Wall clock time and date at job start Tue Mar 31 2020 20:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46891 * 2 1 4 4 N 1.46500 * 109.46781 * 120.00199 * 2 1 3 5 5 C 1.35039 * 124.88319 * 274.99862 * 4 2 1 6 6 C 1.35362 * 107.22755 * 180.26641 * 5 4 2 7 7 C 1.41505 * 105.50418 * 359.63738 * 6 5 4 8 8 C 1.47708 * 126.51818 * 180.10324 * 7 6 5 9 9 O 1.21566 * 120.00392 * 0.29014 * 8 7 6 10 10 N 1.34781 * 119.99674 * 180.29018 * 8 7 6 11 11 C 1.46501 * 119.99497 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47640 * 324.99334 * 11 10 8 13 13 C 1.52993 * 109.47371 * 85.00110 * 11 10 8 14 14 C 1.53007 * 109.46613 * 205.00047 * 11 10 8 15 15 N 1.46895 * 109.47361 * 55.00111 * 14 11 10 16 16 C 1.46904 * 110.99755 * 180.02562 * 15 14 11 17 17 C 1.50702 * 109.46609 * 180.02562 * 16 15 14 18 18 O 1.21291 * 120.00316 * 359.97438 * 17 16 15 19 19 N 1.34780 * 119.99881 * 180.02562 * 17 16 15 20 20 C 1.37096 * 120.00225 * 180.02562 * 19 17 16 21 21 H 1.07996 * 119.99700 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00116 * 179.97438 * 20 19 17 23 23 N 1.31418 * 119.99883 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00209 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46818 * 59.99728 * 24 22 20 26 26 H 1.48496 * 109.47327 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46703 * 300.00512 * 24 22 20 28 28 N 1.28462 * 124.88479 * 95.02770 * 4 2 1 29 29 H 1.08999 * 109.47484 * 300.00038 * 1 2 3 30 30 H 1.09001 * 109.47056 * 60.00018 * 1 2 3 31 31 H 1.09009 * 109.47299 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46762 * 240.00122 * 2 1 3 33 33 H 1.08999 * 109.47273 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47799 * 300.00261 * 3 2 1 35 35 H 1.09005 * 109.46939 * 60.00147 * 3 2 1 36 36 H 1.08002 * 126.38339 * 359.97438 * 5 4 2 37 37 H 1.07997 * 127.25122 * 179.75010 * 6 5 4 38 38 H 0.97002 * 120.00334 * 359.97438 * 10 8 7 39 39 H 1.08995 * 109.47246 * 299.99868 * 13 11 10 40 40 H 1.09002 * 109.47473 * 59.99601 * 13 11 10 41 41 H 1.08999 * 109.47478 * 179.97438 * 13 11 10 42 42 H 1.09009 * 109.46957 * 175.00211 * 14 11 10 43 43 H 1.08998 * 109.46937 * 294.99481 * 14 11 10 44 44 H 1.00903 * 111.00136 * 303.94956 * 15 14 11 45 45 H 1.08998 * 109.47051 * 299.99182 * 16 15 14 46 46 H 1.08993 * 109.47520 * 59.99896 * 16 15 14 47 47 H 0.97001 * 119.99631 * 359.97438 * 19 17 16 48 48 H 0.96999 * 119.99428 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1847 -0.1152 2.4064 6 6 2.6539 -1.0700 3.2433 7 6 2.7476 -2.2456 2.4612 8 6 3.2091 -3.5718 2.9196 9 8 3.5508 -3.7305 4.0754 10 7 3.2513 -4.6060 2.0563 11 6 3.7084 -5.9214 2.5111 12 1 4.4966 -5.7956 3.2534 13 6 2.5363 -6.6809 3.1355 14 6 4.2519 -6.7124 1.3195 15 7 5.2972 -5.9291 0.6475 16 6 5.8430 -6.6588 -0.5048 17 6 6.9105 -5.8261 -1.1668 18 8 7.1888 -4.7323 -0.7228 19 7 7.5551 -6.2965 -2.2530 20 6 8.5266 -5.5392 -2.8550 21 1 8.7750 -4.5657 -2.4590 22 6 9.1915 -6.0244 -3.9744 23 7 8.8896 -7.2093 -4.4559 24 14 10.5147 -4.9923 -4.7951 25 1 11.6027 -4.7179 -3.8224 26 1 11.0669 -5.7301 -5.9595 27 1 9.9268 -3.7086 -5.2552 28 7 2.3502 -1.9307 1.2445 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.9854 0.9160 2.6583 37 1 2.9025 -0.9586 4.2883 38 1 2.9783 -4.4795 1.1341 39 1 2.1491 -6.1174 3.9844 40 1 1.7481 -6.8068 2.3932 41 1 2.8763 -7.6598 3.4735 42 1 4.6729 -7.6547 1.6704 43 1 3.4423 -6.9151 0.6183 44 1 4.9485 -5.0240 0.3696 45 1 6.2750 -7.6008 -0.1669 46 1 5.0444 -6.8607 -1.2185 47 1 7.3322 -7.1711 -2.6083 48 1 9.3541 -7.5481 -5.2371 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754285552.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:23 Heat of formation + Delta-G solvation = -24.981514 kcal Electronic energy + Delta-G solvation = -28753.194745 eV Core-core repulsion = 24650.639004 eV Total energy + Delta-G solvation = -4102.555741 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.67835 -40.74686 -40.11588 -37.88075 -36.73542 -36.04675 -35.10738 -33.27877 -32.52123 -31.89779 -30.80031 -28.98956 -28.24124 -26.73784 -25.55040 -24.58308 -23.61262 -21.95775 -21.51519 -21.08870 -20.86320 -19.92664 -18.92156 -17.99310 -17.69714 -17.27839 -16.94186 -16.87997 -16.38197 -16.13602 -15.81958 -15.53686 -15.34100 -15.18311 -15.07538 -14.69952 -14.36887 -14.20569 -13.96444 -13.89547 -13.55325 -13.33811 -13.27625 -13.10609 -13.07885 -13.03522 -12.80698 -12.69112 -12.44739 -12.37908 -12.16104 -12.13370 -11.98728 -11.88709 -11.52116 -11.24009 -10.40636 -10.31732 -10.14343 -10.03056 -9.96442 -9.34846 -8.47868 -5.96759 0.53840 1.19779 1.38420 1.40339 1.48782 1.51405 2.03950 2.15714 2.28205 2.39151 2.87950 3.19233 3.30283 3.48347 3.71559 3.84112 3.87172 3.92001 4.04461 4.18787 4.22280 4.26619 4.36397 4.48863 4.57478 4.62896 4.64439 4.67051 4.72574 4.74661 4.75815 4.78650 4.80971 4.86586 5.05953 5.15188 5.20581 5.26923 5.35072 5.39174 5.48962 5.85499 5.90391 6.07755 6.30996 6.39963 6.59235 6.91049 7.11322 7.16252 7.54706 8.10880 8.69331 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009081 B = 0.002662 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.760139 B =10516.619226 C =12747.875638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.129 3.871 3 C -0.160 4.160 4 N -0.271 5.271 5 C 0.000 4.000 6 C -0.204 4.204 7 C -0.049 4.049 8 C 0.604 3.396 9 O -0.571 6.571 10 N -0.703 5.703 11 C 0.144 3.856 12 H 0.071 0.929 13 C -0.151 4.151 14 C 0.057 3.943 15 N -0.688 5.688 16 C 0.065 3.935 17 C 0.435 3.565 18 O -0.626 6.626 19 N -0.571 5.571 20 C -0.336 4.336 21 H 0.076 0.924 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.992 3.008 25 H -0.274 1.274 26 H -0.268 1.268 27 H -0.271 1.271 28 N -0.277 5.277 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.049 0.951 32 H 0.102 0.898 33 H 0.055 0.945 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.221 0.779 37 H 0.163 0.837 38 H 0.407 0.593 39 H 0.047 0.953 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.057 0.943 44 H 0.340 0.660 45 H 0.109 0.891 46 H 0.072 0.928 47 H 0.397 0.603 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.963 10.790 8.396 25.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.030 3.970 3 C -0.218 4.218 4 N -0.060 5.060 5 C -0.143 4.143 6 C -0.232 4.232 7 C -0.208 4.208 8 C 0.390 3.610 9 O -0.449 6.449 10 N -0.354 5.354 11 C 0.039 3.961 12 H 0.090 0.910 13 C -0.209 4.209 14 C -0.072 4.072 15 N -0.321 5.321 16 C -0.067 4.067 17 C 0.223 3.777 18 O -0.513 6.513 19 N -0.209 5.209 20 C -0.466 4.466 21 H 0.094 0.906 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.192 1.192 27 H -0.196 1.196 28 N -0.115 5.115 29 H 0.092 0.908 30 H 0.124 0.876 31 H 0.069 0.931 32 H 0.120 0.880 33 H 0.074 0.926 34 H 0.126 0.874 35 H 0.105 0.895 36 H 0.238 0.762 37 H 0.181 0.819 38 H 0.243 0.757 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.124 0.876 43 H 0.075 0.925 44 H 0.159 0.841 45 H 0.127 0.873 46 H 0.090 0.910 47 H 0.231 0.769 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.160 10.644 8.579 25.192 hybrid contribution 0.196 0.320 -0.815 0.897 sum -20.964 10.964 7.764 24.899 Atomic orbital electron populations 1.22195 0.91216 1.03000 1.05066 1.21999 0.96702 0.94343 0.83980 1.22219 1.01794 0.91904 1.05901 1.46194 1.43804 1.05274 1.10750 1.23294 1.04621 1.01941 0.84460 1.21990 1.07843 0.91279 1.02087 1.21940 1.10428 0.96355 0.92058 1.17126 0.76527 0.82622 0.84751 1.90733 1.50623 1.84336 1.19181 1.45856 1.66048 1.09722 1.13764 1.21117 0.96961 0.81356 0.96623 0.91030 1.22061 0.97354 1.00725 1.00800 1.22383 0.92802 0.97260 0.94781 1.60019 1.37574 1.06162 1.28346 1.21566 0.95779 0.97017 0.92355 1.20944 0.86261 0.88199 0.82333 1.90504 1.69821 1.24524 1.66429 1.41905 1.34019 1.19126 1.25803 1.19615 1.14918 1.01656 1.10402 0.90596 1.26027 1.00540 0.97573 0.96965 1.69664 1.43381 1.18128 1.24819 0.85006 0.77748 0.77986 0.77703 1.19898 1.19244 1.19618 1.73427 1.16753 0.99726 1.21545 0.90753 0.87627 0.93132 0.88017 0.92618 0.87422 0.89479 0.76216 0.81903 0.75724 0.93410 0.91027 0.89277 0.87617 0.92451 0.84123 0.87291 0.91030 0.76859 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.52 71.98 0.69 -0.60 16 2 C 0.13 1.57 3.80 44.99 0.17 1.74 16 3 C -0.16 -1.12 8.80 71.98 0.63 -0.48 16 4 N -0.27 -5.30 3.22 -327.38 -1.05 -6.36 16 5 C 0.00 0.00 10.54 83.54 0.88 0.88 16 6 C -0.20 -4.95 10.81 22.41 0.24 -4.71 16 7 C -0.05 -1.45 7.13 42.46 0.30 -1.15 16 8 C 0.60 19.63 7.79 86.75 0.68 20.30 16 9 O -0.57 -21.70 16.59 -3.92 -0.07 -21.77 16 10 N -0.70 -19.37 4.35 -445.53 -1.94 -21.31 16 11 C 0.14 3.60 2.88 44.99 0.13 3.73 16 12 H 0.07 2.21 7.58 -2.39 -0.02 2.20 16 13 C -0.15 -2.92 9.48 71.98 0.68 -2.23 16 14 C 0.06 1.32 5.30 86.31 0.46 1.78 16 15 N -0.69 -22.92 6.12 -517.92 -3.17 -26.09 16 16 C 0.07 2.26 6.17 85.56 0.53 2.79 16 17 C 0.44 21.35 7.82 87.66 0.69 22.04 16 18 O -0.63 -36.34 15.78 -3.06 -0.05 -36.39 16 19 N -0.57 -29.84 5.29 -306.98 -1.62 -31.46 16 20 C -0.34 -19.48 9.68 84.04 0.81 -18.67 16 21 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 22 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 23 N -0.92 -49.87 13.05 21.66 0.28 -49.58 16 24 Si 0.99 43.38 29.55 68.60 2.03 45.41 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 27 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 28 N -0.28 -7.39 11.67 -48.17 -0.56 -7.96 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.09 0.30 7.05 -2.38 -0.02 0.29 16 36 H 0.22 1.66 7.16 -2.91 -0.02 1.64 16 37 H 0.16 3.68 8.06 -2.91 -0.02 3.66 16 38 H 0.41 10.40 7.88 -92.71 -0.73 9.67 16 39 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 43 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.34 12.32 7.28 -89.69 -0.65 11.67 16 45 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 46 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.40 19.51 7.90 -92.71 -0.73 18.78 16 48 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -80.91 406.37 0.09 -80.82 By element: Atomic # 1 Polarization: 50.54 SS G_CDS: -1.12 Total: 49.43 kcal Atomic # 6 Polarization: 17.91 SS G_CDS: 7.35 Total: 25.27 kcal Atomic # 7 Polarization: -134.70 SS G_CDS: -8.06 Total: -142.77 kcal Atomic # 8 Polarization: -58.04 SS G_CDS: -0.11 Total: -58.16 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -80.91 0.09 -80.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754285552.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.842 kcal (2) G-P(sol) polarization free energy of solvation -80.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds