Wall clock time and date at job start Tue Mar 31 2020 20:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46769 * 2 1 4 4 C 1.53004 * 109.46705 * 240.00068 * 2 1 3 5 5 N 1.46903 * 109.46674 * 184.99895 * 4 2 1 6 6 C 1.46904 * 110.99708 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47015 * 180.02562 * 6 5 4 8 8 O 1.21293 * 120.00256 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00285 * 180.02562 * 7 6 5 10 10 C 1.37091 * 120.00423 * 179.97438 * 9 7 6 11 11 H 1.08005 * 119.99559 * 359.97438 * 10 9 7 12 12 C 1.38946 * 120.00370 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00477 * 180.02562 * 12 10 9 14 14 Si 1.86805 * 119.99826 * 359.97438 * 12 10 9 15 15 H 1.48507 * 109.46917 * 89.99942 * 14 12 10 16 16 H 1.48499 * 109.47151 * 210.00069 * 14 12 10 17 17 H 1.48503 * 109.46876 * 330.00238 * 14 12 10 18 18 N 1.46494 * 109.47118 * 120.00496 * 2 1 3 19 19 C 1.34784 * 119.99635 * 274.99773 * 18 2 1 20 20 O 1.21279 * 119.99925 * 359.97438 * 19 18 2 21 21 C 1.50700 * 119.99961 * 180.02562 * 19 18 2 22 22 C 1.52992 * 109.47257 * 180.02562 * 21 19 18 23 23 C 1.50700 * 109.47257 * 179.97438 * 22 21 19 24 24 C 1.39871 * 125.89967 * 124.71779 * 23 22 21 25 25 C 1.35316 * 107.91981 * 179.86298 * 24 23 22 26 26 N 1.34949 * 107.74390 * 0.39346 * 25 24 23 27 27 C 1.46506 * 126.03612 * 179.75224 * 26 25 24 28 28 N 1.30838 * 125.89640 * 305.01871 * 23 22 21 29 29 H 1.08997 * 109.47041 * 300.00119 * 1 2 3 30 30 H 1.09005 * 109.46855 * 59.99655 * 1 2 3 31 31 H 1.08996 * 109.47503 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47346 * 305.00057 * 4 2 1 33 33 H 1.09001 * 109.46950 * 65.00327 * 4 2 1 34 34 H 1.00898 * 111.00310 * 303.95288 * 5 4 2 35 35 H 1.09000 * 109.47481 * 300.00500 * 6 5 4 36 36 H 1.09002 * 109.46797 * 60.00200 * 6 5 4 37 37 H 0.96997 * 119.99524 * 359.97438 * 9 7 6 38 38 H 0.96998 * 120.00365 * 180.02562 * 13 12 10 39 39 H 0.96995 * 120.00292 * 95.27206 * 18 2 1 40 40 H 1.09004 * 109.46932 * 300.00223 * 21 19 18 41 41 H 1.08997 * 109.47392 * 59.99562 * 21 19 18 42 42 H 1.09004 * 109.47330 * 299.99977 * 22 21 19 43 43 H 1.09005 * 109.47124 * 59.99773 * 22 21 19 44 44 H 1.08001 * 126.03986 * 359.97438 * 24 23 22 45 45 H 1.07994 * 126.12658 * 180.14039 * 25 24 23 46 46 H 1.08999 * 109.46765 * 269.97486 * 27 26 25 47 47 H 1.09001 * 109.47130 * 29.97215 * 27 26 25 48 48 H 1.09001 * 109.46903 * 149.97386 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5040 -0.8267 -1.1905 6 6 4.0302 -1.5159 -2.3763 7 6 5.5315 -1.6055 -2.2803 8 8 6.1066 -1.1405 -1.3190 9 7 6.2353 -2.2014 -3.2632 10 6 7.6010 -2.2824 -3.1762 11 1 8.1130 -1.8683 -2.3201 12 6 8.3265 -2.8972 -4.1892 13 7 9.6356 -2.9754 -4.1056 14 14 7.4408 -3.6141 -5.6695 15 1 7.3207 -2.5762 -6.7249 16 1 8.2117 -4.7688 -6.1963 17 1 6.0859 -4.0670 -5.2641 18 7 2.0184 -0.6907 1.1961 19 6 2.1471 -0.0183 2.3571 20 8 1.8591 1.1585 2.4114 21 6 2.6500 -0.7286 3.5874 22 6 2.7008 0.2542 4.7588 23 6 3.2030 -0.4562 5.9892 24 6 4.2977 -0.0703 6.7697 25 6 4.4221 -0.9602 7.7815 26 7 3.4462 -1.8816 7.6411 27 6 3.2144 -3.0321 8.5180 28 7 2.6938 -1.5437 6.5088 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6053 -1.7198 -1.2952 33 1 1.7516 -0.1583 -2.1370 34 1 3.9280 0.0825 -1.0825 35 1 3.6093 -2.5200 -2.4296 36 1 3.7556 -0.9588 -3.2720 37 1 5.7754 -2.5729 -4.0322 38 1 10.1421 -3.4042 -4.8130 39 1 2.2528 -1.6308 1.1515 40 1 1.9778 -1.5510 3.8324 41 1 3.6492 -1.1205 3.3978 42 1 3.3727 1.0769 4.5140 43 1 1.7012 0.6457 4.9482 44 1 4.9307 0.7874 6.5965 45 1 5.1709 -0.9393 8.5594 46 1 3.7798 -3.8885 8.1507 47 1 3.5393 -2.7891 9.5297 48 1 2.1517 -3.2746 8.5260 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754227914.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:41 Heat of formation + Delta-G solvation = 2.938300 kcal Electronic energy + Delta-G solvation = -27949.909720 eV Core-core repulsion = 23848.564673 eV Total energy + Delta-G solvation = -4101.345047 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.35700 -39.78800 -38.49233 -36.77693 -34.72197 -34.29080 -33.69579 -32.22576 -31.66685 -30.86566 -30.10569 -27.75265 -27.19576 -25.09691 -24.41705 -23.09368 -21.47097 -21.23652 -20.32333 -19.61408 -19.37523 -18.35841 -17.39978 -16.81743 -16.64455 -15.85597 -15.79734 -15.49478 -15.19227 -14.88582 -14.55382 -14.34709 -14.03732 -14.00871 -13.88849 -13.57763 -13.28095 -13.17247 -12.89600 -12.86529 -12.68607 -12.52735 -12.24444 -12.15529 -12.05406 -12.01479 -11.70233 -11.67682 -11.32465 -11.17188 -10.94804 -10.67461 -10.60733 -9.98373 -9.78998 -9.58080 -9.38171 -8.98521 -8.74746 -8.60730 -8.22051 -8.16644 -6.31712 -3.83211 1.67850 2.29232 2.59883 2.76420 3.01464 3.05611 3.14062 3.27014 3.73264 4.03324 4.09749 4.23070 4.54014 4.64849 4.74674 4.80729 4.83579 4.91895 4.99515 5.03029 5.05915 5.17002 5.20373 5.28132 5.39646 5.42605 5.53133 5.54620 5.57867 5.61076 5.64020 5.78458 5.78719 5.91004 5.92309 5.98873 5.99714 6.06398 6.48898 6.57350 6.78731 7.03071 7.51547 7.53585 7.57465 7.63087 8.13867 8.34017 8.59022 8.94416 9.41699 9.82012 10.81418 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010175 B = 0.002116 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.245183 B =13228.678507 C =15266.595990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.086 0.914 4 C 0.048 3.952 5 N -0.667 5.667 6 C 0.048 3.952 7 C 0.449 3.551 8 O -0.563 6.563 9 N -0.591 5.591 10 C -0.305 4.305 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.269 1.269 18 N -0.709 5.709 19 C 0.518 3.482 20 O -0.551 6.551 21 C -0.134 4.134 22 C -0.020 4.020 23 C 0.078 3.922 24 C -0.266 4.266 25 C 0.051 3.949 26 N -0.380 5.380 27 C 0.102 3.898 28 N -0.295 5.295 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.043 0.957 34 H 0.353 0.647 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.370 0.630 38 H 0.273 0.727 39 H 0.406 0.594 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.149 0.851 45 H 0.173 0.827 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.565 0.936 17.757 25.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.104 0.896 4 C -0.082 4.082 5 N -0.299 5.299 6 C -0.085 4.085 7 C 0.235 3.765 8 O -0.445 6.445 9 N -0.230 5.230 10 C -0.433 4.433 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.521 5.521 14 Si 0.707 3.293 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.195 1.195 18 N -0.360 5.360 19 C 0.305 3.695 20 O -0.430 6.430 21 C -0.175 4.175 22 C -0.060 4.060 23 C -0.088 4.088 24 C -0.295 4.295 25 C -0.094 4.094 26 N -0.162 5.162 27 C -0.039 4.039 28 N -0.118 5.118 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.172 0.828 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.241 0.759 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.167 0.833 45 H 0.190 0.810 46 H 0.093 0.907 47 H 0.104 0.896 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.085 0.428 18.755 26.762 hybrid contribution 0.294 -0.035 -1.873 1.897 sum -18.791 0.393 16.882 25.264 Atomic orbital electron populations 1.22136 0.95087 1.02151 1.02572 1.20912 0.93527 0.97517 0.84116 0.89579 1.22320 0.89310 1.00710 0.95867 1.60043 1.03220 1.27048 1.39626 1.21711 0.95037 1.00026 0.91708 1.19710 0.87947 0.84150 0.84710 1.90576 1.70980 1.50420 1.32503 1.42207 1.07855 1.53029 1.19954 1.19428 0.79522 1.35957 1.08423 0.86294 1.25045 0.95453 0.97657 0.98069 1.69620 1.05080 1.43428 1.34006 0.86666 0.79583 0.79794 0.83293 1.19669 1.20180 1.19502 1.45846 1.66694 1.14538 1.08912 1.20588 0.77002 0.87182 0.84704 1.90675 1.50837 1.16069 1.85382 1.21591 1.03926 0.99570 0.92419 1.19731 1.02765 0.96200 0.87258 1.22358 0.95136 0.93813 0.97539 1.21479 1.03584 1.05204 0.99240 1.22533 0.94523 0.91329 1.01062 1.48500 1.23663 1.21967 1.22114 1.21834 1.04035 0.85955 0.92089 1.77287 1.18659 1.16901 0.98994 0.91838 0.91745 0.92389 0.90485 0.93940 0.82762 0.89499 0.93733 0.79721 0.91615 0.75938 0.88622 0.88375 0.89022 0.89611 0.83347 0.80987 0.90739 0.89607 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.48 37.16 0.35 -1.11 16 2 C 0.14 1.57 2.81 -67.93 -0.19 1.37 16 3 H 0.09 1.10 7.58 -51.93 -0.39 0.70 16 4 C 0.05 0.51 5.24 -3.82 -0.02 0.49 16 5 N -0.67 -9.68 5.85 -115.05 -0.67 -10.36 16 6 C 0.05 0.76 6.17 -4.98 -0.03 0.73 16 7 C 0.45 10.03 7.82 -10.99 -0.09 9.94 16 8 O -0.56 -15.00 15.78 5.55 0.09 -14.91 16 9 N -0.59 -13.94 5.09 -10.97 -0.06 -13.99 16 10 C -0.30 -8.60 10.16 -14.94 -0.15 -8.75 16 11 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 12 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 13 N -0.88 -25.74 13.96 55.50 0.77 -24.96 16 14 Si 0.88 19.26 27.74 -169.99 -4.71 14.54 16 15 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 16 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 17 H -0.27 -5.35 6.52 56.52 0.37 -4.99 16 18 N -0.71 -8.00 4.80 -53.80 -0.26 -8.26 16 19 C 0.52 6.60 7.79 -10.98 -0.09 6.51 16 20 O -0.55 -8.68 15.64 5.56 0.09 -8.59 16 21 C -0.13 -1.46 5.66 -27.89 -0.16 -1.62 16 22 C -0.02 -0.22 5.08 -27.89 -0.14 -0.36 16 23 C 0.08 0.91 6.49 -82.40 -0.53 0.37 16 24 C -0.27 -2.73 10.72 -40.01 -0.43 -3.16 16 25 C 0.05 0.44 11.49 -17.22 -0.20 0.24 16 26 N -0.38 -3.65 4.01 -68.16 -0.27 -3.92 16 27 C 0.10 0.53 11.47 59.85 0.69 1.22 16 28 N -0.30 -3.60 12.54 33.67 0.42 -3.18 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.35 5.66 8.43 -39.29 -0.33 5.33 16 35 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.37 7.63 5.76 -40.82 -0.24 7.40 16 38 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.41 4.18 8.60 -40.82 -0.35 3.83 16 40 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.09 1.02 8.08 -51.93 -0.42 0.60 16 43 H 0.09 0.97 8.10 -51.93 -0.42 0.54 16 44 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 45 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 46 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 48 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 408.11 15.07 6.15 6.15 Total: -1.00 -36.78 408.11 -7.16 -43.94 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: -7.63 Total: 16.64 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -1.08 Total: 6.90 kcal Atomic # 7 Polarization: -64.61 SS G_CDS: -0.06 Total: -64.68 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: 0.17 Total: -23.50 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.71 Total: 14.54 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.78 -7.16 -43.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754227914.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.881 kcal (2) G-P(sol) polarization free energy of solvation -36.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds