Wall clock time and date at job start Tue Mar 31 2020 20:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47293 * 2 1 4 4 N 1.46498 * 109.47147 * 120.00179 * 2 1 3 5 5 C 1.35851 * 126.13415 * 299.99532 * 4 2 1 6 6 N 1.30175 * 109.00194 * 179.75948 * 5 4 2 7 7 C 1.35755 * 108.86589 * 0.38754 * 6 5 4 8 8 C 1.47332 * 126.23133 * 179.87789 * 7 6 5 9 9 O 1.21624 * 119.99569 * 179.68633 * 8 7 6 10 10 N 1.34770 * 120.00176 * 359.69361 * 8 7 6 11 11 C 1.46500 * 119.99955 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47175 * 324.99716 * 11 10 8 13 13 C 1.53006 * 109.46998 * 84.99585 * 11 10 8 14 14 C 1.52997 * 109.47204 * 204.99611 * 11 10 8 15 15 N 1.46898 * 109.47005 * 54.99937 * 14 11 10 16 16 C 1.46906 * 111.00196 * 180.02562 * 15 14 11 17 17 C 1.50694 * 109.47162 * 180.02562 * 16 15 14 18 18 O 1.21291 * 120.00435 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99947 * 179.97438 * 17 16 15 20 20 C 1.37099 * 120.00221 * 179.97438 * 19 17 16 21 21 H 1.07996 * 120.00142 * 359.97438 * 20 19 17 22 22 C 1.38947 * 120.00187 * 180.02562 * 20 19 17 23 23 N 1.31405 * 120.00254 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 120.00060 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47392 * 89.99966 * 24 22 20 26 26 H 1.48495 * 109.47131 * 210.00400 * 24 22 20 27 27 H 1.48506 * 109.47005 * 329.99963 * 24 22 20 28 28 C 1.35378 * 126.13676 * 120.00049 * 4 2 1 29 29 H 1.09005 * 109.46662 * 299.99967 * 1 2 3 30 30 H 1.09002 * 109.46790 * 59.99758 * 1 2 3 31 31 H 1.08997 * 109.46970 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47279 * 240.00048 * 2 1 3 33 33 H 1.09002 * 109.47136 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47113 * 299.99723 * 3 2 1 35 35 H 1.08995 * 109.47262 * 60.00238 * 3 2 1 36 36 H 1.07998 * 125.49995 * 0.02713 * 5 4 2 37 37 H 0.96997 * 119.99935 * 359.97438 * 10 8 7 38 38 H 1.09001 * 109.47002 * 179.97438 * 13 11 10 39 39 H 1.08993 * 109.46955 * 300.00226 * 13 11 10 40 40 H 1.09000 * 109.47050 * 60.00054 * 13 11 10 41 41 H 1.09002 * 109.47223 * 175.00155 * 14 11 10 42 42 H 1.09006 * 109.47396 * 295.00365 * 14 11 10 43 43 H 1.00899 * 111.00245 * 56.04645 * 15 14 11 44 44 H 1.09004 * 109.46366 * 299.99807 * 16 15 14 45 45 H 1.08992 * 109.47344 * 59.99206 * 16 15 14 46 46 H 0.96999 * 120.00024 * 359.97438 * 19 17 16 47 47 H 0.97006 * 120.00440 * 179.97438 * 23 22 20 48 48 H 1.07992 * 126.56528 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7682 -0.3368 2.4837 6 7 2.3594 -1.1819 3.2780 7 6 3.0169 -2.1029 2.5281 8 6 3.8144 -3.2320 3.0377 9 8 4.3535 -3.9958 2.2597 10 7 3.9464 -3.4187 4.3659 11 6 4.7389 -4.5418 4.8726 12 1 4.6216 -5.3981 4.2086 13 6 6.2141 -4.1398 4.9306 14 6 4.2563 -4.9145 6.2758 15 7 2.8128 -5.1846 6.2414 16 6 2.3129 -5.5461 7.5747 17 6 0.8322 -5.8159 7.4998 18 8 0.2504 -5.7164 6.4403 19 7 0.1544 -6.1678 8.6103 20 6 -1.1928 -6.4128 8.5424 21 1 -1.7111 -6.3234 7.5991 22 6 -1.8917 -6.7751 9.6874 23 7 -3.1831 -7.0094 9.6224 24 14 -0.9956 -6.9290 11.3192 25 1 -1.0165 -5.6205 12.0208 26 1 -1.6689 -7.9519 12.1591 27 1 0.4112 -7.3372 11.0747 28 6 2.7998 -1.7959 1.2167 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.1713 0.5067 2.7976 37 1 3.5167 -2.8094 4.9863 38 1 6.8038 -4.9753 5.3081 39 1 6.5579 -3.8742 3.9310 40 1 6.3315 -3.2834 5.5947 41 1 4.7846 -5.8048 6.6172 42 1 4.4553 -4.0893 6.9597 43 1 2.5952 -5.9024 5.5665 44 1 2.8276 -6.4407 7.9253 45 1 2.4985 -4.7252 8.2672 46 1 0.6197 -6.2478 9.4577 47 1 -3.6710 -7.2627 10.4217 48 1 3.1786 -2.3321 0.3592 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754276663.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:29 Heat of formation + Delta-G solvation = -11.650656 kcal Electronic energy + Delta-G solvation = -28546.706250 eV Core-core repulsion = 24444.728578 eV Total energy + Delta-G solvation = -4101.977672 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.36465 -39.40454 -38.39649 -36.63249 -36.26004 -34.23120 -33.61800 -31.66871 -31.56068 -30.81920 -29.41455 -27.88478 -27.67328 -25.02585 -23.88038 -23.35643 -22.92447 -20.96204 -20.69462 -19.83558 -19.31284 -18.30690 -17.75180 -16.64139 -16.49465 -15.82549 -15.75121 -15.31217 -14.90189 -14.85265 -14.72373 -14.36493 -14.11469 -14.07153 -13.95445 -13.64935 -13.40183 -13.23795 -13.12761 -12.85208 -12.73380 -12.60921 -12.37821 -12.17057 -11.98403 -11.95427 -11.78029 -11.64325 -11.60526 -11.12009 -10.87393 -10.56170 -10.32437 -9.93614 -9.93333 -9.88855 -9.52629 -8.94066 -8.62594 -8.52458 -8.14446 -8.07944 -6.26875 -3.77971 1.55862 2.35092 2.39478 3.05550 3.09969 3.17688 3.39854 3.69462 3.80237 3.99897 4.11562 4.15107 4.31553 4.35650 4.43129 4.53834 4.82558 4.91314 4.93672 5.02364 5.08757 5.13779 5.16341 5.20134 5.25443 5.34794 5.38129 5.46105 5.47556 5.58393 5.63141 5.67504 5.68996 5.86119 5.93730 5.98511 5.98799 6.13676 6.35491 6.68231 6.86997 7.13254 7.60799 7.61328 7.63561 7.92024 8.19506 8.46823 8.64836 8.99918 9.47282 9.88648 10.86434 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011140 B = 0.002390 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.812902 B =11710.707081 C =13673.211610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.125 3.875 3 C -0.163 4.163 4 N -0.453 5.453 5 C 0.186 3.814 6 N -0.456 5.456 7 C -0.058 4.058 8 C 0.607 3.393 9 O -0.558 6.558 10 N -0.692 5.692 11 C 0.145 3.855 12 H 0.086 0.914 13 C -0.160 4.160 14 C 0.049 3.951 15 N -0.665 5.665 16 C 0.049 3.951 17 C 0.451 3.549 18 O -0.562 6.562 19 N -0.593 5.593 20 C -0.303 4.303 21 H 0.119 0.881 22 C 0.040 3.960 23 N -0.883 5.883 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.030 3.970 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.207 0.793 37 H 0.414 0.586 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.043 0.957 42 H 0.077 0.923 43 H 0.352 0.648 44 H 0.044 0.956 45 H 0.087 0.913 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.208 15.913 -15.418 27.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.023 3.977 3 C -0.221 4.221 4 N -0.136 5.136 5 C -0.097 4.097 6 N -0.174 5.174 7 C -0.187 4.187 8 C 0.393 3.607 9 O -0.437 6.437 10 N -0.342 5.342 11 C 0.040 3.960 12 H 0.104 0.896 13 C -0.219 4.219 14 C -0.081 4.081 15 N -0.298 5.298 16 C -0.084 4.084 17 C 0.236 3.764 18 O -0.443 6.443 19 N -0.232 5.232 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.163 4.163 23 N -0.523 5.523 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.203 1.203 27 H -0.195 1.195 28 C -0.109 4.109 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.121 0.879 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.223 0.777 37 H 0.250 0.750 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.096 0.904 43 H 0.172 0.828 44 H 0.062 0.938 45 H 0.106 0.894 46 H 0.203 0.797 47 H 0.083 0.917 48 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 15.744 16.094 -15.731 27.465 hybrid contribution 0.526 -0.770 1.024 1.385 sum 16.270 15.324 -14.707 26.755 Atomic orbital electron populations 1.22203 0.92719 1.03768 1.03647 1.21562 0.95887 0.94096 0.86179 1.22186 1.02232 0.94048 1.03651 1.45647 1.37741 1.21952 1.08234 1.25015 1.04051 1.02019 0.78634 1.70659 1.10497 1.03771 1.32480 1.20561 1.07353 1.00394 0.90435 1.16861 0.78886 0.82524 0.82434 1.90759 1.49651 1.46389 1.56886 1.45594 1.51805 1.30261 1.06557 1.20942 0.90196 0.90110 0.94795 0.89553 1.22140 0.95370 1.01788 1.02622 1.22311 0.88986 1.00678 0.96130 1.60016 1.11803 1.50907 1.07072 1.21706 0.94919 0.99907 0.91891 1.19727 0.88077 0.83633 0.84916 1.90581 1.69691 1.55121 1.28897 1.42205 1.09515 1.62938 1.08580 1.19428 0.81510 1.43457 0.98770 0.86342 1.25036 0.95541 0.97624 0.98063 1.69622 1.06722 1.46289 1.29705 0.86662 0.79560 0.78888 0.84204 1.19620 1.20255 1.19546 1.22548 0.97892 0.90782 0.99669 0.91297 0.90248 0.91338 0.87941 0.91625 0.90252 0.91367 0.77691 0.75007 0.91687 0.91862 0.92323 0.93921 0.90412 0.82846 0.93806 0.89439 0.79733 0.91679 0.79836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 9.24 37.16 0.34 -0.42 16 2 C 0.13 0.63 3.57 -67.93 -0.24 0.39 16 3 C -0.16 -0.59 9.24 37.16 0.34 -0.24 16 4 N -0.45 -3.96 2.59 -111.25 -0.29 -4.25 16 5 C 0.19 1.90 11.53 -89.90 -1.04 0.87 16 6 N -0.46 -6.31 11.01 -11.03 -0.12 -6.44 16 7 C -0.06 -0.83 6.98 -83.09 -0.58 -1.41 16 8 C 0.61 9.46 7.78 -12.56 -0.10 9.36 16 9 O -0.56 -9.78 16.54 5.26 0.09 -9.69 16 10 N -0.69 -9.72 4.80 -54.91 -0.26 -9.98 16 11 C 0.14 1.78 2.81 -67.93 -0.19 1.59 16 12 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 13 C -0.16 -1.62 9.48 37.16 0.35 -1.27 16 14 C 0.05 0.58 5.24 -3.83 -0.02 0.56 16 15 N -0.67 -10.67 5.85 -115.06 -0.67 -11.34 16 16 C 0.05 0.82 6.17 -4.98 -0.03 0.79 16 17 C 0.45 10.53 7.82 -10.99 -0.09 10.44 16 18 O -0.56 -15.63 15.78 5.55 0.09 -15.54 16 19 N -0.59 -14.44 5.09 -10.97 -0.06 -14.50 16 20 C -0.30 -8.75 10.16 -14.93 -0.15 -8.91 16 21 H 0.12 3.92 7.39 -52.49 -0.39 3.53 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -26.22 13.96 55.50 0.77 -25.44 16 24 Si 0.88 19.69 27.74 -169.99 -4.71 14.97 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 27 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 28 C 0.03 0.34 11.22 -16.64 -0.19 0.15 16 29 H 0.07 0.32 7.94 -51.93 -0.41 -0.09 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.10 0.40 8.07 -51.93 -0.42 -0.02 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.07 0.24 7.94 -51.93 -0.41 -0.17 16 36 H 0.21 1.39 8.06 -52.49 -0.42 0.96 16 37 H 0.41 5.92 8.32 -40.82 -0.34 5.58 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.35 6.14 8.43 -39.29 -0.33 5.81 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.37 7.90 5.76 -40.82 -0.24 7.66 16 47 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.18 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 406.22 15.07 6.12 6.12 Total: -1.00 -37.29 406.22 -8.32 -45.61 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: -7.59 Total: 17.54 kcal Atomic # 6 Polarization: 14.60 SS G_CDS: -1.68 Total: 12.93 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -0.63 Total: -71.95 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: 0.17 Total: -25.23 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.71 Total: 14.97 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -37.29 -8.32 -45.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754276663.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.962 kcal (2) G-P(sol) polarization free energy of solvation -37.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds