Wall clock time and date at job start Tue Mar 31 2020 20:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46769 * 2 1 4 4 C 1.53004 * 109.46705 * 240.00068 * 2 1 3 5 5 N 1.46903 * 109.46674 * 184.99895 * 4 2 1 6 6 C 1.46904 * 110.99708 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47015 * 180.02562 * 6 5 4 8 8 O 1.21293 * 120.00256 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00285 * 180.02562 * 7 6 5 10 10 C 1.37091 * 120.00423 * 179.97438 * 9 7 6 11 11 H 1.08005 * 119.99559 * 359.97438 * 10 9 7 12 12 C 1.38946 * 120.00370 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00477 * 180.02562 * 12 10 9 14 14 Si 1.86805 * 119.99826 * 359.97438 * 12 10 9 15 15 H 1.48507 * 109.46917 * 89.99942 * 14 12 10 16 16 H 1.48499 * 109.47151 * 210.00069 * 14 12 10 17 17 H 1.48503 * 109.46876 * 330.00238 * 14 12 10 18 18 N 1.46494 * 109.47118 * 120.00496 * 2 1 3 19 19 C 1.34784 * 119.99635 * 274.99773 * 18 2 1 20 20 O 1.21279 * 119.99925 * 359.97438 * 19 18 2 21 21 C 1.50700 * 119.99961 * 180.02562 * 19 18 2 22 22 C 1.52992 * 109.47257 * 180.02562 * 21 19 18 23 23 C 1.50700 * 109.47257 * 179.97438 * 22 21 19 24 24 C 1.39871 * 125.89967 * 124.71779 * 23 22 21 25 25 C 1.35316 * 107.91981 * 179.86298 * 24 23 22 26 26 N 1.34949 * 107.74390 * 0.39346 * 25 24 23 27 27 C 1.46506 * 126.03612 * 179.75224 * 26 25 24 28 28 N 1.30838 * 125.89640 * 305.01871 * 23 22 21 29 29 H 1.08997 * 109.47041 * 300.00119 * 1 2 3 30 30 H 1.09005 * 109.46855 * 59.99655 * 1 2 3 31 31 H 1.08996 * 109.47503 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47346 * 305.00057 * 4 2 1 33 33 H 1.09001 * 109.46950 * 65.00327 * 4 2 1 34 34 H 1.00898 * 111.00310 * 303.95288 * 5 4 2 35 35 H 1.09000 * 109.47481 * 300.00500 * 6 5 4 36 36 H 1.09002 * 109.46797 * 60.00200 * 6 5 4 37 37 H 0.96997 * 119.99524 * 359.97438 * 9 7 6 38 38 H 0.96998 * 120.00365 * 180.02562 * 13 12 10 39 39 H 0.96995 * 120.00292 * 95.27206 * 18 2 1 40 40 H 1.09004 * 109.46932 * 300.00223 * 21 19 18 41 41 H 1.08997 * 109.47392 * 59.99562 * 21 19 18 42 42 H 1.09004 * 109.47330 * 299.99977 * 22 21 19 43 43 H 1.09005 * 109.47124 * 59.99773 * 22 21 19 44 44 H 1.08001 * 126.03986 * 359.97438 * 24 23 22 45 45 H 1.07994 * 126.12658 * 180.14039 * 25 24 23 46 46 H 1.08999 * 109.46765 * 269.97486 * 27 26 25 47 47 H 1.09001 * 109.47130 * 29.97215 * 27 26 25 48 48 H 1.09001 * 109.46903 * 149.97386 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5040 -0.8267 -1.1905 6 6 4.0302 -1.5159 -2.3763 7 6 5.5315 -1.6055 -2.2803 8 8 6.1066 -1.1405 -1.3190 9 7 6.2353 -2.2014 -3.2632 10 6 7.6010 -2.2824 -3.1762 11 1 8.1130 -1.8683 -2.3201 12 6 8.3265 -2.8972 -4.1892 13 7 9.6356 -2.9754 -4.1056 14 14 7.4408 -3.6141 -5.6695 15 1 7.3207 -2.5762 -6.7249 16 1 8.2117 -4.7688 -6.1963 17 1 6.0859 -4.0670 -5.2641 18 7 2.0184 -0.6907 1.1961 19 6 2.1471 -0.0183 2.3571 20 8 1.8591 1.1585 2.4114 21 6 2.6500 -0.7286 3.5874 22 6 2.7008 0.2542 4.7588 23 6 3.2030 -0.4562 5.9892 24 6 4.2977 -0.0703 6.7697 25 6 4.4221 -0.9602 7.7815 26 7 3.4462 -1.8816 7.6411 27 6 3.2144 -3.0321 8.5180 28 7 2.6938 -1.5437 6.5088 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6053 -1.7198 -1.2952 33 1 1.7516 -0.1583 -2.1370 34 1 3.9280 0.0825 -1.0825 35 1 3.6093 -2.5200 -2.4296 36 1 3.7556 -0.9588 -3.2720 37 1 5.7754 -2.5729 -4.0322 38 1 10.1421 -3.4042 -4.8130 39 1 2.2528 -1.6308 1.1515 40 1 1.9778 -1.5510 3.8324 41 1 3.6492 -1.1205 3.3978 42 1 3.3727 1.0769 4.5140 43 1 1.7012 0.6457 4.9482 44 1 4.9307 0.7874 6.5965 45 1 5.1709 -0.9393 8.5594 46 1 3.7798 -3.8885 8.1507 47 1 3.5393 -2.7891 9.5297 48 1 2.1517 -3.2746 8.5260 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754227914.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:40 Heat of formation + Delta-G solvation = -27.235648 kcal Electronic energy + Delta-G solvation = -27951.218160 eV Core-core repulsion = 23848.564673 eV Total energy + Delta-G solvation = -4102.653488 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.09535 -40.80824 -40.24602 -37.85487 -36.06644 -35.50544 -35.07736 -33.73158 -33.01582 -31.73962 -30.87248 -29.07293 -27.88048 -26.61799 -25.31306 -24.39089 -22.28439 -22.00348 -21.32067 -21.22693 -20.43105 -20.23460 -18.27457 -17.94321 -17.56750 -17.34922 -16.74028 -16.65985 -16.42789 -16.16820 -15.76115 -15.44789 -15.09664 -15.00133 -14.80823 -14.75244 -14.57342 -14.34987 -14.11813 -14.04646 -13.61002 -13.48815 -13.21441 -13.12965 -13.02690 -12.92005 -12.85648 -12.79140 -12.64113 -12.40641 -12.20361 -11.97417 -11.80673 -11.50313 -11.49044 -10.83445 -10.43041 -10.24072 -10.16748 -9.94046 -9.47571 -9.32629 -8.40551 -6.01548 0.95422 1.30788 1.36493 1.45493 1.69350 1.74216 1.80525 1.97832 2.23851 2.35921 2.73484 3.16101 3.40937 3.57516 3.82078 3.86998 3.96264 4.13259 4.18171 4.18992 4.27349 4.33409 4.42591 4.45732 4.49729 4.59298 4.65545 4.68111 4.69616 4.71125 4.79010 4.83419 4.87429 5.00026 5.09599 5.10402 5.18593 5.30875 5.53326 5.64233 5.71155 5.90801 6.04833 6.19027 6.32249 6.60669 6.67579 6.76406 6.89415 7.36302 7.41141 7.98544 8.77214 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010175 B = 0.002116 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.245183 B =13228.678507 C =15266.595990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.143 3.857 3 H 0.062 0.938 4 C 0.056 3.944 5 N -0.683 5.683 6 C 0.063 3.937 7 C 0.447 3.553 8 O -0.615 6.615 9 N -0.591 5.591 10 C -0.328 4.328 11 H 0.053 0.947 12 C -0.018 4.018 13 N -0.936 5.936 14 Si 0.967 3.033 15 H -0.258 1.258 16 H -0.276 1.276 17 H -0.229 1.229 18 N -0.703 5.703 19 C 0.515 3.485 20 O -0.586 6.586 21 C -0.123 4.123 22 C -0.014 4.014 23 C 0.061 3.939 24 C -0.294 4.294 25 C 0.062 3.938 26 N -0.384 5.384 27 C 0.093 3.907 28 N -0.329 5.329 29 H 0.044 0.956 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.064 0.936 34 H 0.340 0.660 35 H 0.119 0.881 36 H 0.078 0.922 37 H 0.390 0.610 38 H 0.279 0.721 39 H 0.412 0.588 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.156 0.844 45 H 0.213 0.787 46 H 0.082 0.918 47 H 0.118 0.882 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.317 -0.889 16.513 26.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.038 3.962 3 H 0.080 0.920 4 C -0.073 4.073 5 N -0.315 5.315 6 C -0.069 4.069 7 C 0.235 3.765 8 O -0.499 6.499 9 N -0.233 5.233 10 C -0.457 4.457 11 H 0.071 0.929 12 C -0.216 4.216 13 N -0.577 5.577 14 Si 0.786 3.214 15 H -0.182 1.182 16 H -0.202 1.202 17 H -0.152 1.152 18 N -0.353 5.353 19 C 0.303 3.697 20 O -0.467 6.467 21 C -0.164 4.164 22 C -0.054 4.054 23 C -0.104 4.104 24 C -0.324 4.324 25 C -0.085 4.085 26 N -0.166 5.166 27 C -0.047 4.047 28 N -0.153 5.153 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.082 0.918 34 H 0.158 0.842 35 H 0.137 0.863 36 H 0.096 0.904 37 H 0.226 0.774 38 H 0.088 0.912 39 H 0.248 0.752 40 H 0.124 0.876 41 H 0.112 0.888 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.174 0.826 45 H 0.229 0.771 46 H 0.101 0.899 47 H 0.136 0.864 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -21.888 -1.429 17.505 28.064 hybrid contribution 1.213 0.572 -1.313 1.876 sum -20.676 -0.858 16.192 26.276 Atomic orbital electron populations 1.22049 0.93307 1.03149 1.02520 1.20978 0.94803 0.96325 0.84116 0.91980 1.22374 0.86579 1.02221 0.96144 1.60046 1.05545 1.26420 1.39534 1.21640 0.89239 1.02532 0.93475 1.21083 0.90906 0.81495 0.83030 1.90559 1.72991 1.51898 1.34488 1.42029 1.06065 1.53944 1.21286 1.18991 0.82000 1.37389 1.07348 0.92878 1.26155 0.96222 0.97349 1.01893 1.69810 1.07555 1.44526 1.35767 0.85342 0.79761 0.78761 0.77487 1.18215 1.20153 1.15180 1.45868 1.65934 1.14767 1.08750 1.20870 0.76560 0.86806 0.85510 1.90655 1.52542 1.17553 1.85966 1.21500 1.03729 0.99531 0.91623 1.19616 1.02152 0.96048 0.87573 1.22440 0.95908 0.94174 0.97873 1.21762 1.03927 1.06479 1.00189 1.23140 0.94349 0.89993 1.00996 1.48890 1.23279 1.22808 1.21605 1.22185 1.04468 0.85036 0.92981 1.77187 1.20106 1.17448 1.00595 0.93712 0.90009 0.90788 0.88254 0.91826 0.84201 0.86309 0.90415 0.77430 0.91183 0.75194 0.87565 0.88752 0.89790 0.90278 0.82645 0.77051 0.89915 0.86404 0.89379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.48 71.98 0.68 -1.75 16 2 C 0.14 2.89 2.81 45.00 0.13 3.02 16 3 H 0.06 1.58 7.58 -2.39 -0.02 1.56 16 4 C 0.06 0.99 5.24 86.30 0.45 1.44 16 5 N -0.68 -18.42 5.85 -517.92 -3.03 -21.45 16 6 C 0.06 1.77 6.17 85.56 0.53 2.30 16 7 C 0.45 19.69 7.82 87.66 0.69 20.38 16 8 O -0.62 -33.91 15.78 -3.07 -0.05 -33.96 16 9 N -0.59 -27.41 5.09 -306.99 -1.56 -28.97 16 10 C -0.33 -19.18 10.16 84.04 0.85 -18.32 16 11 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 12 C -0.02 -0.99 5.50 84.93 0.47 -0.52 16 13 N -0.94 -56.54 13.96 21.66 0.30 -56.24 16 14 Si 0.97 38.33 27.74 68.60 1.90 40.24 16 15 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 16 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 17 H -0.23 -7.50 6.52 99.48 0.65 -6.85 16 18 N -0.70 -15.48 4.80 -442.53 -2.13 -17.60 16 19 C 0.51 13.49 7.79 87.66 0.68 14.17 16 20 O -0.59 -19.28 15.64 -3.03 -0.05 -19.32 16 21 C -0.12 -2.80 5.66 29.85 0.17 -2.63 16 22 C -0.01 -0.34 5.08 29.85 0.15 -0.19 16 23 C 0.06 1.48 6.49 43.10 0.28 1.76 16 24 C -0.29 -6.11 10.72 21.99 0.24 -5.88 16 25 C 0.06 0.98 11.49 83.54 0.96 1.94 16 26 N -0.38 -6.97 4.01 -369.55 -1.48 -8.45 16 27 C 0.09 0.80 11.47 127.77 1.47 2.27 16 28 N -0.33 -8.12 12.54 -47.38 -0.59 -8.71 16 29 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 1.03 8.14 -2.38 -0.02 1.02 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.34 10.72 8.43 -89.70 -0.76 9.96 16 35 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.39 14.77 5.76 -92.71 -0.53 14.23 16 38 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 39 H 0.41 8.01 8.60 -92.71 -0.80 7.21 16 40 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 41 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.08 2.06 8.08 -2.38 -0.02 2.04 16 43 H 0.08 1.93 8.10 -2.38 -0.02 1.91 16 44 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 45 H 0.21 1.42 8.06 -2.91 -0.02 1.40 16 46 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 48 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -87.68 408.11 -0.10 -87.78 By element: Atomic # 1 Polarization: 49.85 SS G_CDS: -1.15 Total: 48.69 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: 7.74 Total: 18.00 kcal Atomic # 7 Polarization: -132.93 SS G_CDS: -8.49 Total: -141.42 kcal Atomic # 8 Polarization: -53.19 SS G_CDS: -0.10 Total: -53.28 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 1.90 Total: 40.24 kcal Total: -87.68 -0.10 -87.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754227914.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.544 kcal (2) G-P(sol) polarization free energy of solvation -87.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds