Wall clock time and date at job start Tue Mar 31 2020 19:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.46547 * 2 1 4 4 C 1.52990 * 109.46971 * 239.99447 * 2 1 3 5 5 C 1.50703 * 109.47398 * 65.00163 * 4 2 1 6 6 O 1.21283 * 119.99488 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00290 * 180.02562 * 5 4 2 8 8 C 1.46498 * 119.99828 * 180.27728 * 7 5 4 9 9 H 1.08995 * 109.47013 * 324.72129 * 8 7 5 10 10 C 1.52999 * 109.47257 * 84.72116 * 8 7 5 11 11 C 1.53004 * 109.47065 * 204.72115 * 8 7 5 12 12 N 1.46903 * 109.46973 * 54.99676 * 11 8 7 13 13 C 1.46896 * 111.00028 * 180.02562 * 12 11 8 14 14 C 1.50699 * 109.47190 * 180.02562 * 13 12 11 15 15 O 1.21291 * 119.99912 * 0.02562 * 14 13 12 16 16 N 1.34769 * 119.99930 * 179.97438 * 14 13 12 17 17 C 1.37099 * 119.99971 * 179.97438 * 16 14 13 18 18 H 1.07997 * 119.99994 * 0.02562 * 17 16 14 19 19 C 1.38956 * 120.00034 * 180.02562 * 17 16 14 20 20 N 1.31413 * 119.99972 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00014 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46967 * 90.00109 * 21 19 17 23 23 H 1.48494 * 109.47426 * 210.00033 * 21 19 17 24 24 H 1.48501 * 109.47336 * 330.00555 * 21 19 17 25 25 N 1.46500 * 109.46739 * 119.99450 * 2 1 3 26 26 C 1.36880 * 126.39645 * 239.70932 * 25 2 1 27 27 C 1.34676 * 106.81958 * 179.84724 * 26 25 2 28 28 N 1.34127 * 108.01716 * 0.42537 * 27 26 25 29 29 C 1.30507 * 109.25557 * 359.72985 * 28 27 26 30 30 H 1.09001 * 109.46850 * 60.00183 * 1 2 3 31 31 H 1.08992 * 109.46928 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46842 * 300.00388 * 1 2 3 33 33 H 1.08998 * 109.47508 * 304.99963 * 4 2 1 34 34 H 1.09002 * 109.47337 * 185.00248 * 4 2 1 35 35 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 36 36 H 1.08995 * 109.47098 * 60.00065 * 10 8 7 37 37 H 1.09003 * 109.47054 * 179.97438 * 10 8 7 38 38 H 1.08996 * 109.47245 * 299.99926 * 10 8 7 39 39 H 1.08997 * 109.47038 * 174.99692 * 11 8 7 40 40 H 1.08999 * 109.47047 * 295.00318 * 11 8 7 41 41 H 1.00906 * 110.99926 * 56.04584 * 12 11 8 42 42 H 1.09001 * 109.46867 * 300.00094 * 13 12 11 43 43 H 1.08992 * 109.47029 * 60.00008 * 13 12 11 44 44 H 0.97002 * 120.00702 * 359.97438 * 16 14 13 45 45 H 0.96998 * 119.99654 * 179.97438 * 20 19 17 46 46 H 1.08000 * 126.59123 * 359.97438 * 26 25 2 47 47 H 1.08000 * 125.98942 * 180.12350 * 27 26 25 48 48 H 1.08001 * 125.64863 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6414 0.0568 -2.4766 6 8 1.0110 1.0868 -2.3633 7 7 1.9845 -0.3922 -3.7001 8 6 1.6022 0.3675 -4.8930 9 1 0.6258 0.8254 -4.7346 10 6 2.6408 1.4594 -5.1568 11 6 1.5347 -0.5739 -6.0972 12 7 0.6267 -1.6889 -5.7969 13 6 0.5373 -2.6158 -6.9330 14 6 -0.4013 -3.7434 -6.5887 15 8 -0.9429 -3.7719 -5.5038 16 7 -0.6397 -4.7197 -7.4867 17 6 -1.4931 -5.7458 -7.1734 18 1 -1.9747 -5.7717 -6.2071 19 6 -1.7385 -6.7527 -8.0991 20 7 -1.1521 -6.7216 -9.2747 21 14 -2.9008 -8.1512 -7.6718 22 1 -4.2831 -7.7864 -8.0738 23 1 -2.4834 -9.3799 -8.3938 24 1 -2.8601 -8.3991 -6.2082 25 7 2.0183 -0.6905 1.1963 26 6 2.8130 -0.1568 2.1747 27 6 3.0185 -1.1292 3.0834 28 7 2.3748 -2.2296 2.6664 29 6 1.7734 -1.9742 1.5366 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6054 -1.7199 -1.2950 34 1 3.1264 -0.7996 -1.2055 35 1 2.4883 -1.2162 -3.7906 36 1 3.6172 1.0015 -5.3152 37 1 2.3566 2.0244 -6.0446 38 1 2.6889 2.1301 -4.2989 39 1 1.1649 -0.0278 -6.9650 40 1 2.5302 -0.9634 -6.3101 41 1 -0.2866 -1.3505 -5.5331 42 1 0.1608 -2.0841 -7.8069 43 1 1.5259 -3.0193 -7.1513 44 1 -0.2074 -4.6964 -8.3548 45 1 -1.3231 -7.4246 -9.9207 46 1 3.1991 0.8511 2.2119 47 1 3.6034 -1.0402 3.9869 48 1 1.1789 -2.6737 0.9678 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754286065.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:50 Heat of formation + Delta-G solvation = -14.731031 kcal Electronic energy + Delta-G solvation = -28560.315128 eV Core-core repulsion = 24458.203881 eV Total energy + Delta-G solvation = -4102.111247 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.27941 -40.16088 -38.40383 -37.06777 -35.71339 -34.37981 -33.73531 -31.73627 -31.26523 -30.80405 -29.39486 -28.09037 -27.68721 -25.10849 -23.83886 -23.27551 -21.77107 -21.46254 -20.75636 -20.14092 -19.30266 -17.96012 -17.88931 -16.94702 -16.60706 -15.93937 -15.88632 -15.46889 -15.17814 -14.76540 -14.64717 -14.54530 -14.14638 -14.04606 -13.93095 -13.79187 -13.56929 -13.50819 -13.26248 -13.08191 -12.67584 -12.61097 -12.24092 -12.04492 -11.87702 -11.77987 -11.60409 -11.57368 -11.52867 -11.08446 -11.05610 -10.43160 -10.26790 -10.13226 -10.04918 -9.80637 -9.56161 -9.19786 -8.69071 -8.56426 -8.19627 -8.02032 -6.46974 -3.87998 1.87767 2.38239 2.47009 3.03421 3.11611 3.14343 3.23663 3.29385 3.83970 3.97531 4.12209 4.21988 4.36959 4.52573 4.58004 4.65926 4.71329 4.84505 4.96042 5.01856 5.11096 5.15065 5.18255 5.20771 5.25079 5.35464 5.42340 5.45420 5.47937 5.53608 5.58552 5.69641 5.78200 5.87250 5.91641 5.95980 6.13457 6.18056 6.35715 6.56460 7.00430 7.04158 7.36227 7.49152 7.50319 7.92752 8.00498 8.04523 8.55015 9.12455 9.48202 9.99112 10.70597 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010481 B = 0.002274 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.799171 B =12309.622709 C =14441.908582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.151 3.849 3 H 0.107 0.893 4 C -0.155 4.155 5 C 0.524 3.476 6 O -0.547 6.547 7 N -0.703 5.703 8 C 0.145 3.855 9 H 0.087 0.913 10 C -0.161 4.161 11 C 0.047 3.953 12 N -0.667 5.667 13 C 0.050 3.950 14 C 0.439 3.561 15 O -0.584 6.584 16 N -0.563 5.563 17 C -0.300 4.300 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.901 5.901 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.269 1.269 25 N -0.454 5.454 26 C -0.058 4.058 27 C -0.034 4.034 28 N -0.497 5.497 29 C 0.185 3.815 30 H 0.099 0.901 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.407 0.593 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.044 0.956 40 H 0.077 0.923 41 H 0.351 0.649 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.171 0.829 47 H 0.167 0.833 48 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.775 16.755 11.167 22.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.048 3.952 3 H 0.125 0.875 4 C -0.196 4.196 5 C 0.310 3.690 6 O -0.425 6.425 7 N -0.353 5.353 8 C 0.040 3.960 9 H 0.105 0.895 10 C -0.220 4.220 11 C -0.083 4.083 12 N -0.299 5.299 13 C -0.082 4.082 14 C 0.225 3.775 15 O -0.468 6.468 16 N -0.199 5.199 17 C -0.430 4.430 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.542 5.542 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 N -0.137 5.137 26 C -0.191 4.191 27 C -0.182 4.182 28 N -0.215 5.215 29 C -0.098 4.098 30 H 0.118 0.882 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.126 0.874 34 H 0.118 0.882 35 H 0.242 0.758 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.096 0.904 41 H 0.170 0.830 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.189 0.811 47 H 0.184 0.816 48 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 10.348 16.271 12.407 22.930 hybrid contribution -0.479 0.087 -1.671 1.740 sum 9.869 16.358 10.737 21.915 Atomic orbital electron populations 1.22307 0.92175 1.03445 1.04611 1.21137 0.96402 0.96586 0.81083 0.87494 1.22013 1.03736 1.01482 0.92336 1.20113 0.79045 0.85335 0.84546 1.90678 1.40335 1.24869 1.86666 1.45809 1.57176 1.27402 1.04942 1.20964 0.99284 0.91525 0.84209 0.89453 1.22139 0.99000 0.98551 1.02319 1.22321 0.98660 0.91912 0.95434 1.60068 1.16580 1.16258 1.37040 1.21678 1.00450 0.94225 0.91873 1.19777 0.86500 0.85034 0.86236 1.90525 1.54270 1.78405 1.23584 1.41867 1.41259 1.21210 1.15571 1.19696 1.21101 1.00145 1.02015 0.87917 1.25274 0.98406 0.99158 0.95091 1.69609 1.43426 1.35054 1.06148 0.85854 0.79807 0.79823 0.78804 1.20400 1.20884 1.19355 1.45810 1.37743 1.11519 1.18588 1.22747 1.02513 1.01333 0.92523 1.22302 1.04806 0.89737 1.01325 1.70327 1.12482 1.28140 1.10584 1.24978 1.03591 0.85364 0.95818 0.88244 0.91828 0.91998 0.87438 0.88221 0.75750 0.92299 0.91517 0.91913 0.93811 0.90422 0.82983 0.93821 0.89589 0.77472 0.91828 0.81137 0.81566 0.78065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 8.99 37.16 0.33 -1.18 16 2 C 0.15 1.24 2.70 -67.93 -0.18 1.06 16 3 H 0.11 0.87 7.90 -51.93 -0.41 0.46 16 4 C -0.16 -1.21 5.17 -27.89 -0.14 -1.35 16 5 C 0.52 5.22 7.51 -10.98 -0.08 5.13 16 6 O -0.55 -6.88 13.63 5.55 0.08 -6.80 16 7 N -0.70 -6.51 4.80 -53.81 -0.26 -6.77 16 8 C 0.15 1.36 2.81 -67.93 -0.19 1.17 16 9 H 0.09 0.97 7.58 -51.93 -0.39 0.58 16 10 C -0.16 -1.25 9.48 37.16 0.35 -0.90 16 11 C 0.05 0.46 5.24 -3.82 -0.02 0.44 16 12 N -0.67 -9.28 5.85 -115.06 -0.67 -9.95 16 13 C 0.05 0.80 6.17 -4.98 -0.03 0.77 16 14 C 0.44 9.85 7.82 -10.99 -0.09 9.76 16 15 O -0.58 -15.16 15.78 5.55 0.09 -15.08 16 16 N -0.56 -13.78 5.29 -10.96 -0.06 -13.84 16 17 C -0.30 -8.18 9.68 -14.93 -0.14 -8.33 16 18 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 19 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 20 N -0.90 -24.04 13.05 55.50 0.72 -23.32 16 21 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 25 N -0.45 -4.14 2.62 -111.46 -0.29 -4.43 16 26 C -0.06 -0.51 11.54 -16.56 -0.19 -0.71 16 27 C -0.03 -0.35 11.87 -17.81 -0.21 -0.56 16 28 N -0.50 -6.29 11.25 -14.66 -0.16 -6.45 16 29 C 0.18 1.95 11.65 -90.37 -1.05 0.90 16 30 H 0.10 1.06 5.95 -51.93 -0.31 0.75 16 31 H 0.06 0.56 7.95 -51.93 -0.41 0.15 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.11 0.82 8.08 -51.93 -0.42 0.40 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.41 3.45 8.60 -40.82 -0.35 3.10 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.35 5.38 8.43 -39.29 -0.33 5.05 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.39 9.17 7.90 -40.82 -0.32 8.85 16 45 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 46 H 0.17 1.02 8.06 -52.49 -0.42 0.59 16 47 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 48 H 0.20 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 404.57 15.07 6.10 6.10 Total: -1.00 -33.46 404.57 -8.77 -42.23 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: -7.53 Total: 15.91 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -1.75 Total: 6.70 kcal Atomic # 7 Polarization: -64.04 SS G_CDS: -0.72 Total: -64.76 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: 0.16 Total: -21.88 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.46 -8.77 -42.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754286065.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.500 kcal (2) G-P(sol) polarization free energy of solvation -33.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds