Wall clock time and date at job start Tue Mar 31 2020 20:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47311 * 2 1 4 4 C 1.52994 * 109.47384 * 120.00601 * 2 1 3 5 5 N 1.46905 * 109.47416 * 174.99831 * 4 2 1 6 6 C 1.46897 * 111.00223 * 179.97438 * 5 4 2 7 7 C 1.50705 * 109.47193 * 179.97438 * 6 5 4 8 8 O 1.21287 * 119.99605 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99966 * 180.02562 * 7 6 5 10 10 C 1.37099 * 119.99872 * 180.02562 * 9 7 6 11 11 H 1.08002 * 119.99829 * 359.97438 * 10 9 7 12 12 C 1.38951 * 119.99845 * 180.02562 * 10 9 7 13 13 N 1.31412 * 119.99866 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99761 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47443 * 359.97438 * 14 12 10 16 16 H 1.48507 * 109.47253 * 119.99647 * 14 12 10 17 17 H 1.48500 * 109.47082 * 239.99519 * 14 12 10 18 18 N 1.46505 * 109.47044 * 240.00375 * 2 1 3 19 19 C 1.34777 * 120.00115 * 84.99797 * 18 2 1 20 20 O 1.21282 * 119.99620 * 359.97438 * 19 18 2 21 21 C 1.50697 * 120.00369 * 180.02562 * 19 18 2 22 22 C 1.52997 * 109.47466 * 180.02562 * 21 19 18 23 23 C 1.50701 * 109.47212 * 179.97438 * 22 21 19 24 24 C 1.35320 * 126.12567 * 84.68919 * 23 22 21 25 25 C 1.39869 * 107.91823 * 179.90311 * 24 23 22 26 26 N 1.30836 * 108.20532 * 0.36581 * 25 24 23 27 27 N 1.34949 * 126.12770 * 264.99944 * 23 22 21 28 28 C 1.46496 * 126.03563 * 359.94595 * 27 23 22 29 29 H 1.09006 * 109.47005 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46969 * 299.98950 * 1 2 3 31 31 H 1.09000 * 109.47256 * 59.99845 * 1 2 3 32 32 H 1.09005 * 109.47041 * 294.99674 * 4 2 1 33 33 H 1.09005 * 109.47662 * 54.99693 * 4 2 1 34 34 H 1.00901 * 110.99524 * 303.95606 * 5 4 2 35 35 H 1.08997 * 109.47454 * 300.00140 * 6 5 4 36 36 H 1.09006 * 109.46839 * 59.99995 * 6 5 4 37 37 H 0.97003 * 120.00323 * 359.97438 * 9 7 6 38 38 H 0.97008 * 119.99679 * 180.02562 * 13 12 10 39 39 H 0.97003 * 120.00244 * 264.99827 * 18 2 1 40 40 H 1.09002 * 109.47120 * 59.99760 * 21 19 18 41 41 H 1.08998 * 109.46862 * 300.00562 * 21 19 18 42 42 H 1.09002 * 109.47153 * 59.99773 * 22 21 19 43 43 H 1.09001 * 109.46832 * 299.99964 * 22 21 19 44 44 H 1.08004 * 126.03532 * 0.03520 * 24 23 22 45 45 H 1.07998 * 125.89362 * 180.14155 * 25 24 23 46 46 H 1.08994 * 109.47463 * 89.99820 * 28 27 23 47 47 H 1.09002 * 109.47103 * 209.99935 * 28 27 23 48 48 H 1.09004 * 109.47209 * 329.99441 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5041 -0.8268 1.1902 6 6 4.0305 -1.5151 2.3764 7 6 5.5318 -1.6047 2.2804 8 8 6.1066 -1.1404 1.3186 9 7 6.2356 -2.2007 3.2631 10 6 7.6014 -2.2817 3.1760 11 1 8.1133 -1.8683 2.3195 12 6 8.3269 -2.8967 4.1889 13 7 7.7039 -3.4002 5.2307 14 14 10.1878 -3.0065 4.0705 15 1 10.6421 -2.3681 2.8090 16 1 10.7998 -2.3062 5.2283 17 1 10.6012 -4.4328 4.0798 18 7 2.0183 -0.6906 -1.1963 19 6 2.1470 -0.0182 -2.3572 20 8 1.8581 1.1585 -2.4117 21 6 2.6487 -0.7286 -3.5879 22 6 2.7009 0.2548 -4.7588 23 6 3.2032 -0.4556 -5.9893 24 6 2.4552 -1.1798 -6.8537 25 6 3.3032 -1.6650 -7.8547 26 7 4.5180 -1.2536 -7.5961 27 7 4.4806 -0.4882 -6.4234 28 6 5.6257 0.1623 -5.7819 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 1.7517 -0.1584 2.1369 33 1 1.6054 -1.7199 1.2950 34 1 3.7995 -1.2884 0.3430 35 1 3.7560 -0.9574 3.2718 36 1 3.6096 -2.5191 2.4305 37 1 5.7758 -2.5717 4.0325 38 1 8.2105 -3.8292 5.9381 39 1 2.2490 -1.6317 -1.1528 40 1 1.9758 -1.5504 -3.8327 41 1 3.6478 -1.1212 -3.3987 42 1 3.3740 1.0763 -4.5137 43 1 1.7019 0.6477 -4.9480 44 1 1.3911 -1.3509 -6.7841 45 1 3.0069 -2.2768 -8.6938 46 1 6.0778 -0.5226 -5.0646 47 1 6.3614 0.4327 -6.5394 48 1 5.2901 1.0610 -5.2643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754269108.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:43 Heat of formation + Delta-G solvation = -3.599847 kcal Electronic energy + Delta-G solvation = -28288.914656 eV Core-core repulsion = 24187.286093 eV Total energy + Delta-G solvation = -4101.628563 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.47260 -40.01679 -38.37521 -36.87785 -34.42536 -34.25391 -33.68802 -33.19528 -31.40214 -31.19507 -29.34773 -27.65697 -26.93232 -25.28559 -24.84770 -23.30053 -21.45337 -21.32122 -20.54066 -19.83776 -19.30742 -17.97284 -17.62744 -16.69974 -16.48953 -16.03556 -15.84022 -15.60054 -15.35163 -14.78103 -14.55907 -14.54177 -14.14194 -14.01791 -13.92730 -13.65166 -13.42730 -13.13473 -13.05880 -12.77767 -12.64126 -12.53627 -12.45438 -12.27499 -11.99555 -11.77723 -11.66222 -11.52115 -11.44659 -11.12549 -11.02803 -10.82019 -10.38010 -10.27019 -10.01388 -9.56748 -9.47885 -9.23719 -8.73696 -8.53174 -8.15175 -8.01143 -6.46456 -3.87373 1.62155 2.30382 2.51663 2.60518 3.02719 3.12932 3.23964 3.30936 3.84840 3.99381 4.20260 4.26951 4.36118 4.60492 4.63823 4.72820 4.89168 4.94216 4.95809 4.99494 5.12835 5.16367 5.21362 5.22368 5.25330 5.27335 5.37979 5.50956 5.51900 5.53783 5.57284 5.71000 5.71575 5.87799 5.91490 5.96619 6.02398 6.20237 6.36487 6.43646 6.77609 7.08463 7.32323 7.50108 7.50916 7.53359 8.01443 8.08524 8.55922 9.13144 9.49051 10.00087 10.71244 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009375 B = 0.002315 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2986.019628 B =12090.514821 C =14594.200461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.098 0.902 4 C 0.050 3.950 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.439 3.561 8 O -0.584 6.584 9 N -0.563 5.563 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.281 1.281 18 N -0.723 5.723 19 C 0.520 3.480 20 O -0.541 6.541 21 C -0.136 4.136 22 C -0.041 4.041 23 C 0.088 3.912 24 C -0.274 4.274 25 C 0.044 3.956 26 N -0.300 5.300 27 N -0.369 5.369 28 C 0.094 3.906 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.032 0.968 34 H 0.347 0.653 35 H 0.087 0.913 36 H 0.043 0.957 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.398 0.602 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.098 0.902 44 H 0.146 0.854 45 H 0.182 0.818 46 H 0.079 0.921 47 H 0.089 0.911 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.697 2.516 -16.169 22.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.116 0.884 4 C -0.080 4.080 5 N -0.300 5.300 6 C -0.083 4.083 7 C 0.225 3.775 8 O -0.468 6.468 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.542 5.542 14 Si 0.757 3.243 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.207 1.207 18 N -0.374 5.374 19 C 0.307 3.693 20 O -0.418 6.418 21 C -0.177 4.177 22 C -0.080 4.080 23 C -0.040 4.040 24 C -0.304 4.304 25 C -0.141 4.141 26 N -0.121 5.121 27 N -0.151 5.151 28 C -0.047 4.047 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.050 0.950 34 H 0.167 0.833 35 H 0.106 0.894 36 H 0.061 0.939 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.232 0.768 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.103 0.897 43 H 0.116 0.884 44 H 0.164 0.836 45 H 0.199 0.801 46 H 0.098 0.902 47 H 0.108 0.892 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.956 4.279 -16.736 22.207 hybrid contribution -0.293 -1.864 0.761 2.034 sum -14.248 2.415 -15.975 21.542 Atomic orbital electron populations 1.22145 0.95023 1.02058 1.02765 1.21039 0.93415 0.98493 0.83129 0.88414 1.22312 0.88819 0.98996 0.97888 1.60009 1.07503 1.57539 1.04941 1.21696 0.95165 0.96958 0.94460 1.19791 0.88057 0.84323 0.85346 1.90521 1.71129 1.51583 1.33545 1.41874 1.07457 1.50781 1.19844 1.19747 0.81483 1.35045 1.06599 0.87880 1.25272 1.00746 0.96741 0.95205 1.69621 1.36651 1.38568 1.09395 0.85799 0.82168 0.77901 0.78478 1.19207 1.20692 1.20749 1.46036 1.67535 1.13958 1.09906 1.20476 0.77175 0.87233 0.84465 1.90707 1.50062 1.15888 1.85102 1.21627 1.03972 0.99601 0.92505 1.19966 1.03454 0.96520 0.88108 1.21094 0.85161 0.99987 0.97781 1.21246 1.01091 1.09117 0.98923 1.23825 0.90401 1.00108 0.99815 1.77387 1.22026 1.12449 1.00257 1.48563 1.06557 1.40130 1.19874 1.21943 0.86838 0.97733 0.98188 0.92561 0.91393 0.91889 0.89459 0.94983 0.83331 0.89438 0.93856 0.77452 0.91885 0.76803 0.88263 0.88550 0.89722 0.88369 0.83591 0.80113 0.90210 0.89192 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.48 37.16 0.35 -1.01 16 2 C 0.14 1.49 2.88 -67.93 -0.20 1.29 16 3 H 0.10 1.27 7.58 -51.93 -0.39 0.88 16 4 C 0.05 0.54 5.30 -3.82 -0.02 0.52 16 5 N -0.67 -9.98 6.12 -115.05 -0.70 -10.68 16 6 C 0.05 0.83 6.17 -4.98 -0.03 0.80 16 7 C 0.44 10.08 7.82 -10.98 -0.09 9.99 16 8 O -0.58 -15.48 15.78 5.55 0.09 -15.39 16 9 N -0.56 -13.96 5.29 -10.96 -0.06 -14.02 16 10 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 11 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.17 13.05 55.50 0.72 -23.45 16 14 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 15 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 18 N -0.72 -6.91 4.36 -53.81 -0.23 -7.15 16 19 C 0.52 5.56 7.79 -10.99 -0.09 5.48 16 20 O -0.54 -7.65 15.65 5.56 0.09 -7.57 16 21 C -0.14 -1.09 5.68 -27.89 -0.16 -1.25 16 22 C -0.04 -0.35 4.79 -27.88 -0.13 -0.49 16 23 C 0.09 0.85 6.19 -82.26 -0.51 0.34 16 24 C -0.27 -2.53 10.72 -40.01 -0.43 -2.96 16 25 C 0.04 0.43 12.03 -17.37 -0.21 0.22 16 26 N -0.30 -3.63 12.58 30.62 0.39 -3.24 16 27 N -0.37 -3.96 4.01 -63.89 -0.26 -4.22 16 28 C 0.09 0.76 11.27 59.84 0.67 1.44 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.35 5.27 7.28 -39.29 -0.29 4.98 16 35 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 38 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 39 H 0.40 3.08 8.15 -40.82 -0.33 2.75 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 0.77 6.90 -51.93 -0.36 0.41 16 43 H 0.10 0.82 8.10 -51.93 -0.42 0.40 16 44 H 0.15 1.03 8.06 -52.48 -0.42 0.60 16 45 H 0.18 1.18 8.06 -52.49 -0.42 0.75 16 46 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.09 0.60 6.97 -51.93 -0.36 0.24 16 LS Contribution 407.02 15.07 6.13 6.13 Total: -1.00 -35.28 407.02 -7.41 -42.69 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -7.48 Total: 14.63 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -1.07 Total: 6.49 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: -0.14 Total: -62.76 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: 0.17 Total: -22.96 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.28 -7.41 -42.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754269108.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.091 kcal (2) G-P(sol) polarization free energy of solvation -35.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds