Wall clock time and date at job start Tue Mar 31 2020 20:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.46868 * 2 1 4 4 N 1.28443 * 125.18991 * 264.52219 * 3 2 1 5 5 C 1.30868 * 110.92933 * 180.02562 * 4 3 2 6 6 C 1.50689 * 126.06957 * 180.02562 * 5 4 3 7 7 C 1.39677 * 107.85663 * 359.77691 * 5 4 3 8 8 C 1.36600 * 125.19304 * 84.55662 * 3 2 1 9 9 C 1.47169 * 126.87988 * 359.93745 * 8 3 2 10 10 O 1.21621 * 120.00394 * 5.37972 * 9 8 3 11 11 N 1.34778 * 119.99569 * 185.37884 * 9 8 3 12 12 C 1.46506 * 119.99691 * 174.73070 * 11 9 8 13 13 H 1.08998 * 109.47504 * 325.00872 * 12 11 9 14 14 C 1.53001 * 109.46675 * 85.00532 * 12 11 9 15 15 C 1.52996 * 109.47066 * 204.99911 * 12 11 9 16 16 N 1.46898 * 109.47049 * 55.00704 * 15 12 11 17 17 C 1.46899 * 111.00264 * 179.97438 * 16 15 12 18 18 C 1.50701 * 109.47237 * 179.97438 * 17 16 15 19 19 O 1.21287 * 120.00003 * 359.97438 * 18 17 16 20 20 N 1.34778 * 120.00122 * 179.97438 * 18 17 16 21 21 C 1.37090 * 120.00148 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00184 * 0.02562 * 21 20 18 23 23 C 1.38959 * 120.00064 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99884 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 119.99643 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47344 * 90.00391 * 25 23 21 27 27 H 1.48510 * 109.46776 * 210.00145 * 25 23 21 28 28 H 1.48490 * 109.47551 * 330.00084 * 25 23 21 29 29 H 1.09001 * 109.47380 * 300.00359 * 1 2 3 30 30 H 1.09002 * 109.47559 * 60.00078 * 1 2 3 31 31 H 1.09000 * 109.47233 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46966 * 239.99953 * 2 1 3 33 33 H 1.09001 * 109.46885 * 119.99591 * 2 1 3 34 34 H 1.09002 * 109.47894 * 89.97705 * 6 5 4 35 35 H 1.09004 * 109.46946 * 209.97886 * 6 5 4 36 36 H 1.08998 * 109.47322 * 329.97388 * 6 5 4 37 37 H 1.08002 * 127.31679 * 180.22973 * 7 5 4 38 38 H 0.96998 * 120.00272 * 354.74297 * 11 9 8 39 39 H 1.08999 * 109.46956 * 179.97438 * 14 12 11 40 40 H 1.09004 * 109.47137 * 299.99853 * 14 12 11 41 41 H 1.09002 * 109.47359 * 59.99862 * 14 12 11 42 42 H 1.09002 * 109.46919 * 175.00100 * 15 12 11 43 43 H 1.09001 * 109.47661 * 295.00909 * 15 12 11 44 44 H 1.00902 * 111.00298 * 56.04459 * 16 15 12 45 45 H 1.09001 * 109.46759 * 299.99713 * 17 16 15 46 46 H 1.08999 * 109.47564 * 59.99640 * 17 16 15 47 47 H 0.97001 * 119.99859 * 0.02562 * 20 18 17 48 48 H 0.96999 * 119.99636 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.3594 2.0457 -1.0449 5 6 2.7536 3.2516 -0.7240 6 6 3.2265 4.3147 -1.6815 7 6 2.6529 3.3802 0.6632 8 6 2.1808 2.1588 1.1113 9 6 1.9034 1.7764 2.5051 10 8 1.5771 0.6349 2.7691 11 7 2.0109 2.6912 3.4889 12 6 1.6242 2.3430 4.8584 13 1 0.7725 1.6631 4.8338 14 6 2.7996 1.6625 5.5629 15 6 1.2405 3.6140 5.6188 16 7 0.1930 4.3300 4.8786 17 6 -0.2019 5.5584 5.5809 18 6 -1.2751 6.2645 4.7931 19 8 -1.6716 5.7914 3.7491 20 7 -1.7943 7.4219 5.2486 21 6 -2.7702 8.0645 4.5317 22 1 -3.1233 7.6432 3.6021 23 6 -3.3051 9.2580 5.0011 24 7 -4.2410 9.8738 4.3141 25 14 -2.6949 9.9863 6.6093 26 1 -1.5507 10.8936 6.3393 27 1 -3.7922 10.7518 7.2539 28 1 -2.2568 8.8928 7.5133 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.3760 4.9121 -2.0102 35 1 3.9507 4.9579 -1.1816 36 1 3.6948 3.8433 -2.5455 37 1 2.8942 4.2476 1.2596 38 1 2.3442 3.5802 3.2903 39 1 2.5121 1.4038 6.5819 40 1 3.0731 0.7570 5.0211 41 1 3.6514 2.3423 5.5875 42 1 0.8685 3.3472 6.6081 43 1 2.1162 4.2549 5.7206 44 1 -0.6053 3.7350 4.7149 45 1 -0.5840 5.3047 6.5697 46 1 0.6637 6.2130 5.6828 47 1 -1.4769 7.8005 6.0834 48 1 -4.6141 10.7071 4.6416 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754285382.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:24 Heat of formation + Delta-G solvation = 3.912077 kcal Electronic energy + Delta-G solvation = -29158.858050 eV Core-core repulsion = 25057.555229 eV Total energy + Delta-G solvation = -4101.302821 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.61771 -39.69048 -38.50635 -36.80344 -35.05621 -34.32834 -33.75147 -32.00891 -31.66559 -31.36871 -30.07863 -27.81031 -27.51459 -25.14755 -24.16597 -23.27194 -22.88218 -21.61015 -20.69873 -19.64786 -19.36372 -18.38327 -17.79744 -16.80240 -16.39586 -16.02431 -15.80153 -15.24956 -14.97589 -14.91169 -14.67769 -14.34510 -14.21264 -14.08995 -13.72169 -13.42100 -13.34992 -13.21876 -12.96764 -12.72258 -12.66367 -12.46916 -12.37694 -12.27784 -12.15762 -12.09798 -11.78211 -11.74123 -11.43270 -11.18558 -11.07084 -10.73580 -10.62179 -10.11428 -9.99832 -9.59708 -9.33522 -9.02602 -8.90718 -8.64479 -8.26010 -8.19562 -6.33157 -3.84758 1.21105 2.25775 2.49894 2.99810 3.04436 3.06420 3.12931 3.20558 3.70891 3.95938 4.08088 4.33415 4.47877 4.65401 4.78844 4.81675 4.82777 4.94083 4.99674 5.08812 5.13995 5.20180 5.29695 5.32258 5.44535 5.46322 5.48034 5.52438 5.56773 5.57758 5.60194 5.74379 5.75779 5.80738 5.87965 5.92966 5.94896 5.97315 6.33430 6.46269 6.70425 6.96416 7.37398 7.44850 7.55647 7.98620 8.09204 8.12252 8.57284 8.92898 9.40022 9.80087 10.79995 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011582 B = 0.002622 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.861794 B =10677.767579 C =11893.261485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.116 3.884 3 N -0.255 5.255 4 N -0.279 5.279 5 C 0.021 3.979 6 C -0.066 4.066 7 C -0.180 4.180 8 C -0.034 4.034 9 C 0.596 3.404 10 O -0.549 6.549 11 N -0.691 5.691 12 C 0.149 3.851 13 H 0.088 0.912 14 C -0.162 4.162 15 C 0.047 3.953 16 N -0.667 5.667 17 C 0.048 3.952 18 C 0.449 3.551 19 O -0.563 6.563 20 N -0.590 5.590 21 C -0.305 4.305 22 H 0.119 0.881 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.160 0.840 38 H 0.409 0.591 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.046 0.954 43 H 0.079 0.921 44 H 0.352 0.648 45 H 0.045 0.955 46 H 0.088 0.912 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.791 -15.695 -0.407 23.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.003 4.003 3 N -0.043 5.043 4 N -0.112 5.112 5 C -0.135 4.135 6 C -0.125 4.125 7 C -0.209 4.209 8 C -0.162 4.162 9 C 0.381 3.619 10 O -0.427 6.427 11 N -0.342 5.342 12 C 0.044 3.956 13 H 0.106 0.894 14 C -0.221 4.221 15 C -0.083 4.083 16 N -0.299 5.299 17 C -0.085 4.085 18 C 0.234 3.766 19 O -0.445 6.445 20 N -0.230 5.230 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.130 0.870 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.178 0.822 38 H 0.245 0.755 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.098 0.902 44 H 0.172 0.828 45 H 0.063 0.937 46 H 0.106 0.894 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 17.324 -17.185 -2.254 24.506 hybrid contribution -0.022 1.443 2.671 3.036 sum 17.302 -15.741 0.417 23.395 Atomic orbital electron populations 1.22092 0.93366 1.03405 1.03406 1.22115 0.96245 0.76606 1.05358 1.45728 1.44406 1.12226 1.01961 1.73100 1.17477 1.06990 1.13677 1.21995 1.04252 0.93297 0.93953 1.20084 1.01261 0.94392 0.96758 1.22138 1.06611 0.97068 0.95118 1.21339 1.11445 0.93483 0.89962 1.16858 0.77021 0.84962 0.83025 1.90755 1.48930 1.19172 1.83863 1.45498 1.65558 1.15744 1.07386 1.20988 0.97891 0.96162 0.80545 0.89404 1.22150 0.98069 1.01241 1.00606 1.22334 0.96594 0.94322 0.95055 1.60062 1.15007 1.07254 1.47619 1.21714 0.98613 0.92941 0.95214 1.19694 0.85827 0.83137 0.87923 1.90582 1.63035 1.66454 1.24390 1.42201 1.36769 1.21563 1.22443 1.19428 1.13128 1.04043 1.06813 0.86313 1.25047 0.96485 0.96486 0.98152 1.69624 1.26373 1.17572 1.38515 0.86663 0.79410 0.79830 0.83402 1.19583 1.20205 1.19559 0.91318 0.91908 0.90186 0.88543 0.86957 0.90639 0.90550 0.91213 0.82200 0.75523 0.91478 0.91674 0.92201 0.93617 0.90246 0.82806 0.93701 0.89406 0.79719 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 10.24 37.16 0.38 -1.33 16 2 C 0.12 1.23 6.41 -4.04 -0.03 1.21 16 3 N -0.26 -3.38 3.35 -57.14 -0.19 -3.57 16 4 N -0.28 -3.84 11.90 33.64 0.40 -3.44 16 5 C 0.02 0.27 7.22 -82.47 -0.60 -0.33 16 6 C -0.07 -0.61 10.45 36.00 0.38 -0.23 16 7 C -0.18 -2.20 10.44 -38.99 -0.41 -2.61 16 8 C -0.03 -0.45 6.96 -82.06 -0.57 -1.02 16 9 C 0.60 7.77 7.75 -12.63 -0.10 7.67 16 10 O -0.55 -8.00 14.39 5.26 0.08 -7.93 16 11 N -0.69 -7.54 4.79 -54.96 -0.26 -7.81 16 12 C 0.15 1.46 2.78 -67.93 -0.19 1.28 16 13 H 0.09 1.00 7.66 -51.93 -0.40 0.60 16 14 C -0.16 -1.30 9.48 37.16 0.35 -0.95 16 15 C 0.05 0.45 5.24 -3.83 -0.02 0.43 16 16 N -0.67 -9.20 5.85 -115.06 -0.67 -9.87 16 17 C 0.05 0.73 6.17 -4.98 -0.03 0.70 16 18 C 0.45 9.83 7.82 -10.98 -0.09 9.74 16 19 O -0.56 -14.83 15.78 5.55 0.09 -14.74 16 20 N -0.59 -13.72 5.09 -10.96 -0.06 -13.77 16 21 C -0.31 -8.55 10.16 -14.93 -0.15 -8.70 16 22 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 23 C 0.04 1.12 5.50 -17.46 -0.10 1.03 16 24 N -0.88 -25.60 13.96 55.50 0.77 -24.82 16 25 Si 0.88 19.05 27.73 -169.99 -4.71 14.34 16 26 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 27 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 28 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 29 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.11 1.20 6.53 -51.93 -0.34 0.86 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.16 1.57 7.58 -52.49 -0.40 1.17 16 38 H 0.41 4.10 7.63 -40.82 -0.31 3.79 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.35 5.42 8.43 -39.29 -0.33 5.08 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.37 7.50 5.76 -40.82 -0.24 7.26 16 48 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 403.34 15.07 6.08 6.08 Total: -1.00 -34.97 403.34 -7.12 -42.09 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -7.48 Total: 16.57 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -1.16 Total: 6.87 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: -0.01 Total: -63.28 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: 0.16 Total: -22.67 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.71 Total: 14.34 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.97 -7.12 -42.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754285382.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.004 kcal (2) G-P(sol) polarization free energy of solvation -34.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds