Wall clock time and date at job start Tue Mar 31 2020 20:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47293 * 2 1 4 4 N 1.46498 * 109.47147 * 120.00179 * 2 1 3 5 5 C 1.35851 * 126.13415 * 299.99532 * 4 2 1 6 6 N 1.30175 * 109.00194 * 179.75948 * 5 4 2 7 7 C 1.35755 * 108.86589 * 0.38754 * 6 5 4 8 8 C 1.47332 * 126.23133 * 179.87789 * 7 6 5 9 9 O 1.21624 * 119.99569 * 179.68633 * 8 7 6 10 10 N 1.34770 * 120.00176 * 359.69361 * 8 7 6 11 11 C 1.46500 * 119.99955 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47175 * 324.99716 * 11 10 8 13 13 C 1.53006 * 109.46998 * 84.99585 * 11 10 8 14 14 C 1.52997 * 109.47204 * 204.99611 * 11 10 8 15 15 N 1.46898 * 109.47005 * 54.99937 * 14 11 10 16 16 C 1.46906 * 111.00196 * 180.02562 * 15 14 11 17 17 C 1.50694 * 109.47162 * 180.02562 * 16 15 14 18 18 O 1.21291 * 120.00435 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99947 * 179.97438 * 17 16 15 20 20 C 1.37099 * 120.00221 * 179.97438 * 19 17 16 21 21 H 1.07996 * 120.00142 * 359.97438 * 20 19 17 22 22 C 1.38947 * 120.00187 * 180.02562 * 20 19 17 23 23 N 1.31405 * 120.00254 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 120.00060 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47392 * 89.99966 * 24 22 20 26 26 H 1.48495 * 109.47131 * 210.00400 * 24 22 20 27 27 H 1.48506 * 109.47005 * 329.99963 * 24 22 20 28 28 C 1.35378 * 126.13676 * 120.00049 * 4 2 1 29 29 H 1.09005 * 109.46662 * 299.99967 * 1 2 3 30 30 H 1.09002 * 109.46790 * 59.99758 * 1 2 3 31 31 H 1.08997 * 109.46970 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47279 * 240.00048 * 2 1 3 33 33 H 1.09002 * 109.47136 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47113 * 299.99723 * 3 2 1 35 35 H 1.08995 * 109.47262 * 60.00238 * 3 2 1 36 36 H 1.07998 * 125.49995 * 0.02713 * 5 4 2 37 37 H 0.96997 * 119.99935 * 359.97438 * 10 8 7 38 38 H 1.09001 * 109.47002 * 179.97438 * 13 11 10 39 39 H 1.08993 * 109.46955 * 300.00226 * 13 11 10 40 40 H 1.09000 * 109.47050 * 60.00054 * 13 11 10 41 41 H 1.09002 * 109.47223 * 175.00155 * 14 11 10 42 42 H 1.09006 * 109.47396 * 295.00365 * 14 11 10 43 43 H 1.00899 * 111.00245 * 56.04645 * 15 14 11 44 44 H 1.09004 * 109.46366 * 299.99807 * 16 15 14 45 45 H 1.08992 * 109.47344 * 59.99206 * 16 15 14 46 46 H 0.96999 * 120.00024 * 359.97438 * 19 17 16 47 47 H 0.97006 * 120.00440 * 179.97438 * 23 22 20 48 48 H 1.07992 * 126.56528 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7682 -0.3368 2.4837 6 7 2.3594 -1.1819 3.2780 7 6 3.0169 -2.1029 2.5281 8 6 3.8144 -3.2320 3.0377 9 8 4.3535 -3.9958 2.2597 10 7 3.9464 -3.4187 4.3659 11 6 4.7389 -4.5418 4.8726 12 1 4.6216 -5.3981 4.2086 13 6 6.2141 -4.1398 4.9306 14 6 4.2563 -4.9145 6.2758 15 7 2.8128 -5.1846 6.2414 16 6 2.3129 -5.5461 7.5747 17 6 0.8322 -5.8159 7.4998 18 8 0.2504 -5.7164 6.4403 19 7 0.1544 -6.1678 8.6103 20 6 -1.1928 -6.4128 8.5424 21 1 -1.7111 -6.3234 7.5991 22 6 -1.8917 -6.7751 9.6874 23 7 -3.1831 -7.0094 9.6224 24 14 -0.9956 -6.9290 11.3192 25 1 -1.0165 -5.6205 12.0208 26 1 -1.6689 -7.9519 12.1591 27 1 0.4112 -7.3372 11.0747 28 6 2.7998 -1.7959 1.2167 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.1713 0.5067 2.7976 37 1 3.5167 -2.8094 4.9863 38 1 6.8038 -4.9753 5.3081 39 1 6.5579 -3.8742 3.9310 40 1 6.3315 -3.2834 5.5947 41 1 4.7846 -5.8048 6.6172 42 1 4.4553 -4.0893 6.9597 43 1 2.5952 -5.9024 5.5665 44 1 2.8276 -6.4407 7.9253 45 1 2.4985 -4.7252 8.2672 46 1 0.6197 -6.2478 9.4577 47 1 -3.6710 -7.2627 10.4217 48 1 3.1786 -2.3321 0.3592 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754276663.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:28 Heat of formation + Delta-G solvation = -41.215139 kcal Electronic energy + Delta-G solvation = -28547.988262 eV Core-core repulsion = 24444.728578 eV Total energy + Delta-G solvation = -4103.259684 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.19108 -40.56205 -40.19979 -37.76194 -36.90646 -36.06053 -35.09746 -33.73861 -32.44812 -31.75501 -30.29900 -29.07453 -28.20964 -26.64058 -24.99824 -24.22312 -24.00798 -21.94815 -21.48174 -21.25403 -20.82991 -20.24663 -18.53348 -17.90063 -17.52782 -17.29185 -16.76150 -16.61045 -16.44594 -15.89159 -15.60026 -15.52664 -15.19149 -15.13541 -14.94470 -14.80073 -14.68522 -14.53326 -14.26891 -14.05092 -13.92045 -13.34648 -13.18511 -13.12827 -13.11259 -12.98760 -12.79410 -12.69328 -12.40957 -12.38856 -12.17073 -11.97577 -11.83003 -11.51077 -11.28171 -10.99284 -10.73036 -10.44448 -10.24519 -10.02600 -9.54276 -9.31014 -8.41014 -6.02082 0.61660 1.30555 1.36629 1.45278 1.47898 1.67965 1.97012 2.23697 2.38852 2.62516 2.73474 3.15245 3.39227 3.49516 3.59254 3.83102 3.84496 3.93452 4.10123 4.13585 4.20190 4.25253 4.39136 4.45851 4.48155 4.58297 4.64762 4.66707 4.67108 4.77500 4.81606 4.82772 4.84912 5.04525 5.07349 5.23784 5.25394 5.29585 5.49905 5.52976 5.62823 5.90309 6.05106 6.13708 6.32089 6.59465 6.60559 6.88704 6.93084 7.34186 7.40291 7.98110 8.76901 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011140 B = 0.002390 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.812902 B =11710.707081 C =13673.211610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.120 3.880 3 C -0.158 4.158 4 N -0.443 5.443 5 C 0.191 3.809 6 N -0.494 5.494 7 C -0.098 4.098 8 C 0.598 3.402 9 O -0.589 6.589 10 N -0.690 5.690 11 C 0.142 3.858 12 H 0.065 0.935 13 C -0.150 4.150 14 C 0.057 3.943 15 N -0.686 5.686 16 C 0.064 3.936 17 C 0.447 3.553 18 O -0.616 6.616 19 N -0.591 5.591 20 C -0.329 4.329 21 H 0.052 0.948 22 C -0.017 4.017 23 N -0.936 5.936 24 Si 0.968 3.032 25 H -0.256 1.256 26 H -0.275 1.275 27 H -0.230 1.230 28 C 0.037 3.963 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.047 0.953 32 H 0.116 0.884 33 H 0.056 0.944 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.238 0.762 37 H 0.412 0.588 38 H 0.087 0.913 39 H 0.044 0.956 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.339 0.661 44 H 0.080 0.920 45 H 0.119 0.881 46 H 0.390 0.610 47 H 0.279 0.721 48 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.764 17.202 -13.679 28.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.019 3.981 3 C -0.216 4.216 4 N -0.124 5.124 5 C -0.093 4.093 6 N -0.213 5.213 7 C -0.227 4.227 8 C 0.385 3.615 9 O -0.471 6.471 10 N -0.338 5.338 11 C 0.037 3.963 12 H 0.083 0.917 13 C -0.209 4.209 14 C -0.072 4.072 15 N -0.318 5.318 16 C -0.068 4.068 17 C 0.235 3.765 18 O -0.501 6.501 19 N -0.233 5.233 20 C -0.458 4.458 21 H 0.070 0.930 22 C -0.216 4.216 23 N -0.576 5.576 24 Si 0.787 3.213 25 H -0.180 1.180 26 H -0.200 1.200 27 H -0.153 1.153 28 C -0.105 4.105 29 H 0.087 0.913 30 H 0.121 0.879 31 H 0.067 0.933 32 H 0.134 0.866 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.254 0.746 37 H 0.248 0.752 38 H 0.106 0.894 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.115 0.885 43 H 0.157 0.843 44 H 0.097 0.903 45 H 0.137 0.863 46 H 0.226 0.774 47 H 0.089 0.911 48 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 18.331 17.410 -13.988 28.892 hybrid contribution -0.381 -1.101 0.302 1.204 sum 17.950 16.308 -13.686 27.847 Atomic orbital electron populations 1.22207 0.92198 1.02798 1.04867 1.21920 0.96213 0.94917 0.85040 1.22170 1.01656 0.92864 1.04865 1.45898 1.36452 1.21026 1.09066 1.25610 1.03011 1.01810 0.78898 1.70573 1.11927 1.04830 1.33980 1.20605 1.09134 1.01143 0.91779 1.17195 0.78797 0.82747 0.82756 1.90715 1.51199 1.47676 1.57547 1.45665 1.51613 1.30427 1.06116 1.21075 0.91501 0.88980 0.94745 0.91668 1.22048 0.93654 1.03136 1.02030 1.22372 0.86510 1.02393 0.95951 1.60010 1.14709 1.50670 1.06443 1.21639 0.89481 1.02635 0.93057 1.21077 0.90843 0.81019 0.83563 1.90561 1.71729 1.56745 1.31037 1.42017 1.07837 1.63412 1.10008 1.18990 0.83891 1.45930 0.97001 0.93024 1.26158 0.96367 0.95965 1.03068 1.69810 1.09183 1.46997 1.31659 0.85329 0.79802 0.79503 0.76642 1.18049 1.20024 1.15330 1.22782 0.97382 0.91153 0.99139 0.91272 0.87876 0.93345 0.86592 0.92454 0.88057 0.91149 0.74615 0.75225 0.89416 0.93643 0.91049 0.91261 0.88483 0.84299 0.90252 0.86340 0.77390 0.91143 0.78495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.24 71.98 0.67 -0.60 16 2 C 0.12 1.01 3.57 44.99 0.16 1.17 16 3 C -0.16 -0.79 9.24 71.98 0.67 -0.12 16 4 N -0.44 -7.50 2.59 -505.88 -1.31 -8.81 16 5 C 0.19 3.82 11.53 180.10 2.08 5.90 16 6 N -0.49 -14.04 11.01 -188.81 -2.08 -16.12 16 7 C -0.10 -2.92 6.98 40.51 0.28 -2.63 16 8 C 0.60 19.59 7.78 86.64 0.67 20.27 16 9 O -0.59 -21.79 16.54 -4.11 -0.07 -21.86 16 10 N -0.69 -19.80 4.80 -445.88 -2.14 -21.94 16 11 C 0.14 3.40 2.81 44.99 0.13 3.53 16 12 H 0.07 1.85 7.58 -2.39 -0.02 1.83 16 13 C -0.15 -2.80 9.48 71.98 0.68 -2.11 16 14 C 0.06 1.19 5.24 86.30 0.45 1.65 16 15 N -0.69 -21.12 5.85 -517.93 -3.03 -24.15 16 16 C 0.06 1.97 6.17 85.55 0.53 2.50 16 17 C 0.45 20.85 7.82 87.66 0.69 21.53 16 18 O -0.62 -35.86 15.78 -3.06 -0.05 -35.91 16 19 N -0.59 -28.50 5.09 -306.99 -1.56 -30.07 16 20 C -0.33 -19.76 10.16 84.04 0.85 -18.90 16 21 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 22 C -0.02 -0.98 5.50 84.93 0.47 -0.51 16 23 N -0.94 -57.41 13.96 21.66 0.30 -57.10 16 24 Si 0.97 39.26 27.74 68.60 1.90 41.17 16 25 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 26 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 27 H -0.23 -7.81 6.52 99.48 0.65 -7.16 16 28 C 0.04 0.84 11.22 83.72 0.94 1.78 16 29 H 0.07 0.54 7.94 -2.38 -0.02 0.52 16 30 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.12 0.70 8.07 -2.39 -0.02 0.68 16 33 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 35 H 0.07 0.34 7.94 -2.39 -0.02 0.32 16 36 H 0.24 2.85 8.06 -2.91 -0.02 2.83 16 37 H 0.41 11.99 8.32 -92.71 -0.77 11.22 16 38 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 42 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 43 H 0.34 11.90 8.43 -89.69 -0.76 11.15 16 44 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 46 H 0.39 15.43 5.76 -92.71 -0.53 14.90 16 47 H 0.28 15.60 8.31 -92.70 -0.77 14.83 16 48 H 0.20 3.77 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -89.91 406.22 0.10 -89.81 By element: Atomic # 1 Polarization: 52.67 SS G_CDS: -1.13 Total: 51.54 kcal Atomic # 6 Polarization: 24.19 SS G_CDS: 9.26 Total: 33.45 kcal Atomic # 7 Polarization: -148.38 SS G_CDS: -9.82 Total: -158.19 kcal Atomic # 8 Polarization: -57.65 SS G_CDS: -0.12 Total: -57.77 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 1.90 Total: 41.17 kcal Total: -89.91 0.10 -89.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754276663.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.593 kcal (2) G-P(sol) polarization free energy of solvation -89.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds