Wall clock time and date at job start Tue Mar 31 2020 20:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.46868 * 2 1 4 4 N 1.28443 * 125.18991 * 264.52219 * 3 2 1 5 5 C 1.30868 * 110.92933 * 180.02562 * 4 3 2 6 6 C 1.50689 * 126.06957 * 180.02562 * 5 4 3 7 7 C 1.39677 * 107.85663 * 359.77691 * 5 4 3 8 8 C 1.36600 * 125.19304 * 84.55662 * 3 2 1 9 9 C 1.47169 * 126.87988 * 359.93745 * 8 3 2 10 10 O 1.21621 * 120.00394 * 5.37972 * 9 8 3 11 11 N 1.34778 * 119.99569 * 185.37884 * 9 8 3 12 12 C 1.46506 * 119.99691 * 174.73070 * 11 9 8 13 13 H 1.08998 * 109.47504 * 325.00872 * 12 11 9 14 14 C 1.53001 * 109.46675 * 85.00532 * 12 11 9 15 15 C 1.52996 * 109.47066 * 204.99911 * 12 11 9 16 16 N 1.46898 * 109.47049 * 55.00704 * 15 12 11 17 17 C 1.46899 * 111.00264 * 179.97438 * 16 15 12 18 18 C 1.50701 * 109.47237 * 179.97438 * 17 16 15 19 19 O 1.21287 * 120.00003 * 359.97438 * 18 17 16 20 20 N 1.34778 * 120.00122 * 179.97438 * 18 17 16 21 21 C 1.37090 * 120.00148 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00184 * 0.02562 * 21 20 18 23 23 C 1.38959 * 120.00064 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99884 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 119.99643 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47344 * 90.00391 * 25 23 21 27 27 H 1.48510 * 109.46776 * 210.00145 * 25 23 21 28 28 H 1.48490 * 109.47551 * 330.00084 * 25 23 21 29 29 H 1.09001 * 109.47380 * 300.00359 * 1 2 3 30 30 H 1.09002 * 109.47559 * 60.00078 * 1 2 3 31 31 H 1.09000 * 109.47233 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46966 * 239.99953 * 2 1 3 33 33 H 1.09001 * 109.46885 * 119.99591 * 2 1 3 34 34 H 1.09002 * 109.47894 * 89.97705 * 6 5 4 35 35 H 1.09004 * 109.46946 * 209.97886 * 6 5 4 36 36 H 1.08998 * 109.47322 * 329.97388 * 6 5 4 37 37 H 1.08002 * 127.31679 * 180.22973 * 7 5 4 38 38 H 0.96998 * 120.00272 * 354.74297 * 11 9 8 39 39 H 1.08999 * 109.46956 * 179.97438 * 14 12 11 40 40 H 1.09004 * 109.47137 * 299.99853 * 14 12 11 41 41 H 1.09002 * 109.47359 * 59.99862 * 14 12 11 42 42 H 1.09002 * 109.46919 * 175.00100 * 15 12 11 43 43 H 1.09001 * 109.47661 * 295.00909 * 15 12 11 44 44 H 1.00902 * 111.00298 * 56.04459 * 16 15 12 45 45 H 1.09001 * 109.46759 * 299.99713 * 17 16 15 46 46 H 1.08999 * 109.47564 * 59.99640 * 17 16 15 47 47 H 0.97001 * 119.99859 * 0.02562 * 20 18 17 48 48 H 0.96999 * 119.99636 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.3594 2.0457 -1.0449 5 6 2.7536 3.2516 -0.7240 6 6 3.2265 4.3147 -1.6815 7 6 2.6529 3.3802 0.6632 8 6 2.1808 2.1588 1.1113 9 6 1.9034 1.7764 2.5051 10 8 1.5771 0.6349 2.7691 11 7 2.0109 2.6912 3.4889 12 6 1.6242 2.3430 4.8584 13 1 0.7725 1.6631 4.8338 14 6 2.7996 1.6625 5.5629 15 6 1.2405 3.6140 5.6188 16 7 0.1930 4.3300 4.8786 17 6 -0.2019 5.5584 5.5809 18 6 -1.2751 6.2645 4.7931 19 8 -1.6716 5.7914 3.7491 20 7 -1.7943 7.4219 5.2486 21 6 -2.7702 8.0645 4.5317 22 1 -3.1233 7.6432 3.6021 23 6 -3.3051 9.2580 5.0011 24 7 -4.2410 9.8738 4.3141 25 14 -2.6949 9.9863 6.6093 26 1 -1.5507 10.8936 6.3393 27 1 -3.7922 10.7518 7.2539 28 1 -2.2568 8.8928 7.5133 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.3760 4.9121 -2.0102 35 1 3.9507 4.9579 -1.1816 36 1 3.6948 3.8433 -2.5455 37 1 2.8942 4.2476 1.2596 38 1 2.3442 3.5802 3.2903 39 1 2.5121 1.4038 6.5819 40 1 3.0731 0.7570 5.0211 41 1 3.6514 2.3423 5.5875 42 1 0.8685 3.3472 6.6081 43 1 2.1162 4.2549 5.7206 44 1 -0.6053 3.7350 4.7149 45 1 -0.5840 5.3047 6.5697 46 1 0.6637 6.2130 5.6828 47 1 -1.4769 7.8005 6.0834 48 1 -4.6141 10.7071 4.6416 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754285382.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:23 Heat of formation + Delta-G solvation = -24.496369 kcal Electronic energy + Delta-G solvation = -29160.089933 eV Core-core repulsion = 25057.555229 eV Total energy + Delta-G solvation = -4102.534704 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.56831 -40.67083 -40.21266 -37.82626 -36.12724 -35.86436 -35.07857 -33.72877 -32.92275 -32.21549 -30.99283 -29.06302 -28.35692 -26.63286 -25.20243 -24.43766 -23.83981 -22.49729 -21.61590 -21.23412 -20.57435 -20.19320 -18.76085 -17.87046 -17.64564 -17.19435 -16.96316 -16.66503 -16.33558 -15.93629 -15.67805 -15.56615 -15.30391 -15.18449 -14.87847 -14.64207 -14.58476 -14.26672 -14.14396 -14.03381 -13.82562 -13.40208 -13.26345 -13.16330 -13.12204 -12.98357 -12.97322 -12.78394 -12.69716 -12.39794 -12.31405 -11.97171 -11.83593 -11.68769 -11.49381 -11.11843 -10.43280 -10.29744 -10.23219 -9.94270 -9.83580 -9.32251 -8.40086 -6.01137 0.22712 1.31320 1.36401 1.37566 1.46227 1.55009 1.99209 2.13313 2.24633 2.27016 2.73707 3.16672 3.39099 3.47768 3.59817 3.83737 3.96100 3.97263 4.11725 4.14662 4.24106 4.25515 4.37740 4.42892 4.50650 4.60381 4.62344 4.66837 4.68648 4.72676 4.79537 4.81728 4.87796 5.01111 5.04885 5.07613 5.13866 5.31615 5.48554 5.54025 5.58763 5.78984 5.91076 6.04925 6.31661 6.46395 6.61389 6.90319 7.03904 7.13691 7.42150 7.99953 8.77866 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011582 B = 0.002622 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.861794 B =10677.767579 C =11893.261485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.113 3.887 3 N -0.264 5.264 4 N -0.300 5.300 5 C 0.009 3.991 6 C -0.065 4.065 7 C -0.184 4.184 8 C -0.053 4.053 9 C 0.591 3.409 10 O -0.571 6.571 11 N -0.682 5.682 12 C 0.148 3.852 13 H 0.067 0.933 14 C -0.153 4.153 15 C 0.054 3.946 16 N -0.684 5.684 17 C 0.064 3.936 18 C 0.447 3.553 19 O -0.616 6.616 20 N -0.591 5.591 21 C -0.329 4.329 22 H 0.052 0.948 23 C -0.017 4.017 24 N -0.937 5.937 25 Si 0.968 3.032 26 H -0.256 1.256 27 H -0.278 1.278 28 H -0.229 1.229 29 H 0.040 0.960 30 H 0.054 0.946 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.182 0.818 38 H 0.414 0.586 39 H 0.085 0.915 40 H 0.046 0.954 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.103 0.897 44 H 0.339 0.661 45 H 0.078 0.922 46 H 0.122 0.878 47 H 0.390 0.610 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.568 -15.245 2.883 25.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.006 4.006 3 N -0.052 5.052 4 N -0.134 5.134 5 C -0.147 4.147 6 C -0.123 4.123 7 C -0.213 4.213 8 C -0.181 4.181 9 C 0.377 3.623 10 O -0.451 6.451 11 N -0.333 5.333 12 C 0.044 3.956 13 H 0.086 0.914 14 C -0.211 4.211 15 C -0.075 4.075 16 N -0.316 5.316 17 C -0.068 4.068 18 C 0.235 3.765 19 O -0.500 6.500 20 N -0.233 5.233 21 C -0.458 4.458 22 H 0.070 0.930 23 C -0.216 4.216 24 N -0.578 5.578 25 Si 0.787 3.213 26 H -0.180 1.180 27 H -0.203 1.203 28 H -0.152 1.152 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.124 0.876 32 H 0.135 0.865 33 H 0.128 0.872 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.199 0.801 38 H 0.251 0.749 39 H 0.104 0.896 40 H 0.065 0.935 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.121 0.879 44 H 0.157 0.843 45 H 0.096 0.904 46 H 0.140 0.860 47 H 0.226 0.774 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 20.141 -16.746 1.063 26.215 hybrid contribution -0.923 1.219 1.521 2.157 sum 19.218 -15.527 2.585 24.842 Atomic orbital electron populations 1.22034 0.93410 1.04525 1.01508 1.22261 0.96146 0.75993 1.06196 1.45982 1.44495 1.12879 1.01891 1.73073 1.18296 1.07815 1.14246 1.22603 1.03757 0.93542 0.94810 1.20197 1.01715 0.93787 0.96605 1.22484 1.06089 0.97357 0.95356 1.21617 1.12044 0.94197 0.90270 1.16948 0.76992 0.85019 0.83348 1.90732 1.50155 1.20093 1.84167 1.45520 1.64672 1.15528 1.07568 1.21086 0.98070 0.96368 0.80099 0.91449 1.22067 0.97618 1.00482 1.00957 1.22409 0.95944 0.93877 0.95232 1.60065 1.15249 1.07226 1.49053 1.21644 0.97078 0.93215 0.94912 1.21112 0.85819 0.82179 0.87403 1.90565 1.64775 1.67589 1.27115 1.42022 1.36211 1.22114 1.22966 1.18986 1.15519 1.05388 1.05896 0.93021 1.26160 0.96018 0.96192 1.03183 1.69818 1.28215 1.18374 1.41378 0.85331 0.78967 0.79741 0.77235 1.18010 1.20329 1.15178 0.94083 0.92683 0.87602 0.86547 0.87180 0.90661 0.88442 0.90506 0.80117 0.74906 0.89633 0.93531 0.90668 0.91353 0.87898 0.84303 0.90425 0.86034 0.77399 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 10.24 71.98 0.74 -2.66 16 2 C 0.11 2.46 6.41 86.38 0.55 3.01 16 3 N -0.26 -7.16 3.35 -334.69 -1.12 -8.28 16 4 N -0.30 -8.39 11.90 -47.50 -0.57 -8.95 16 5 C 0.01 0.22 7.22 43.05 0.31 0.53 16 6 C -0.06 -1.13 10.45 71.23 0.74 -0.39 16 7 C -0.18 -4.44 10.44 22.66 0.24 -4.20 16 8 C -0.05 -1.43 6.96 40.79 0.28 -1.14 16 9 C 0.59 15.60 7.75 86.59 0.67 16.27 16 10 O -0.57 -17.12 14.39 -4.10 -0.06 -17.18 16 11 N -0.68 -14.22 4.79 -446.05 -2.14 -16.35 16 12 C 0.15 2.63 2.78 44.99 0.12 2.76 16 13 H 0.07 1.50 7.66 -2.39 -0.02 1.48 16 14 C -0.15 -2.06 9.48 71.98 0.68 -1.38 16 15 C 0.05 0.83 5.24 86.30 0.45 1.29 16 16 N -0.68 -17.21 5.85 -517.94 -3.03 -20.24 16 17 C 0.06 1.69 6.17 85.56 0.53 2.21 16 18 C 0.45 19.24 7.82 87.66 0.69 19.92 16 19 O -0.62 -33.55 15.78 -3.05 -0.05 -33.60 16 20 N -0.59 -26.92 5.09 -306.99 -1.56 -28.48 16 21 C -0.33 -19.06 10.16 84.04 0.85 -18.21 16 22 H 0.05 3.61 7.39 -2.91 -0.02 3.59 16 23 C -0.02 -0.95 5.50 84.93 0.47 -0.48 16 24 N -0.94 -56.42 13.96 21.67 0.30 -56.12 16 25 Si 0.97 37.86 27.73 68.60 1.90 39.76 16 26 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 27 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 28 H -0.23 -7.36 6.52 99.48 0.65 -6.71 16 29 H 0.04 1.10 8.07 -2.39 -0.02 1.09 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.11 2.43 6.53 -2.39 -0.02 2.41 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 37 H 0.18 3.33 7.58 -2.91 -0.02 3.31 16 38 H 0.41 7.63 7.63 -92.71 -0.71 6.93 16 39 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.05 0.82 8.08 -2.38 -0.02 0.80 16 41 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.10 1.17 8.14 -2.39 -0.02 1.16 16 44 H 0.34 10.14 8.43 -89.69 -0.76 9.38 16 45 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 47 H 0.39 14.43 5.76 -92.71 -0.53 13.89 16 48 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -83.83 403.34 -0.04 -83.87 By element: Atomic # 1 Polarization: 49.10 SS G_CDS: -1.06 Total: 48.05 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: 7.33 Total: 17.54 kcal Atomic # 7 Polarization: -130.31 SS G_CDS: -8.11 Total: -138.43 kcal Atomic # 8 Polarization: -50.67 SS G_CDS: -0.11 Total: -50.78 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 1.90 Total: 39.76 kcal Total: -83.83 -0.04 -83.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754285382.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.372 kcal (2) G-P(sol) polarization free energy of solvation -83.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds