Wall clock time and date at job start Tue Mar 31 2020 19:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.46547 * 2 1 4 4 C 1.52990 * 109.46971 * 239.99447 * 2 1 3 5 5 C 1.50703 * 109.47398 * 65.00163 * 4 2 1 6 6 O 1.21283 * 119.99488 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00290 * 180.02562 * 5 4 2 8 8 C 1.46498 * 119.99828 * 180.27728 * 7 5 4 9 9 H 1.08995 * 109.47013 * 324.72129 * 8 7 5 10 10 C 1.52999 * 109.47257 * 84.72116 * 8 7 5 11 11 C 1.53004 * 109.47065 * 204.72115 * 8 7 5 12 12 N 1.46903 * 109.46973 * 54.99676 * 11 8 7 13 13 C 1.46896 * 111.00028 * 180.02562 * 12 11 8 14 14 C 1.50699 * 109.47190 * 180.02562 * 13 12 11 15 15 O 1.21291 * 119.99912 * 0.02562 * 14 13 12 16 16 N 1.34769 * 119.99930 * 179.97438 * 14 13 12 17 17 C 1.37099 * 119.99971 * 179.97438 * 16 14 13 18 18 H 1.07997 * 119.99994 * 0.02562 * 17 16 14 19 19 C 1.38956 * 120.00034 * 180.02562 * 17 16 14 20 20 N 1.31413 * 119.99972 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00014 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46967 * 90.00109 * 21 19 17 23 23 H 1.48494 * 109.47426 * 210.00033 * 21 19 17 24 24 H 1.48501 * 109.47336 * 330.00555 * 21 19 17 25 25 N 1.46500 * 109.46739 * 119.99450 * 2 1 3 26 26 C 1.36880 * 126.39645 * 239.70932 * 25 2 1 27 27 C 1.34676 * 106.81958 * 179.84724 * 26 25 2 28 28 N 1.34127 * 108.01716 * 0.42537 * 27 26 25 29 29 C 1.30507 * 109.25557 * 359.72985 * 28 27 26 30 30 H 1.09001 * 109.46850 * 60.00183 * 1 2 3 31 31 H 1.08992 * 109.46928 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46842 * 300.00388 * 1 2 3 33 33 H 1.08998 * 109.47508 * 304.99963 * 4 2 1 34 34 H 1.09002 * 109.47337 * 185.00248 * 4 2 1 35 35 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 36 36 H 1.08995 * 109.47098 * 60.00065 * 10 8 7 37 37 H 1.09003 * 109.47054 * 179.97438 * 10 8 7 38 38 H 1.08996 * 109.47245 * 299.99926 * 10 8 7 39 39 H 1.08997 * 109.47038 * 174.99692 * 11 8 7 40 40 H 1.08999 * 109.47047 * 295.00318 * 11 8 7 41 41 H 1.00906 * 110.99926 * 56.04584 * 12 11 8 42 42 H 1.09001 * 109.46867 * 300.00094 * 13 12 11 43 43 H 1.08992 * 109.47029 * 60.00008 * 13 12 11 44 44 H 0.97002 * 120.00702 * 359.97438 * 16 14 13 45 45 H 0.96998 * 119.99654 * 179.97438 * 20 19 17 46 46 H 1.08000 * 126.59123 * 359.97438 * 26 25 2 47 47 H 1.08000 * 125.98942 * 180.12350 * 27 26 25 48 48 H 1.08001 * 125.64863 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6414 0.0568 -2.4766 6 8 1.0110 1.0868 -2.3633 7 7 1.9845 -0.3922 -3.7001 8 6 1.6022 0.3675 -4.8930 9 1 0.6258 0.8254 -4.7346 10 6 2.6408 1.4594 -5.1568 11 6 1.5347 -0.5739 -6.0972 12 7 0.6267 -1.6889 -5.7969 13 6 0.5373 -2.6158 -6.9330 14 6 -0.4013 -3.7434 -6.5887 15 8 -0.9429 -3.7719 -5.5038 16 7 -0.6397 -4.7197 -7.4867 17 6 -1.4931 -5.7458 -7.1734 18 1 -1.9747 -5.7717 -6.2071 19 6 -1.7385 -6.7527 -8.0991 20 7 -1.1521 -6.7216 -9.2747 21 14 -2.9008 -8.1512 -7.6718 22 1 -4.2831 -7.7864 -8.0738 23 1 -2.4834 -9.3799 -8.3938 24 1 -2.8601 -8.3991 -6.2082 25 7 2.0183 -0.6905 1.1963 26 6 2.8130 -0.1568 2.1747 27 6 3.0185 -1.1292 3.0834 28 7 2.3748 -2.2296 2.6664 29 6 1.7734 -1.9742 1.5366 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6054 -1.7199 -1.2950 34 1 3.1264 -0.7996 -1.2055 35 1 2.4883 -1.2162 -3.7906 36 1 3.6172 1.0015 -5.3152 37 1 2.3566 2.0244 -6.0446 38 1 2.6889 2.1301 -4.2989 39 1 1.1649 -0.0278 -6.9650 40 1 2.5302 -0.9634 -6.3101 41 1 -0.2866 -1.3505 -5.5331 42 1 0.1608 -2.0841 -7.8069 43 1 1.5259 -3.0193 -7.1513 44 1 -0.2074 -4.6964 -8.3548 45 1 -1.3231 -7.4246 -9.9207 46 1 3.1991 0.8511 2.2119 47 1 3.6034 -1.0402 3.9869 48 1 1.1789 -2.6737 0.9678 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754286065.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:50 Heat of formation + Delta-G solvation = -38.720452 kcal Electronic energy + Delta-G solvation = -28561.355388 eV Core-core repulsion = 24458.203881 eV Total energy + Delta-G solvation = -4103.151506 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.02213 -40.96199 -40.11944 -38.01450 -36.53908 -35.99544 -35.08325 -33.25566 -32.50581 -31.58123 -30.12291 -28.97216 -28.78255 -26.69098 -24.78162 -24.34854 -22.54870 -22.20033 -21.54934 -21.02824 -20.86629 -19.89762 -18.61662 -18.07383 -17.40332 -17.34358 -16.63813 -16.57210 -16.37535 -16.08229 -15.99238 -15.55790 -15.24627 -15.09940 -14.86819 -14.77929 -14.51458 -14.48659 -14.20192 -13.99495 -13.81882 -13.54170 -13.36045 -13.07952 -13.00484 -12.93360 -12.78054 -12.62972 -12.48145 -12.41247 -12.26284 -12.12729 -11.82623 -11.50123 -10.93663 -10.86336 -10.59372 -10.34261 -10.00772 -9.96602 -9.42476 -9.34453 -8.46757 -5.94959 1.15291 1.37711 1.42107 1.54222 1.62915 1.73328 2.06942 2.24788 2.28725 2.39357 2.91129 3.21098 3.44434 3.53011 3.68829 3.81511 3.88308 3.88886 4.04745 4.15208 4.20590 4.34335 4.39933 4.46434 4.52079 4.53691 4.60643 4.60900 4.66634 4.72201 4.76867 4.78734 4.83802 4.87476 5.07132 5.17845 5.30013 5.40799 5.41271 5.60659 5.86079 5.87401 6.09223 6.27182 6.33249 6.60565 6.61782 7.13454 7.16947 7.29320 7.57747 8.12970 8.70475 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010481 B = 0.002274 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.799171 B =12309.622709 C =14441.908582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.158 3.842 3 H 0.113 0.887 4 C -0.147 4.147 5 C 0.522 3.478 6 O -0.576 6.576 7 N -0.700 5.700 8 C 0.147 3.853 9 H 0.066 0.934 10 C -0.152 4.152 11 C 0.053 3.947 12 N -0.676 5.676 13 C 0.066 3.934 14 C 0.437 3.563 15 O -0.623 6.623 16 N -0.574 5.574 17 C -0.332 4.332 18 H 0.078 0.922 19 C -0.013 4.013 20 N -0.920 5.920 21 Si 0.990 3.010 22 H -0.272 1.272 23 H -0.271 1.271 24 H -0.273 1.273 25 N -0.450 5.450 26 C -0.050 4.050 27 C -0.057 4.057 28 N -0.536 5.536 29 C 0.174 3.826 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.413 0.587 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.059 0.941 40 H 0.096 0.904 41 H 0.340 0.660 42 H 0.065 0.935 43 H 0.109 0.891 44 H 0.397 0.603 45 H 0.277 0.723 46 H 0.201 0.799 47 H 0.182 0.818 48 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.076 17.430 10.456 23.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.055 3.945 3 H 0.131 0.869 4 C -0.187 4.187 5 C 0.308 3.692 6 O -0.456 6.456 7 N -0.350 5.350 8 C 0.042 3.958 9 H 0.084 0.916 10 C -0.211 4.211 11 C -0.077 4.077 12 N -0.308 5.308 13 C -0.067 4.067 14 C 0.225 3.775 15 O -0.509 6.509 16 N -0.212 5.212 17 C -0.461 4.461 18 H 0.096 0.904 19 C -0.213 4.213 20 N -0.561 5.561 21 Si 0.814 3.186 22 H -0.198 1.198 23 H -0.196 1.196 24 H -0.198 1.198 25 N -0.132 5.132 26 C -0.183 4.183 27 C -0.204 4.204 28 N -0.255 5.255 29 C -0.109 4.109 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.128 0.872 34 H 0.135 0.865 35 H 0.249 0.751 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.114 0.886 41 H 0.158 0.842 42 H 0.083 0.917 43 H 0.127 0.873 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.218 0.782 47 H 0.199 0.801 48 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 11.685 16.956 11.666 23.667 hybrid contribution -0.869 -0.046 -1.423 1.668 sum 10.815 16.910 10.243 22.536 Atomic orbital electron populations 1.22222 0.92965 1.03089 1.03783 1.21084 0.95682 0.96795 0.80953 0.86934 1.21953 1.04717 1.00974 0.91052 1.20424 0.78500 0.85052 0.85209 1.90671 1.41647 1.26240 1.87082 1.45834 1.56827 1.27517 1.04862 1.20935 0.98952 0.91829 0.84073 0.91550 1.22053 0.99009 0.97757 1.02282 1.22391 0.98454 0.90797 0.96015 1.60070 1.16542 1.17675 1.36523 1.21535 0.99601 0.92405 0.93109 1.20947 0.86051 0.85498 0.85039 1.90498 1.55789 1.79409 1.25244 1.41942 1.41486 1.21515 1.16226 1.19630 1.22782 1.02104 1.01626 0.90425 1.26002 0.99539 1.00866 0.94866 1.69663 1.44022 1.35801 1.06581 0.84968 0.78069 0.77302 0.78272 1.19752 1.19595 1.19811 1.45843 1.37514 1.11139 1.18752 1.23227 1.01349 1.02201 0.91541 1.22698 1.05479 0.89724 1.02528 1.70287 1.13784 1.29680 1.11786 1.25232 1.03759 0.86175 0.95717 0.89824 0.91963 0.91965 0.87230 0.86539 0.75123 0.90943 0.90320 0.93174 0.92341 0.88605 0.84190 0.91667 0.87286 0.76962 0.91343 0.78194 0.80073 0.76896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 8.99 71.99 0.65 -2.27 16 2 C 0.16 2.43 2.70 44.99 0.12 2.55 16 3 H 0.11 1.66 7.90 -2.39 -0.02 1.64 16 4 C -0.15 -2.10 5.17 29.85 0.15 -1.95 16 5 C 0.52 9.94 7.51 87.66 0.66 10.60 16 6 O -0.58 -14.34 13.63 -3.04 -0.04 -14.38 16 7 N -0.70 -12.01 4.80 -442.53 -2.12 -14.13 16 8 C 0.15 2.52 2.81 44.99 0.13 2.65 16 9 H 0.07 1.44 7.58 -2.39 -0.02 1.43 16 10 C -0.15 -2.02 9.48 71.98 0.68 -1.34 16 11 C 0.05 0.89 5.24 86.30 0.45 1.35 16 12 N -0.68 -17.70 5.85 -517.94 -3.03 -20.73 16 13 C 0.07 1.97 6.17 85.56 0.53 2.49 16 14 C 0.44 19.55 7.82 87.66 0.69 20.23 16 15 O -0.62 -32.91 15.78 -3.06 -0.05 -32.96 16 16 N -0.57 -28.31 5.29 -306.99 -1.62 -29.93 16 17 C -0.33 -18.41 9.68 84.04 0.81 -17.60 16 18 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 19 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 20 N -0.92 -48.63 13.05 21.67 0.28 -48.34 16 21 Si 0.99 42.33 29.55 68.60 2.03 44.36 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 23 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 25 N -0.45 -7.70 2.62 -506.54 -1.33 -9.02 16 26 C -0.05 -0.81 11.54 83.09 0.96 0.15 16 27 C -0.06 -1.15 11.87 83.53 0.99 -0.16 16 28 N -0.54 -13.50 11.25 -200.30 -2.25 -15.75 16 29 C 0.17 3.58 11.65 180.26 2.10 5.68 16 30 H 0.08 1.81 5.95 -2.39 -0.01 1.80 16 31 H 0.06 1.11 7.95 -2.39 -0.02 1.09 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.11 1.57 8.08 -2.39 -0.02 1.55 16 34 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.41 6.22 8.60 -92.71 -0.80 5.43 16 36 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 39 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.34 10.23 8.43 -89.69 -0.76 9.48 16 42 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 44 H 0.40 18.48 7.90 -92.71 -0.73 17.75 16 45 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 46 H 0.20 1.85 8.06 -2.91 -0.02 1.82 16 47 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 48 H 0.21 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -73.38 404.57 -0.04 -73.42 By element: Atomic # 1 Polarization: 46.58 SS G_CDS: -1.29 Total: 45.29 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: 9.39 Total: 22.18 kcal Atomic # 7 Polarization: -127.83 SS G_CDS: -10.07 Total: -137.91 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -0.09 Total: -47.34 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -73.38 -0.04 -73.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754286065.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.698 kcal (2) G-P(sol) polarization free energy of solvation -73.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds