Wall clock time and date at job start Tue Mar 31 2020 20:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46891 * 2 1 4 4 N 1.46500 * 109.46781 * 120.00199 * 2 1 3 5 5 C 1.35039 * 124.88319 * 274.99862 * 4 2 1 6 6 C 1.35362 * 107.22755 * 180.26641 * 5 4 2 7 7 C 1.41505 * 105.50418 * 359.63738 * 6 5 4 8 8 C 1.47708 * 126.51818 * 180.10324 * 7 6 5 9 9 O 1.21566 * 120.00392 * 0.29014 * 8 7 6 10 10 N 1.34781 * 119.99674 * 180.29018 * 8 7 6 11 11 C 1.46501 * 119.99497 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47640 * 324.99334 * 11 10 8 13 13 C 1.52993 * 109.47371 * 85.00110 * 11 10 8 14 14 C 1.53007 * 109.46613 * 205.00047 * 11 10 8 15 15 N 1.46895 * 109.47361 * 55.00111 * 14 11 10 16 16 C 1.46904 * 110.99755 * 180.02562 * 15 14 11 17 17 C 1.50702 * 109.46609 * 180.02562 * 16 15 14 18 18 O 1.21291 * 120.00316 * 359.97438 * 17 16 15 19 19 N 1.34780 * 119.99881 * 180.02562 * 17 16 15 20 20 C 1.37096 * 120.00225 * 180.02562 * 19 17 16 21 21 H 1.07996 * 119.99700 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00116 * 179.97438 * 20 19 17 23 23 N 1.31418 * 119.99883 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00209 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46818 * 59.99728 * 24 22 20 26 26 H 1.48496 * 109.47327 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46703 * 300.00512 * 24 22 20 28 28 N 1.28462 * 124.88479 * 95.02770 * 4 2 1 29 29 H 1.08999 * 109.47484 * 300.00038 * 1 2 3 30 30 H 1.09001 * 109.47056 * 60.00018 * 1 2 3 31 31 H 1.09009 * 109.47299 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46762 * 240.00122 * 2 1 3 33 33 H 1.08999 * 109.47273 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47799 * 300.00261 * 3 2 1 35 35 H 1.09005 * 109.46939 * 60.00147 * 3 2 1 36 36 H 1.08002 * 126.38339 * 359.97438 * 5 4 2 37 37 H 1.07997 * 127.25122 * 179.75010 * 6 5 4 38 38 H 0.97002 * 120.00334 * 359.97438 * 10 8 7 39 39 H 1.08995 * 109.47246 * 299.99868 * 13 11 10 40 40 H 1.09002 * 109.47473 * 59.99601 * 13 11 10 41 41 H 1.08999 * 109.47478 * 179.97438 * 13 11 10 42 42 H 1.09009 * 109.46957 * 175.00211 * 14 11 10 43 43 H 1.08998 * 109.46937 * 294.99481 * 14 11 10 44 44 H 1.00903 * 111.00136 * 303.94956 * 15 14 11 45 45 H 1.08998 * 109.47051 * 299.99182 * 16 15 14 46 46 H 1.08993 * 109.47520 * 59.99896 * 16 15 14 47 47 H 0.97001 * 119.99631 * 359.97438 * 19 17 16 48 48 H 0.96999 * 119.99428 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1847 -0.1152 2.4064 6 6 2.6539 -1.0700 3.2433 7 6 2.7476 -2.2456 2.4612 8 6 3.2091 -3.5718 2.9196 9 8 3.5508 -3.7305 4.0754 10 7 3.2513 -4.6060 2.0563 11 6 3.7084 -5.9214 2.5111 12 1 4.4966 -5.7956 3.2534 13 6 2.5363 -6.6809 3.1355 14 6 4.2519 -6.7124 1.3195 15 7 5.2972 -5.9291 0.6475 16 6 5.8430 -6.6588 -0.5048 17 6 6.9105 -5.8261 -1.1668 18 8 7.1888 -4.7323 -0.7228 19 7 7.5551 -6.2965 -2.2530 20 6 8.5266 -5.5392 -2.8550 21 1 8.7750 -4.5657 -2.4590 22 6 9.1915 -6.0244 -3.9744 23 7 8.8896 -7.2093 -4.4559 24 14 10.5147 -4.9923 -4.7951 25 1 11.6027 -4.7179 -3.8224 26 1 11.0669 -5.7301 -5.9595 27 1 9.9268 -3.7086 -5.2552 28 7 2.3502 -1.9307 1.2445 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.9854 0.9160 2.6583 37 1 2.9025 -0.9586 4.2883 38 1 2.9783 -4.4795 1.1341 39 1 2.1491 -6.1174 3.9844 40 1 1.7481 -6.8068 2.3932 41 1 2.8763 -7.6598 3.4735 42 1 4.6729 -7.6547 1.6704 43 1 3.4423 -6.9151 0.6183 44 1 4.9485 -5.0240 0.3696 45 1 6.2750 -7.6008 -0.1669 46 1 5.0444 -6.8607 -1.2185 47 1 7.3322 -7.1711 -2.6083 48 1 9.3541 -7.5481 -5.2371 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754285552.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:24 Heat of formation + Delta-G solvation = 2.969344 kcal Electronic energy + Delta-G solvation = -28751.982705 eV Core-core repulsion = 24650.639004 eV Total energy + Delta-G solvation = -4101.343701 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.82969 -39.59350 -38.24995 -36.66185 -36.09708 -34.20568 -33.58085 -31.54394 -31.16615 -31.07083 -29.93463 -27.85593 -27.54579 -25.08513 -24.52003 -23.23577 -22.79418 -20.94845 -20.59843 -19.99793 -19.21564 -18.06833 -17.82461 -17.02407 -16.32788 -16.15521 -15.94576 -15.29639 -15.06765 -14.75323 -14.50618 -14.28103 -14.20999 -13.94423 -13.83143 -13.50604 -13.35075 -13.33855 -13.00427 -12.83333 -12.70673 -12.55793 -12.36766 -11.91941 -11.87246 -11.69716 -11.64579 -11.57152 -11.43508 -11.05900 -11.00950 -10.89009 -10.43016 -10.19491 -10.05877 -9.47976 -9.39771 -9.21625 -9.00855 -8.42603 -8.03249 -7.93430 -6.39767 -3.80398 1.53856 2.03554 2.19544 3.18065 3.21265 3.26549 3.31304 3.48630 3.93719 3.96906 4.09727 4.30352 4.32330 4.52008 4.53019 4.55547 4.87507 4.93552 4.99587 5.07392 5.12572 5.22242 5.24747 5.26502 5.28708 5.33128 5.45991 5.50592 5.57882 5.59406 5.63295 5.65854 5.70306 5.81825 5.98862 6.02972 6.14760 6.27159 6.29744 6.52513 6.61915 7.21691 7.46927 7.56940 7.66780 7.83477 8.08433 8.27523 8.64005 9.20102 9.56711 10.08798 10.78046 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009081 B = 0.002662 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.760139 B =10516.619226 C =12747.875638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.139 3.861 3 C -0.165 4.165 4 N -0.275 5.275 5 C -0.020 4.020 6 C -0.179 4.179 7 C -0.018 4.018 8 C 0.611 3.389 9 O -0.534 6.534 10 N -0.710 5.710 11 C 0.144 3.856 12 H 0.100 0.900 13 C -0.161 4.161 14 C 0.051 3.949 15 N -0.667 5.667 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.581 6.581 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 N -0.258 5.258 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.112 0.888 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.179 0.821 37 H 0.161 0.839 38 H 0.403 0.597 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.032 0.968 44 H 0.349 0.651 45 H 0.087 0.913 46 H 0.043 0.957 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.620 10.333 9.430 24.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 C -0.223 4.223 4 N -0.064 5.064 5 C -0.163 4.163 6 C -0.207 4.207 7 C -0.178 4.178 8 C 0.395 3.605 9 O -0.409 6.409 10 N -0.362 5.362 11 C 0.039 3.961 12 H 0.118 0.882 13 C -0.220 4.220 14 C -0.079 4.079 15 N -0.301 5.301 16 C -0.083 4.083 17 C 0.226 3.774 18 O -0.465 6.465 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.200 1.200 28 N -0.094 5.094 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.130 0.870 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.196 0.804 37 H 0.178 0.822 38 H 0.238 0.762 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.106 0.894 43 H 0.050 0.950 44 H 0.169 0.831 45 H 0.105 0.895 46 H 0.061 0.939 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.789 10.241 9.643 24.279 hybrid contribution -0.176 0.416 -1.110 1.198 sum -19.965 10.657 8.533 24.187 Atomic orbital electron populations 1.22224 0.92868 1.03649 1.03466 1.21621 0.95433 0.93509 0.85557 1.22200 1.02865 0.93347 1.03907 1.45730 1.45203 1.05987 1.09488 1.22732 1.07103 1.00823 0.85593 1.21751 1.06442 0.91101 1.01391 1.21936 1.08616 0.96239 0.90966 1.16816 0.76933 0.81717 0.84996 1.90775 1.48713 1.83610 1.17795 1.45848 1.66842 1.09642 1.13834 1.21077 0.96634 0.81354 0.96988 0.88235 1.22150 0.98137 1.00499 1.01202 1.22304 0.93137 0.97497 0.94987 1.60031 1.35420 1.05973 1.28641 1.21690 0.97022 0.97825 0.91723 1.19822 0.86004 0.88320 0.83247 1.90536 1.68331 1.22230 1.65400 1.41850 1.34002 1.19074 1.25195 1.19654 1.12726 1.01674 1.08798 0.88029 1.25252 0.99057 0.96473 0.97152 1.69609 1.42849 1.17385 1.24601 0.85922 0.80564 0.79318 0.78441 1.19872 1.20979 1.19961 1.73493 1.15966 0.98000 1.21903 0.91650 0.89974 0.91379 0.87020 0.90987 0.89560 0.91284 0.80435 0.82158 0.76225 0.91834 0.92570 0.91316 0.89385 0.94992 0.83085 0.89453 0.93884 0.77471 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 9.52 37.16 0.35 -0.48 16 2 C 0.14 0.94 3.80 -67.93 -0.26 0.68 16 3 C -0.17 -0.77 8.80 37.15 0.33 -0.45 16 4 N -0.27 -2.78 3.22 -54.83 -0.18 -2.96 16 5 C -0.02 -0.19 10.54 -17.17 -0.18 -0.37 16 6 C -0.18 -2.13 10.81 -39.36 -0.43 -2.55 16 7 C -0.02 -0.25 7.13 -82.76 -0.59 -0.84 16 8 C 0.61 9.37 7.79 -12.39 -0.10 9.28 16 9 O -0.53 -9.53 16.59 5.31 0.09 -9.44 16 10 N -0.71 -9.48 4.35 -54.79 -0.24 -9.72 16 11 C 0.14 1.81 2.88 -67.93 -0.20 1.62 16 12 H 0.10 1.48 7.58 -51.93 -0.39 1.09 16 13 C -0.16 -1.65 9.48 37.15 0.35 -1.29 16 14 C 0.05 0.64 5.30 -3.82 -0.02 0.62 16 15 N -0.67 -11.31 6.12 -115.05 -0.70 -12.02 16 16 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 17 C 0.44 10.69 7.82 -10.98 -0.09 10.61 16 18 O -0.58 -16.34 15.78 5.55 0.09 -16.26 16 19 N -0.56 -14.56 5.29 -10.96 -0.06 -14.62 16 20 C -0.30 -8.48 9.68 -14.93 -0.14 -8.63 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 23 N -0.90 -24.80 13.05 55.50 0.72 -24.07 16 24 Si 0.93 21.31 29.55 -169.99 -5.02 16.28 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 28 N -0.26 -3.35 11.67 33.42 0.39 -2.96 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 32 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.24 7.05 -51.93 -0.37 -0.12 16 36 H 0.18 0.96 7.16 -52.49 -0.38 0.59 16 37 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.40 5.02 7.88 -40.82 -0.32 4.70 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 43 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.35 6.26 7.28 -39.29 -0.29 5.97 16 45 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 46 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 48 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 406.37 15.07 6.12 6.12 Total: -1.00 -35.71 406.37 -7.37 -43.08 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: -7.50 Total: 16.98 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: -1.09 Total: 9.57 kcal Atomic # 7 Polarization: -66.28 SS G_CDS: -0.06 Total: -66.35 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: 0.18 Total: -25.70 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.71 -7.37 -43.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754285552.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.053 kcal (2) G-P(sol) polarization free energy of solvation -35.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds