18 C 0.44 20.55 7.82 87.66 0.69 21.23 16 19 O -0.62 -33.88 15.78 -3.07 -0.05 -33.93 16 20 N -0.57 -29.31 5.29 -306.98 -1.62 -30.93 16 21 C -0.33 -18.89 9.68 84.04 0.81 -18.08 16 22 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 23 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 24 N -0.92 -49.70 13.05 21.66 0.28 -49.42 16 25 Si 0.99 42.65 29.55 68.60 2.03 44.68 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 27 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 28 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.05 0.90 8.07 -2.39 -0.02 0.88 16 32 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.11 1.88 6.52 -2.39 -0.02 1.86 16 34 H 0.21 2.06 8.06 -2.91 -0.02 2.03 16 35 H 0.19 1.65 7.58 -2.90 -0.02 1.63 16 36 H 0.41 4.55 7.63 -92.71 -0.71 3.84 16 37 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.05 0.80 8.08 -2.39 -0.02 0.78 16 40 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.08 1.48 7.75 -2.39 -0.02 1.46 16 43 H 0.03 0.60 8.14 -2.38 -0.02 0.58 16 44 H 0.35 10.51 8.43 -89.69 -0.76 9.76 16 45 H 0.10 3.10 8.14 -2.38 -0.02 3.08 16 46 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.40 19.25 7.90 -92.71 -0.73 18.52 16 48 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -73.47 405.52 -0.17 -73.64 By element: Atomic # 1 Polarization: 42.71 SS G_CDS: -1.20 Total: 41.52 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 7.43 Total: 17.19 kcal Atomic # 7 Polarization: -120.78 SS G_CDS: -8.33 Total: -129.10 kcal Atomic # 8 Polarization: -47.81 SS G_CDS: -0.11 Total: -47.92 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -73.47 -0.17 -73.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753959643.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.898 kcal (2) G-P(sol) polarization free energy of solvation -73.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds