Wall clock time and date at job start Tue Mar 31 2020 19:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47019 * 2 1 4 4 C 1.53000 * 109.47560 * 120.00731 * 2 1 3 5 5 N 1.46899 * 109.47242 * 175.00387 * 4 2 1 6 6 C 1.46897 * 110.99645 * 180.02562 * 5 4 2 7 7 C 1.50709 * 109.46934 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99691 * 359.97438 * 7 6 5 9 9 N 1.34770 * 120.00085 * 179.97438 * 7 6 5 10 10 C 1.37095 * 120.00456 * 180.02562 * 9 7 6 11 11 H 1.08004 * 119.99568 * 359.97438 * 10 9 7 12 12 C 1.38942 * 120.00683 * 180.02562 * 10 9 7 13 13 N 1.31416 * 120.00088 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00334 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46783 * 89.99980 * 14 12 10 16 16 H 1.48496 * 109.47154 * 209.99774 * 14 12 10 17 17 H 1.48497 * 109.47050 * 329.99836 * 14 12 10 18 18 N 1.46505 * 109.47222 * 240.00705 * 2 1 3 19 19 C 1.34779 * 119.99916 * 84.99172 * 18 2 1 20 20 O 1.21276 * 120.00264 * 0.02562 * 19 18 2 21 21 C 1.50700 * 119.99616 * 179.97438 * 19 18 2 22 22 C 1.53008 * 109.46781 * 180.02562 * 21 19 18 23 23 H 1.08996 * 109.47216 * 55.00115 * 22 21 19 24 24 C 1.53005 * 109.46912 * 295.00279 * 22 21 19 25 25 N 1.46500 * 109.46921 * 175.00576 * 22 21 19 26 26 C 1.36885 * 126.39286 * 239.99693 * 25 22 21 27 27 C 1.34665 * 106.81493 * 179.97438 * 26 25 22 28 28 N 1.34129 * 108.02445 * 0.02562 * 27 26 25 29 29 C 1.30498 * 109.25189 * 359.97438 * 28 27 26 30 30 H 1.09004 * 109.47311 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47061 * 299.99507 * 1 2 3 32 32 H 1.08999 * 109.47844 * 59.99793 * 1 2 3 33 33 H 1.09000 * 109.46579 * 295.00136 * 4 2 1 34 34 H 1.08996 * 109.46973 * 54.99302 * 4 2 1 35 35 H 1.00896 * 111.00013 * 56.04402 * 5 4 2 36 36 H 1.08998 * 109.47163 * 299.99221 * 6 5 4 37 37 H 1.09001 * 109.47320 * 59.99722 * 6 5 4 38 38 H 0.97002 * 120.00193 * 359.97438 * 9 7 6 39 39 H 0.96991 * 120.00618 * 179.97438 * 13 12 10 40 40 H 0.96999 * 120.00036 * 265.00176 * 18 2 1 41 41 H 1.08997 * 109.47037 * 60.00964 * 21 19 18 42 42 H 1.08993 * 109.47581 * 300.00233 * 21 19 18 43 43 H 1.08996 * 109.47046 * 299.99941 * 24 22 21 44 44 H 1.08991 * 109.47042 * 60.00040 * 24 22 21 45 45 H 1.09000 * 109.46506 * 180.02562 * 24 22 21 46 46 H 1.07999 * 126.59054 * 359.73997 * 26 25 22 47 47 H 1.08008 * 125.98738 * 179.97438 * 27 26 25 48 48 H 1.08006 * 125.64605 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5041 -0.8267 1.1902 6 6 4.0303 -1.5160 2.3759 7 6 5.5317 -1.6055 2.2799 8 8 6.1065 -1.1411 1.3181 9 7 6.2354 -2.2015 3.2626 10 6 7.6012 -2.2824 3.1756 11 1 8.1132 -1.8689 2.3192 12 6 8.3268 -2.8973 4.1885 13 7 7.7039 -3.4009 5.2303 14 14 10.1878 -3.0082 4.0695 15 1 10.7963 -1.8096 4.7006 16 1 10.6568 -4.2295 4.7719 17 1 10.5894 -3.0735 2.6413 18 7 2.0183 -0.6905 -1.1963 19 6 2.1469 -0.0180 -2.3572 20 8 1.8587 1.1588 -2.4115 21 6 2.6498 -0.7282 -3.5876 22 6 2.7015 0.2552 -4.7586 23 1 3.3028 1.1206 -4.4801 24 6 1.2825 0.7104 -5.1055 25 7 3.3016 -0.4023 -5.9222 26 6 4.4385 -0.0137 -6.5781 27 6 4.6291 -0.8919 -7.5810 28 7 3.6354 -1.7918 -7.5392 29 6 2.8366 -1.5049 -6.5479 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3635 0.5138 -0.8899 33 1 1.7516 -0.1585 2.1369 34 1 1.6054 -1.7199 1.2950 35 1 3.9279 0.0826 1.0823 36 1 3.7558 -0.9591 3.2717 37 1 3.6095 -2.5201 2.4290 38 1 5.7757 -2.5725 4.0320 39 1 8.2103 -3.8305 5.9372 40 1 2.2490 -1.6316 -1.1529 41 1 1.9776 -1.5504 -3.8327 42 1 3.6491 -1.1199 -3.3981 43 1 0.6813 -0.1550 -5.3840 44 1 0.8361 1.1995 -4.2398 45 1 1.3195 1.4106 -5.9400 46 1 5.0607 0.8362 -6.3395 47 1 5.4396 -0.8741 -8.2947 48 1 1.9499 -2.0574 -6.2739 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754286066.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:52 Heat of formation + Delta-G solvation = -39.178479 kcal Electronic energy + Delta-G solvation = -28519.180306 eV Core-core repulsion = 24416.008938 eV Total energy + Delta-G solvation = -4103.171368 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.02022 -40.96343 -40.13392 -38.01683 -36.53752 -36.00838 -35.09058 -33.26903 -32.50352 -31.57980 -30.13611 -28.98415 -28.74382 -26.70116 -24.79444 -24.33474 -22.53984 -22.22462 -21.54474 -21.04125 -20.86741 -19.91073 -18.61035 -18.08647 -17.43452 -17.36434 -16.67722 -16.50931 -16.36876 -16.05742 -15.93734 -15.66211 -15.33880 -15.07651 -14.82399 -14.78004 -14.61215 -14.37577 -14.16768 -13.98549 -13.85974 -13.55491 -13.40682 -13.08739 -12.99987 -12.81665 -12.77806 -12.66457 -12.50189 -12.42674 -12.24364 -12.13550 -11.82309 -11.51456 -10.94998 -10.85679 -10.57876 -10.35828 -10.02035 -9.97046 -9.44050 -9.35512 -8.47810 -5.96258 1.15443 1.36860 1.41199 1.53401 1.65527 1.71145 2.05613 2.24523 2.27883 2.39820 2.90343 3.19920 3.43289 3.51835 3.72159 3.80621 3.87875 3.88445 4.04524 4.16853 4.20491 4.33589 4.39607 4.45907 4.52833 4.53269 4.59952 4.60283 4.66579 4.73998 4.77691 4.79896 4.86039 4.88651 5.08148 5.19807 5.31478 5.39102 5.40046 5.60879 5.83099 5.86483 6.08272 6.29828 6.31725 6.59453 6.61857 7.12277 7.15665 7.29443 7.56380 8.11764 8.69467 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010117 B = 0.002289 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.060783 B =12227.336978 C =14553.966731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.147 3.853 3 H 0.065 0.935 4 C 0.052 3.948 5 N -0.677 5.677 6 C 0.066 3.934 7 C 0.436 3.564 8 O -0.624 6.624 9 N -0.574 5.574 10 C -0.333 4.333 11 H 0.077 0.923 12 C -0.012 4.012 13 N -0.920 5.920 14 Si 0.990 3.010 15 H -0.272 1.272 16 H -0.270 1.270 17 H -0.274 1.274 18 N -0.700 5.700 19 C 0.522 3.478 20 O -0.576 6.576 21 C -0.146 4.146 22 C 0.153 3.847 23 H 0.097 0.903 24 C -0.157 4.157 25 N -0.452 5.452 26 C -0.058 4.058 27 C -0.055 4.055 28 N -0.536 5.536 29 C 0.180 3.820 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.339 0.661 36 H 0.066 0.934 37 H 0.110 0.890 38 H 0.397 0.603 39 H 0.278 0.722 40 H 0.413 0.587 41 H 0.128 0.872 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.058 0.942 46 H 0.191 0.809 47 H 0.179 0.821 48 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.127 4.546 -13.216 22.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.042 3.958 3 H 0.083 0.917 4 C -0.077 4.077 5 N -0.309 5.309 6 C -0.066 4.066 7 C 0.224 3.776 8 O -0.511 6.511 9 N -0.211 5.211 10 C -0.462 4.462 11 H 0.095 0.905 12 C -0.212 4.212 13 N -0.561 5.561 14 Si 0.814 3.186 15 H -0.197 1.197 16 H -0.195 1.195 17 H -0.199 1.199 18 N -0.350 5.350 19 C 0.308 3.692 20 O -0.457 6.457 21 C -0.186 4.186 22 C 0.050 3.950 23 H 0.115 0.885 24 C -0.214 4.214 25 N -0.134 5.134 26 C -0.191 4.191 27 C -0.202 4.202 28 N -0.255 5.255 29 C -0.103 4.103 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.115 0.885 35 H 0.157 0.843 36 H 0.084 0.916 37 H 0.128 0.872 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.249 0.751 41 H 0.146 0.854 42 H 0.117 0.883 43 H 0.094 0.906 44 H 0.104 0.896 45 H 0.077 0.923 46 H 0.208 0.792 47 H 0.196 0.804 48 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -18.046 4.416 -14.489 23.560 hybrid contribution 1.224 0.728 1.744 2.251 sum -16.822 5.144 -12.745 21.723 Atomic orbital electron populations 1.22048 0.93070 1.03217 1.02690 1.20940 0.94866 0.96240 0.83771 0.91721 1.22400 0.86743 1.02157 0.96387 1.60069 1.05417 1.26153 1.39292 1.21540 0.90188 1.01841 0.93058 1.20966 0.90737 0.82386 0.83501 1.90500 1.72888 1.53084 1.34620 1.41938 1.06806 1.51754 1.20626 1.19626 0.83164 1.36862 1.06595 0.90501 1.25999 1.04744 0.95850 0.94603 1.69658 1.38215 1.38495 1.09684 0.84969 0.77108 0.78194 0.78342 1.19708 1.19517 1.19861 1.45836 1.65738 1.14769 1.08678 1.20426 0.76842 0.86810 0.85118 1.90669 1.52295 1.17126 1.85593 1.21952 1.04992 0.99876 0.91802 1.21114 0.96944 0.94770 0.82140 0.88469 1.22193 0.93510 1.02544 1.03182 1.45832 1.20502 1.22836 1.24255 1.23157 0.92864 1.04781 0.98325 1.22626 1.00817 0.94915 1.01849 1.70271 1.06266 1.28079 1.20916 1.25411 1.02103 0.90187 0.92556 0.90808 0.90397 0.93025 0.92342 0.88500 0.84271 0.91606 0.87225 0.76930 0.91300 0.75115 0.85390 0.88319 0.90569 0.89550 0.92306 0.79221 0.80389 0.75492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.48 71.98 0.68 -1.27 16 2 C 0.15 2.51 2.81 44.99 0.13 2.64 16 3 H 0.06 1.42 7.58 -2.39 -0.02 1.41 16 4 C 0.05 0.89 5.24 86.30 0.45 1.34 16 5 N -0.68 -18.01 5.85 -517.93 -3.03 -21.04 16 6 C 0.07 1.99 6.17 85.56 0.53 2.52 16 7 C 0.44 19.71 7.82 87.66 0.69 20.40 16 8 O -0.62 -33.42 15.78 -3.06 -0.05 -33.47 16 9 N -0.57 -28.47 5.29 -306.99 -1.62 -30.09 16 10 C -0.33 -18.58 9.68 84.04 0.81 -17.77 16 11 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 12 C -0.01 -0.64 5.50 84.92 0.47 -0.17 16 13 N -0.92 -48.73 13.05 21.66 0.28 -48.44 16 14 Si 0.99 42.44 29.55 68.60 2.03 44.47 16 15 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 16 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 18 N -0.70 -11.98 4.80 -442.54 -2.12 -14.10 16 19 C 0.52 9.96 7.51 87.66 0.66 10.62 16 20 O -0.58 -14.42 13.63 -3.02 -0.04 -14.46 16 21 C -0.15 -2.09 5.17 29.85 0.15 -1.94 16 22 C 0.15 2.39 2.70 45.00 0.12 2.52 16 23 H 0.10 1.78 7.89 -2.39 -0.02 1.76 16 24 C -0.16 -2.18 8.98 71.98 0.65 -1.53 16 25 N -0.45 -7.94 2.62 -506.53 -1.33 -9.27 16 26 C -0.06 -1.10 11.54 83.08 0.96 -0.14 16 27 C -0.06 -1.20 11.87 83.52 0.99 -0.21 16 28 N -0.54 -13.13 11.25 -200.31 -2.25 -15.38 16 29 C 0.18 3.32 11.65 180.26 2.10 5.41 16 30 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.10 1.34 8.14 -2.39 -0.02 1.33 16 35 H 0.34 10.41 8.43 -89.70 -0.76 9.65 16 36 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 38 H 0.40 18.58 7.90 -92.71 -0.73 17.84 16 39 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 40 H 0.41 6.19 8.60 -92.71 -0.80 5.40 16 41 H 0.13 1.12 8.08 -2.39 -0.02 1.10 16 42 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.08 0.79 7.95 -2.39 -0.02 0.77 16 44 H 0.09 1.47 5.95 -2.39 -0.01 1.46 16 45 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.19 2.71 8.06 -2.91 -0.02 2.69 16 47 H 0.18 3.16 8.06 -2.91 -0.02 3.14 16 48 H 0.23 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -74.56 404.58 -0.04 -74.60 By element: Atomic # 1 Polarization: 46.05 SS G_CDS: -1.29 Total: 44.76 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: 9.39 Total: 22.42 kcal Atomic # 7 Polarization: -128.25 SS G_CDS: -10.07 Total: -138.33 kcal Atomic # 8 Polarization: -47.84 SS G_CDS: -0.09 Total: -47.93 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -74.56 -0.04 -74.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754286066.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.425 kcal (2) G-P(sol) polarization free energy of solvation -74.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds