Wall clock time and date at job start Tue Mar 31 2020 20:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47311 * 2 1 4 4 C 1.52994 * 109.47384 * 120.00601 * 2 1 3 5 5 N 1.46905 * 109.47416 * 174.99831 * 4 2 1 6 6 C 1.46897 * 111.00223 * 179.97438 * 5 4 2 7 7 C 1.50705 * 109.47193 * 179.97438 * 6 5 4 8 8 O 1.21287 * 119.99605 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99966 * 180.02562 * 7 6 5 10 10 C 1.37099 * 119.99872 * 180.02562 * 9 7 6 11 11 H 1.08002 * 119.99829 * 359.97438 * 10 9 7 12 12 C 1.38951 * 119.99845 * 180.02562 * 10 9 7 13 13 N 1.31412 * 119.99866 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99761 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47443 * 359.97438 * 14 12 10 16 16 H 1.48507 * 109.47253 * 119.99647 * 14 12 10 17 17 H 1.48500 * 109.47082 * 239.99519 * 14 12 10 18 18 N 1.46505 * 109.47044 * 240.00375 * 2 1 3 19 19 C 1.34777 * 120.00115 * 84.99797 * 18 2 1 20 20 O 1.21282 * 119.99620 * 359.97438 * 19 18 2 21 21 C 1.50697 * 120.00369 * 180.02562 * 19 18 2 22 22 C 1.52997 * 109.47466 * 180.02562 * 21 19 18 23 23 C 1.50701 * 109.47212 * 179.97438 * 22 21 19 24 24 C 1.35320 * 126.12567 * 84.68919 * 23 22 21 25 25 C 1.39869 * 107.91823 * 179.90311 * 24 23 22 26 26 N 1.30836 * 108.20532 * 0.36581 * 25 24 23 27 27 N 1.34949 * 126.12770 * 264.99944 * 23 22 21 28 28 C 1.46496 * 126.03563 * 359.94595 * 27 23 22 29 29 H 1.09006 * 109.47005 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46969 * 299.98950 * 1 2 3 31 31 H 1.09000 * 109.47256 * 59.99845 * 1 2 3 32 32 H 1.09005 * 109.47041 * 294.99674 * 4 2 1 33 33 H 1.09005 * 109.47662 * 54.99693 * 4 2 1 34 34 H 1.00901 * 110.99524 * 303.95606 * 5 4 2 35 35 H 1.08997 * 109.47454 * 300.00140 * 6 5 4 36 36 H 1.09006 * 109.46839 * 59.99995 * 6 5 4 37 37 H 0.97003 * 120.00323 * 359.97438 * 9 7 6 38 38 H 0.97008 * 119.99679 * 180.02562 * 13 12 10 39 39 H 0.97003 * 120.00244 * 264.99827 * 18 2 1 40 40 H 1.09002 * 109.47120 * 59.99760 * 21 19 18 41 41 H 1.08998 * 109.46862 * 300.00562 * 21 19 18 42 42 H 1.09002 * 109.47153 * 59.99773 * 22 21 19 43 43 H 1.09001 * 109.46832 * 299.99964 * 22 21 19 44 44 H 1.08004 * 126.03532 * 0.03520 * 24 23 22 45 45 H 1.07998 * 125.89362 * 180.14155 * 25 24 23 46 46 H 1.08994 * 109.47463 * 89.99820 * 28 27 23 47 47 H 1.09002 * 109.47103 * 209.99935 * 28 27 23 48 48 H 1.09004 * 109.47209 * 329.99441 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5041 -0.8268 1.1902 6 6 4.0305 -1.5151 2.3764 7 6 5.5318 -1.6047 2.2804 8 8 6.1066 -1.1404 1.3186 9 7 6.2356 -2.2007 3.2631 10 6 7.6014 -2.2817 3.1760 11 1 8.1133 -1.8683 2.3195 12 6 8.3269 -2.8967 4.1889 13 7 7.7039 -3.4002 5.2307 14 14 10.1878 -3.0065 4.0705 15 1 10.6421 -2.3681 2.8090 16 1 10.7998 -2.3062 5.2283 17 1 10.6012 -4.4328 4.0798 18 7 2.0183 -0.6906 -1.1963 19 6 2.1470 -0.0182 -2.3572 20 8 1.8581 1.1585 -2.4117 21 6 2.6487 -0.7286 -3.5879 22 6 2.7009 0.2548 -4.7588 23 6 3.2032 -0.4556 -5.9893 24 6 2.4552 -1.1798 -6.8537 25 6 3.3032 -1.6650 -7.8547 26 7 4.5180 -1.2536 -7.5961 27 7 4.4806 -0.4882 -6.4234 28 6 5.6257 0.1623 -5.7819 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 1.7517 -0.1584 2.1369 33 1 1.6054 -1.7199 1.2950 34 1 3.7995 -1.2884 0.3430 35 1 3.7560 -0.9574 3.2718 36 1 3.6096 -2.5191 2.4305 37 1 5.7758 -2.5717 4.0325 38 1 8.2105 -3.8292 5.9381 39 1 2.2490 -1.6317 -1.1528 40 1 1.9758 -1.5504 -3.8327 41 1 3.6478 -1.1212 -3.3987 42 1 3.3740 1.0763 -4.5137 43 1 1.7019 0.6477 -4.9480 44 1 1.3911 -1.3509 -6.7841 45 1 3.0069 -2.2768 -8.6938 46 1 6.0778 -0.5226 -5.0646 47 1 6.3614 0.4327 -6.5394 48 1 5.2901 1.0610 -5.2643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754269108.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:43 Heat of formation + Delta-G solvation = -30.790178 kcal Electronic energy + Delta-G solvation = -28290.093717 eV Core-core repulsion = 24187.286093 eV Total energy + Delta-G solvation = -4102.807624 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.20225 -40.89085 -40.12365 -37.92627 -36.03921 -35.14663 -35.01219 -33.90249 -33.26254 -32.17354 -30.09242 -28.96697 -27.60929 -26.72567 -25.80325 -24.57997 -22.26425 -22.06294 -21.38236 -21.07015 -20.54394 -19.91593 -18.51380 -17.86976 -17.38302 -17.15881 -16.88138 -16.56676 -16.42125 -16.25005 -16.00938 -15.43908 -15.41975 -15.14377 -14.86108 -14.79456 -14.32388 -14.22574 -14.03857 -13.73028 -13.54488 -13.39350 -13.25299 -13.21661 -13.07895 -13.02053 -12.99016 -12.79531 -12.61024 -12.40924 -12.14203 -12.12420 -11.91095 -11.56784 -11.52004 -10.89825 -10.36846 -10.24687 -10.05406 -10.01858 -9.46556 -9.32001 -8.47701 -5.96039 0.88290 1.35750 1.41554 1.55151 1.62361 1.68278 1.89448 2.05009 2.25516 2.28828 2.89657 3.20038 3.48043 3.54518 3.72018 3.87189 3.91887 3.97398 4.17542 4.22259 4.28836 4.33213 4.35312 4.40294 4.50412 4.55678 4.60138 4.61914 4.64532 4.70030 4.77158 4.82524 4.83591 4.89946 5.04478 5.12030 5.28258 5.30935 5.40570 5.57079 5.76178 5.86835 6.08276 6.08747 6.38985 6.55617 6.59601 6.76596 7.12345 7.28578 7.56203 8.11430 8.69786 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009375 B = 0.002315 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2986.019628 B =12090.514821 C =14594.200461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.146 3.854 3 H 0.066 0.934 4 C 0.055 3.945 5 N -0.686 5.686 6 C 0.065 3.935 7 C 0.436 3.564 8 O -0.624 6.624 9 N -0.573 5.573 10 C -0.332 4.332 11 H 0.077 0.923 12 C -0.013 4.013 13 N -0.919 5.919 14 Si 0.991 3.009 15 H -0.274 1.274 16 H -0.272 1.272 17 H -0.270 1.270 18 N -0.716 5.716 19 C 0.517 3.483 20 O -0.580 6.580 21 C -0.126 4.126 22 C -0.034 4.034 23 C 0.082 3.918 24 C -0.278 4.278 25 C 0.040 3.960 26 N -0.340 5.340 27 N -0.381 5.381 28 C 0.089 3.911 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.096 0.904 33 H 0.059 0.941 34 H 0.343 0.657 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.409 0.591 40 H 0.123 0.877 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.101 0.899 44 H 0.168 0.832 45 H 0.209 0.791 46 H 0.080 0.920 47 H 0.094 0.906 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.081 1.363 -15.762 23.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.041 3.959 3 H 0.084 0.916 4 C -0.074 4.074 5 N -0.320 5.320 6 C -0.067 4.067 7 C 0.224 3.776 8 O -0.511 6.511 9 N -0.211 5.211 10 C -0.461 4.461 11 H 0.095 0.905 12 C -0.213 4.213 13 N -0.560 5.560 14 Si 0.815 3.185 15 H -0.199 1.199 16 H -0.197 1.197 17 H -0.196 1.196 18 N -0.368 5.368 19 C 0.305 3.695 20 O -0.460 6.460 21 C -0.167 4.167 22 C -0.073 4.073 23 C -0.046 4.046 24 C -0.307 4.307 25 C -0.144 4.144 26 N -0.162 5.162 27 N -0.164 5.164 28 C -0.052 4.052 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.163 0.837 35 H 0.123 0.877 36 H 0.090 0.910 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.245 0.755 40 H 0.141 0.859 41 H 0.116 0.884 42 H 0.093 0.907 43 H 0.119 0.881 44 H 0.186 0.814 45 H 0.225 0.775 46 H 0.098 0.902 47 H 0.112 0.888 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.367 3.095 -16.301 22.615 hybrid contribution 0.081 -1.475 0.615 1.600 sum -15.286 1.620 -15.686 21.963 Atomic orbital electron populations 1.22055 0.93163 1.03128 1.02685 1.20955 0.94716 0.96865 0.83336 0.91579 1.22368 0.86130 1.00558 0.98299 1.59980 1.10296 1.57573 1.04134 1.21550 0.90134 0.99160 0.95879 1.20946 0.90761 0.82112 0.83814 1.90492 1.72880 1.52751 1.34949 1.41942 1.06847 1.51619 1.20651 1.19670 0.83120 1.36706 1.06648 0.90453 1.26012 1.04779 0.95890 0.94579 1.69672 1.38154 1.38532 1.09681 0.84900 0.77077 0.78303 0.78248 1.19866 1.19708 1.19551 1.46009 1.66906 1.14450 1.09453 1.20901 0.76482 0.86808 0.85297 1.90692 1.51923 1.17629 1.85751 1.21582 1.04408 0.99715 0.90974 1.19895 1.03248 0.96252 0.87925 1.21326 0.85055 1.00074 0.98136 1.21586 1.02136 1.08604 0.98414 1.24371 0.89842 0.99696 1.00518 1.77334 1.23549 1.13903 1.01423 1.48780 1.07357 1.40372 1.19876 1.22081 0.86686 0.98081 0.98348 0.90818 0.90240 0.93252 0.88530 0.92322 0.83723 0.87702 0.90974 0.76910 0.91309 0.75508 0.85862 0.88433 0.90693 0.88099 0.81416 0.77488 0.90166 0.88754 0.88098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.48 71.98 0.68 -1.56 16 2 C 0.15 2.81 2.88 44.99 0.13 2.94 16 3 H 0.07 1.72 7.58 -2.39 -0.02 1.70 16 4 C 0.06 1.04 5.30 86.30 0.46 1.50 16 5 N -0.69 -19.40 6.12 -517.91 -3.17 -22.57 16 6 C 0.07 2.03 6.17 85.56 0.53 2.56 16 7 C 0.44 19.95 7.82 87.66 0.69 20.63 16 8 O -0.62 -33.68 15.78 -3.05 -0.05 -33.73 16 9 N -0.57 -28.58 5.29 -306.99 -1.62 -30.20 16 10 C -0.33 -18.54 9.68 84.04 0.81 -17.73 16 11 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 12 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 13 N -0.92 -48.75 13.05 21.66 0.28 -48.46 16 14 Si 0.99 42.41 29.55 68.60 2.03 44.44 16 15 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 16 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 17 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 18 N -0.72 -12.74 4.36 -442.55 -1.93 -14.67 16 19 C 0.52 10.74 7.79 87.66 0.68 11.43 16 20 O -0.58 -16.57 15.65 -3.04 -0.05 -16.62 16 21 C -0.13 -1.89 5.68 29.85 0.17 -1.72 16 22 C -0.03 -0.56 4.79 29.85 0.14 -0.42 16 23 C 0.08 1.53 6.19 41.41 0.26 1.79 16 24 C -0.28 -4.72 10.72 21.99 0.24 -4.49 16 25 C 0.04 0.75 12.03 85.24 1.02 1.77 16 26 N -0.34 -8.17 12.58 -57.03 -0.72 -8.89 16 27 N -0.38 -8.17 4.01 -356.04 -1.43 -9.59 16 28 C 0.09 1.47 11.27 127.77 1.44 2.91 16 29 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.34 10.01 7.28 -89.69 -0.65 9.36 16 35 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 36 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.40 18.68 7.90 -92.71 -0.73 17.95 16 38 H 0.28 13.74 8.31 -92.70 -0.77 12.97 16 39 H 0.41 5.49 8.15 -92.71 -0.76 4.74 16 40 H 0.12 1.25 8.14 -2.39 -0.02 1.24 16 41 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.07 1.38 6.90 -2.39 -0.02 1.37 16 43 H 0.10 1.62 8.10 -2.39 -0.02 1.60 16 44 H 0.17 1.97 8.06 -2.91 -0.02 1.94 16 45 H 0.21 2.35 8.06 -2.91 -0.02 2.33 16 46 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.10 1.39 6.97 -2.39 -0.02 1.37 16 Total: -1.00 -77.56 407.02 -0.08 -77.64 By element: Atomic # 1 Polarization: 44.38 SS G_CDS: -1.14 Total: 43.24 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: 7.72 Total: 19.42 kcal Atomic # 7 Polarization: -125.81 SS G_CDS: -8.58 Total: -134.39 kcal Atomic # 8 Polarization: -50.25 SS G_CDS: -0.10 Total: -50.35 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -77.56 -0.08 -77.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754269108.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.845 kcal (2) G-P(sol) polarization free energy of solvation -77.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds