Wall clock time and date at job start Tue Mar 31 2020 19:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47019 * 2 1 4 4 C 1.53000 * 109.47560 * 120.00731 * 2 1 3 5 5 N 1.46899 * 109.47242 * 175.00387 * 4 2 1 6 6 C 1.46897 * 110.99645 * 180.02562 * 5 4 2 7 7 C 1.50709 * 109.46934 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99691 * 359.97438 * 7 6 5 9 9 N 1.34770 * 120.00085 * 179.97438 * 7 6 5 10 10 C 1.37095 * 120.00456 * 180.02562 * 9 7 6 11 11 H 1.08004 * 119.99568 * 359.97438 * 10 9 7 12 12 C 1.38942 * 120.00683 * 180.02562 * 10 9 7 13 13 N 1.31416 * 120.00088 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00334 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46783 * 89.99980 * 14 12 10 16 16 H 1.48496 * 109.47154 * 209.99774 * 14 12 10 17 17 H 1.48497 * 109.47050 * 329.99836 * 14 12 10 18 18 N 1.46505 * 109.47222 * 240.00705 * 2 1 3 19 19 C 1.34779 * 119.99916 * 84.99172 * 18 2 1 20 20 O 1.21276 * 120.00264 * 0.02562 * 19 18 2 21 21 C 1.50700 * 119.99616 * 179.97438 * 19 18 2 22 22 C 1.53008 * 109.46781 * 180.02562 * 21 19 18 23 23 H 1.08996 * 109.47216 * 55.00115 * 22 21 19 24 24 C 1.53005 * 109.46912 * 295.00279 * 22 21 19 25 25 N 1.46500 * 109.46921 * 175.00576 * 22 21 19 26 26 C 1.36885 * 126.39286 * 239.99693 * 25 22 21 27 27 C 1.34665 * 106.81493 * 179.97438 * 26 25 22 28 28 N 1.34129 * 108.02445 * 0.02562 * 27 26 25 29 29 C 1.30498 * 109.25189 * 359.97438 * 28 27 26 30 30 H 1.09004 * 109.47311 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47061 * 299.99507 * 1 2 3 32 32 H 1.08999 * 109.47844 * 59.99793 * 1 2 3 33 33 H 1.09000 * 109.46579 * 295.00136 * 4 2 1 34 34 H 1.08996 * 109.46973 * 54.99302 * 4 2 1 35 35 H 1.00896 * 111.00013 * 56.04402 * 5 4 2 36 36 H 1.08998 * 109.47163 * 299.99221 * 6 5 4 37 37 H 1.09001 * 109.47320 * 59.99722 * 6 5 4 38 38 H 0.97002 * 120.00193 * 359.97438 * 9 7 6 39 39 H 0.96991 * 120.00618 * 179.97438 * 13 12 10 40 40 H 0.96999 * 120.00036 * 265.00176 * 18 2 1 41 41 H 1.08997 * 109.47037 * 60.00964 * 21 19 18 42 42 H 1.08993 * 109.47581 * 300.00233 * 21 19 18 43 43 H 1.08996 * 109.47046 * 299.99941 * 24 22 21 44 44 H 1.08991 * 109.47042 * 60.00040 * 24 22 21 45 45 H 1.09000 * 109.46506 * 180.02562 * 24 22 21 46 46 H 1.07999 * 126.59054 * 359.73997 * 26 25 22 47 47 H 1.08008 * 125.98738 * 179.97438 * 27 26 25 48 48 H 1.08006 * 125.64605 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5041 -0.8267 1.1902 6 6 4.0303 -1.5160 2.3759 7 6 5.5317 -1.6055 2.2799 8 8 6.1065 -1.1411 1.3181 9 7 6.2354 -2.2015 3.2626 10 6 7.6012 -2.2824 3.1756 11 1 8.1132 -1.8689 2.3192 12 6 8.3268 -2.8973 4.1885 13 7 7.7039 -3.4009 5.2303 14 14 10.1878 -3.0082 4.0695 15 1 10.7963 -1.8096 4.7006 16 1 10.6568 -4.2295 4.7719 17 1 10.5894 -3.0735 2.6413 18 7 2.0183 -0.6905 -1.1963 19 6 2.1469 -0.0180 -2.3572 20 8 1.8587 1.1588 -2.4115 21 6 2.6498 -0.7282 -3.5876 22 6 2.7015 0.2552 -4.7586 23 1 3.3028 1.1206 -4.4801 24 6 1.2825 0.7104 -5.1055 25 7 3.3016 -0.4023 -5.9222 26 6 4.4385 -0.0137 -6.5781 27 6 4.6291 -0.8919 -7.5810 28 7 3.6354 -1.7918 -7.5392 29 6 2.8366 -1.5049 -6.5479 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3635 0.5138 -0.8899 33 1 1.7516 -0.1585 2.1369 34 1 1.6054 -1.7199 1.2950 35 1 3.9279 0.0826 1.0823 36 1 3.7558 -0.9591 3.2717 37 1 3.6095 -2.5201 2.4290 38 1 5.7757 -2.5725 4.0320 39 1 8.2103 -3.8305 5.9372 40 1 2.2490 -1.6316 -1.1529 41 1 1.9776 -1.5504 -3.8327 42 1 3.6491 -1.1199 -3.3981 43 1 0.6813 -0.1550 -5.3840 44 1 0.8361 1.1995 -4.2398 45 1 1.3195 1.4106 -5.9400 46 1 5.0607 0.8362 -6.3395 47 1 5.4396 -0.8741 -8.2947 48 1 1.9499 -2.0574 -6.2739 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754286066.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:53 Heat of formation + Delta-G solvation = -14.738207 kcal Electronic energy + Delta-G solvation = -28518.120496 eV Core-core repulsion = 24416.008938 eV Total energy + Delta-G solvation = -4102.111558 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.27258 -40.16261 -38.40490 -37.07091 -35.72332 -34.38035 -33.73683 -31.73430 -31.26608 -30.82125 -29.38787 -28.12102 -27.68797 -25.11483 -23.86424 -23.27229 -21.76537 -21.45573 -20.75159 -20.15267 -19.30419 -17.96289 -17.88912 -16.95690 -16.64514 -15.99854 -15.75641 -15.46717 -15.14682 -14.86917 -14.64208 -14.56326 -14.16948 -14.06255 -13.92635 -13.66183 -13.61122 -13.53086 -13.22988 -13.15858 -12.71998 -12.65252 -12.18610 -12.08143 -11.87670 -11.83079 -11.63296 -11.59158 -11.53515 -11.08567 -11.05633 -10.43285 -10.26932 -10.13807 -10.04232 -9.79859 -9.56356 -9.20374 -8.67543 -8.56475 -8.19632 -8.02123 -6.47036 -3.88139 1.89311 2.42296 2.43373 3.04171 3.11888 3.14171 3.23401 3.29219 3.83919 3.97481 4.09651 4.21902 4.38846 4.50689 4.53960 4.66428 4.72229 4.83522 4.95506 5.01184 5.05589 5.14751 5.16606 5.20703 5.28318 5.35480 5.39713 5.44523 5.46722 5.50392 5.57484 5.69496 5.78093 5.82522 5.87285 5.93813 6.12665 6.18030 6.35300 6.58214 7.00812 7.04276 7.36292 7.49043 7.50217 7.92274 8.00404 8.04531 8.54994 9.12399 9.48096 9.99114 10.70577 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010117 B = 0.002289 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.060783 B =12227.336978 C =14553.966731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.087 0.913 4 C 0.047 3.953 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.439 3.561 8 O -0.584 6.584 9 N -0.563 5.563 10 C -0.300 4.300 11 H 0.103 0.897 12 C 0.023 3.977 13 N -0.901 5.901 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.269 1.269 18 N -0.703 5.703 19 C 0.524 3.476 20 O -0.547 6.547 21 C -0.155 4.155 22 C 0.149 3.851 23 H 0.110 0.890 24 C -0.165 4.165 25 N -0.453 5.453 26 C -0.052 4.052 27 C -0.034 4.034 28 N -0.497 5.497 29 C 0.179 3.821 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.351 0.649 36 H 0.044 0.956 37 H 0.086 0.914 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.407 0.593 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.058 0.942 44 H 0.098 0.902 45 H 0.061 0.939 46 H 0.173 0.827 47 H 0.168 0.832 48 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.761 5.307 -13.847 22.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.105 0.895 4 C -0.083 4.083 5 N -0.300 5.300 6 C -0.082 4.082 7 C 0.224 3.776 8 O -0.468 6.468 9 N -0.199 5.199 10 C -0.430 4.430 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 N -0.353 5.353 19 C 0.310 3.690 20 O -0.425 6.425 21 C -0.195 4.195 22 C 0.046 3.954 23 H 0.128 0.872 24 C -0.223 4.223 25 N -0.136 5.136 26 C -0.185 4.185 27 C -0.182 4.182 28 N -0.215 5.215 29 C -0.103 4.103 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.170 0.830 36 H 0.062 0.938 37 H 0.104 0.896 38 H 0.225 0.775 39 H 0.082 0.918 40 H 0.242 0.758 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.077 0.923 44 H 0.116 0.884 45 H 0.081 0.919 46 H 0.190 0.810 47 H 0.185 0.815 48 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -16.649 5.196 -15.146 23.099 hybrid contribution 0.851 0.452 1.958 2.182 sum -15.798 5.648 -13.188 21.340 Atomic orbital electron populations 1.22135 0.94869 1.02284 1.02675 1.20966 0.93624 0.97498 0.83914 0.89482 1.22321 0.89598 1.00746 0.95669 1.60063 1.02985 1.26841 1.40099 1.21680 0.95377 0.99837 0.91322 1.19785 0.87976 0.84710 0.85087 1.90528 1.71107 1.51947 1.33204 1.41865 1.07440 1.50834 1.19774 1.19695 0.81475 1.35226 1.06570 0.87935 1.25268 1.00756 0.96669 0.95208 1.69605 1.36762 1.38491 1.09406 0.85856 0.82108 0.77679 0.78657 1.20391 1.20871 1.19362 1.45812 1.66144 1.14553 1.08825 1.20112 0.77323 0.87126 0.84468 1.90675 1.50932 1.15833 1.85107 1.22006 1.04950 0.99556 0.93005 1.21148 0.96780 0.95130 0.82325 0.87222 1.22288 0.93989 1.02067 1.03935 1.45769 1.20676 1.22945 1.24244 1.22809 0.92573 1.04491 0.98638 1.22300 1.00358 0.94577 1.00920 1.70295 1.05081 1.26826 1.19328 1.24841 1.01819 0.90277 0.93346 0.92272 0.91531 0.91892 0.93813 0.90404 0.82993 0.93800 0.89579 0.77467 0.91820 0.75753 0.88128 0.87528 0.92260 0.88368 0.91944 0.80956 0.81468 0.78368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.48 37.15 0.35 -0.87 16 2 C 0.15 1.36 2.81 -67.93 -0.19 1.17 16 3 H 0.09 0.98 7.58 -51.93 -0.39 0.58 16 4 C 0.05 0.46 5.24 -3.82 -0.02 0.44 16 5 N -0.67 -9.42 5.85 -115.06 -0.67 -10.09 16 6 C 0.05 0.81 6.17 -4.97 -0.03 0.78 16 7 C 0.44 9.94 7.82 -10.98 -0.09 9.85 16 8 O -0.58 -15.35 15.78 5.55 0.09 -15.26 16 9 N -0.56 -13.87 5.29 -10.96 -0.06 -13.93 16 10 C -0.30 -8.23 9.68 -14.94 -0.14 -8.38 16 11 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.13 13.05 55.50 0.72 -23.41 16 14 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 15 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 18 N -0.70 -6.52 4.80 -53.81 -0.26 -6.78 16 19 C 0.52 5.23 7.51 -10.98 -0.08 5.14 16 20 O -0.55 -6.88 13.63 5.56 0.08 -6.80 16 21 C -0.15 -1.21 5.17 -27.88 -0.14 -1.35 16 22 C 0.15 1.23 2.70 -67.92 -0.18 1.05 16 23 H 0.11 1.00 7.89 -51.93 -0.41 0.59 16 24 C -0.17 -1.24 8.98 37.16 0.33 -0.91 16 25 N -0.45 -4.20 2.62 -111.45 -0.29 -4.49 16 26 C -0.05 -0.50 11.54 -16.56 -0.19 -0.70 16 27 C -0.03 -0.37 11.87 -17.81 -0.21 -0.58 16 28 N -0.50 -6.19 11.25 -14.66 -0.16 -6.36 16 29 C 0.18 1.77 11.65 -90.38 -1.05 0.72 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.35 5.47 8.43 -39.29 -0.33 5.14 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.39 9.22 7.90 -40.82 -0.32 8.89 16 39 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.41 3.46 8.60 -40.82 -0.35 3.11 16 41 H 0.10 0.57 8.08 -51.93 -0.42 0.15 16 42 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.06 0.37 7.95 -51.93 -0.41 -0.04 16 44 H 0.10 0.87 5.95 -51.93 -0.31 0.56 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.17 1.27 8.06 -52.49 -0.42 0.84 16 47 H 0.17 1.46 8.06 -52.48 -0.42 1.04 16 48 H 0.20 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 404.58 15.07 6.10 6.10 Total: -1.00 -33.87 404.58 -8.77 -42.63 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -7.53 Total: 15.74 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -1.75 Total: 6.87 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: -0.72 Total: -65.06 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: 0.16 Total: -22.06 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.87 -8.77 -42.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754286066.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.894 kcal (2) G-P(sol) polarization free energy of solvation -33.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds