Wall clock time and date at job start Tue Mar 31 2020 19:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.53005 * 109.46736 * 240.00462 * 2 1 3 5 5 N 1.46902 * 109.46590 * 184.99881 * 4 2 1 6 6 C 1.46898 * 111.00283 * 293.95038 * 5 4 2 7 7 C 1.46906 * 110.99573 * 169.99897 * 5 4 2 8 8 C 1.50706 * 109.46929 * 190.00042 * 7 5 4 9 9 O 1.21290 * 119.99857 * 359.97438 * 8 7 5 10 10 N 1.34768 * 119.99753 * 179.97438 * 8 7 5 11 11 C 1.37101 * 120.00038 * 179.97438 * 10 8 7 12 12 H 1.08001 * 119.99491 * 0.02562 * 11 10 8 13 13 C 1.38949 * 120.00069 * 180.02562 * 11 10 8 14 14 N 1.31410 * 119.99778 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00023 * 0.02562 * 13 11 10 16 16 H 1.48508 * 109.47095 * 90.00021 * 15 13 11 17 17 H 1.48496 * 109.47068 * 209.99714 * 15 13 11 18 18 H 1.48499 * 109.47248 * 330.00028 * 15 13 11 19 19 N 1.46499 * 109.46968 * 120.00396 * 2 1 3 20 20 C 1.34770 * 120.00144 * 274.99576 * 19 2 1 21 21 O 1.21286 * 120.00034 * 0.02562 * 20 19 2 22 22 C 1.50703 * 120.00224 * 180.02562 * 20 19 2 23 23 C 1.53004 * 109.47209 * 180.02562 * 22 20 19 24 24 N 1.46494 * 109.47280 * 180.02562 * 23 22 20 25 25 C 1.34949 * 126.03789 * 124.99905 * 24 23 22 26 26 C 1.35319 * 107.74286 * 179.97438 * 25 24 23 27 27 C 1.39867 * 107.92217 * 0.02562 * 26 25 24 28 28 N 1.30835 * 108.20391 * 359.73718 * 27 26 25 29 29 H 1.08997 * 109.46857 * 59.99664 * 1 2 3 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46587 * 299.99622 * 1 2 3 32 32 H 1.08993 * 109.47005 * 65.00188 * 4 2 1 33 33 H 1.09000 * 109.47130 * 304.99423 * 4 2 1 34 34 H 1.08997 * 109.47334 * 296.05250 * 6 5 4 35 35 H 1.09000 * 109.46674 * 56.05127 * 6 5 4 36 36 H 1.08995 * 109.47296 * 176.04950 * 6 5 4 37 37 H 1.08998 * 109.47121 * 309.99709 * 7 5 4 38 38 H 1.09000 * 109.47141 * 69.99907 * 7 5 4 39 39 H 0.97005 * 120.00524 * 0.02562 * 10 8 7 40 40 H 0.97004 * 119.99786 * 180.02562 * 14 13 11 41 41 H 0.96997 * 119.99986 * 95.00047 * 19 2 1 42 42 H 1.08997 * 109.47165 * 300.00173 * 22 20 19 43 43 H 1.08996 * 109.47166 * 60.00410 * 22 20 19 44 44 H 1.09007 * 109.47084 * 300.00141 * 23 22 20 45 45 H 1.09003 * 109.47173 * 60.00131 * 23 22 20 46 46 H 1.07990 * 126.12473 * 359.95853 * 25 24 23 47 47 H 1.08001 * 126.03689 * 179.97438 * 26 25 24 48 48 H 1.08003 * 125.90069 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5040 -0.8266 -1.1905 6 6 4.1311 0.4994 -1.2721 7 6 4.0107 -1.7143 -2.2457 8 6 5.4725 -1.9937 -2.0081 9 8 6.0367 -1.5013 -1.0540 10 7 6.1526 -2.7905 -2.8558 11 6 7.4825 -3.0443 -2.6400 12 1 7.9849 -2.6059 -1.7904 13 6 8.1839 -3.8655 -3.5143 14 7 9.4585 -4.1091 -3.3071 15 14 7.3150 -4.6232 -4.9841 16 1 7.4240 -3.7086 -6.1491 17 1 7.9476 -5.9250 -5.3161 18 1 5.8828 -4.8381 -4.6558 19 7 2.0184 -0.6907 1.1961 20 6 2.1472 -0.0185 2.3571 21 8 1.8584 1.1582 2.4118 22 6 2.6500 -0.7288 3.5874 23 6 2.7008 0.2541 4.7589 24 7 3.1902 -0.4363 5.9547 25 6 4.2429 -0.0628 6.7121 26 6 4.3652 -0.9590 7.7186 27 6 3.3531 -1.9130 7.5709 28 7 2.6449 -1.5977 6.5170 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.7516 -0.1582 -2.1370 33 1 1.6054 -1.7198 -1.2953 34 1 3.9101 0.9468 -2.2411 35 1 3.7381 1.1364 -0.4797 36 1 5.2101 0.3988 -1.1559 37 1 3.4545 -2.6515 -2.2301 38 1 3.8857 -1.2336 -3.2160 39 1 5.7015 -3.1840 -3.6191 40 1 9.9483 -4.6821 -3.9177 41 1 2.2490 -1.6318 1.1525 42 1 1.9778 -1.5511 3.8324 43 1 3.6493 -1.1206 3.3978 44 1 3.3729 1.0767 4.5141 45 1 1.7013 0.6455 4.9484 46 1 4.8745 0.7969 6.5447 47 1 5.1129 -0.9412 8.4978 48 1 3.1829 -2.7611 8.2176 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754302818.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:57 Heat of formation + Delta-G solvation = 19.506037 kcal Electronic energy + Delta-G solvation = -28825.185685 eV Core-core repulsion = 24724.559069 eV Total energy + Delta-G solvation = -4100.626616 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.27404 -40.01703 -38.81991 -37.21097 -34.92400 -34.36969 -33.86971 -31.72654 -31.55641 -30.43227 -29.44254 -28.24838 -27.02866 -25.07922 -24.64972 -22.66152 -21.32546 -21.14745 -20.50367 -20.26546 -19.39174 -18.29531 -17.81983 -16.74209 -16.42622 -16.09619 -16.03894 -15.38724 -15.03093 -14.90016 -14.79907 -14.45465 -14.22869 -14.07251 -13.69377 -13.40279 -13.32749 -13.24458 -12.93022 -12.91513 -12.57946 -12.45772 -12.39081 -12.19048 -12.04824 -11.85669 -11.59153 -11.52705 -11.40556 -11.07189 -10.82678 -10.79513 -10.63357 -10.01458 -10.00113 -9.58492 -9.57869 -9.11296 -8.75828 -8.63938 -8.22538 -8.03741 -6.34716 -3.86299 1.74137 2.28134 2.56114 2.71072 2.98699 3.03076 3.11809 3.15283 3.69172 3.81645 4.06600 4.30501 4.52890 4.62703 4.67045 4.72541 4.77480 4.92441 5.00334 5.10729 5.14462 5.18388 5.27020 5.31301 5.37990 5.49362 5.50916 5.52734 5.59252 5.60716 5.64935 5.78529 5.81122 5.84649 5.85950 5.90413 5.98828 6.42172 6.48284 6.49312 6.83262 7.06512 7.20151 7.46429 7.54546 7.54657 8.10724 8.14838 8.56282 8.91576 9.38591 9.79334 10.78392 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010172 B = 0.002496 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.932424 B =11214.712211 C =13280.698153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.089 0.911 4 C 0.042 3.958 5 N -0.515 5.515 6 C 0.020 3.980 7 C 0.042 3.958 8 C 0.452 3.548 9 O -0.559 6.559 10 N -0.591 5.591 11 C -0.305 4.305 12 H 0.119 0.881 13 C 0.041 3.959 14 N -0.881 5.881 15 Si 0.880 3.120 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.270 1.270 19 N -0.702 5.702 20 C 0.524 3.476 21 O -0.554 6.554 22 C -0.154 4.154 23 C 0.152 3.848 24 N -0.372 5.372 25 C 0.057 3.943 26 C -0.278 4.278 27 C 0.043 3.957 28 N -0.298 5.298 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.016 0.984 35 H 0.061 0.939 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.049 0.951 39 H 0.370 0.630 40 H 0.274 0.726 41 H 0.407 0.593 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.092 0.908 46 H 0.174 0.826 47 H 0.146 0.854 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.864 6.202 11.124 21.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.042 3.958 3 H 0.107 0.893 4 C -0.087 4.087 5 N -0.239 5.239 6 C -0.128 4.128 7 C -0.089 4.089 8 C 0.238 3.762 9 O -0.441 6.441 10 N -0.231 5.231 11 C -0.433 4.433 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.521 5.521 15 Si 0.706 3.294 16 H -0.197 1.197 17 H -0.202 1.202 18 H -0.195 1.195 19 N -0.352 5.352 20 C 0.310 3.690 21 O -0.433 6.433 22 C -0.195 4.195 23 C 0.031 3.969 24 N -0.154 5.154 25 C -0.089 4.089 26 C -0.308 4.308 27 C -0.143 4.143 28 N -0.120 5.120 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.034 0.966 35 H 0.080 0.920 36 H 0.115 0.885 37 H 0.107 0.893 38 H 0.067 0.933 39 H 0.202 0.798 40 H 0.084 0.916 41 H 0.242 0.758 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.110 0.890 46 H 0.191 0.809 47 H 0.164 0.836 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -18.385 6.825 11.306 22.637 hybrid contribution 0.191 -0.698 -1.650 1.802 sum -18.194 6.128 9.656 21.490 Atomic orbital electron populations 1.22154 0.95036 1.02250 1.02615 1.20957 0.93312 0.97676 0.83893 0.89338 1.22508 0.89122 1.00943 0.96154 1.61574 1.03226 1.12345 1.46747 1.22588 1.03176 0.88419 0.98632 1.21926 0.96175 0.97760 0.93081 1.19615 0.87568 0.83762 0.85251 1.90526 1.69787 1.53125 1.30626 1.42219 1.10952 1.44661 1.25219 1.19416 0.83005 1.28098 1.12819 0.86294 1.25040 0.95570 0.97393 0.98157 1.69621 1.07526 1.37266 1.37673 0.86675 0.79499 0.79976 0.83242 1.19676 1.20156 1.19509 1.45771 1.66174 1.14510 1.08787 1.20236 0.77192 0.87017 0.84530 1.90694 1.51232 1.15960 1.85422 1.21869 1.05001 1.00100 0.92508 1.21408 1.02219 0.93190 0.80122 1.48786 1.23393 1.20983 1.22281 1.22636 0.92092 1.00907 0.93267 1.21524 1.05663 0.99218 1.04354 1.23888 0.94458 0.99980 0.95970 1.77313 1.22426 1.00190 1.12075 0.91656 0.92305 0.91842 0.93459 0.90222 0.96575 0.92012 0.88480 0.89315 0.93320 0.79757 0.91588 0.75809 0.87608 0.87810 0.87721 0.89019 0.80897 0.83587 0.80144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.48 37.16 0.35 -1.03 16 2 C 0.15 1.53 2.36 -67.92 -0.16 1.37 16 3 H 0.09 1.09 6.15 -51.93 -0.32 0.77 16 4 C 0.04 0.43 4.52 -3.82 -0.02 0.42 16 5 N -0.52 -7.38 4.22 -244.37 -1.03 -8.42 16 6 C 0.02 0.30 9.01 60.06 0.54 0.84 16 7 C 0.04 0.65 5.45 -4.97 -0.03 0.62 16 8 C 0.45 9.80 7.51 -10.99 -0.08 9.72 16 9 O -0.56 -14.28 13.88 5.55 0.08 -14.20 16 10 N -0.59 -13.64 5.09 -10.96 -0.06 -13.69 16 11 C -0.30 -8.44 10.16 -14.93 -0.15 -8.59 16 12 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 13 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 14 N -0.88 -25.45 13.96 55.50 0.77 -24.67 16 15 Si 0.88 19.00 27.74 -169.99 -4.71 14.29 16 16 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 17 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 19 N -0.70 -7.56 4.80 -53.80 -0.26 -7.82 16 20 C 0.52 6.16 7.79 -10.99 -0.09 6.07 16 21 O -0.55 -7.98 15.65 5.55 0.09 -7.89 16 22 C -0.15 -1.55 5.89 -27.88 -0.16 -1.71 16 23 C 0.15 1.50 5.80 -4.04 -0.02 1.47 16 24 N -0.37 -4.06 3.68 -61.37 -0.23 -4.29 16 25 C 0.06 0.54 11.45 -17.22 -0.20 0.35 16 26 C -0.28 -2.59 10.80 -40.01 -0.43 -3.02 16 27 C 0.04 0.43 12.03 -17.37 -0.21 0.23 16 28 N -0.30 -3.62 12.42 30.62 0.38 -3.24 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.45 8.12 -51.93 -0.42 0.03 16 33 H 0.08 0.72 7.93 -51.93 -0.41 0.31 16 34 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.06 0.89 6.40 -51.93 -0.33 0.56 16 36 H 0.10 1.85 5.88 -51.93 -0.31 1.54 16 37 H 0.09 1.17 7.93 -51.93 -0.41 0.76 16 38 H 0.05 0.68 8.12 -51.93 -0.42 0.25 16 39 H 0.37 7.48 5.76 -40.82 -0.24 7.25 16 40 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 41 H 0.41 4.07 8.60 -40.82 -0.35 3.72 16 42 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.10 0.94 8.03 -51.93 -0.42 0.53 16 45 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 46 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 47 H 0.15 1.04 8.06 -52.49 -0.42 0.61 16 48 H 0.18 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 399.66 15.07 6.02 6.02 Total: -1.00 -34.87 399.66 -7.11 -41.98 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: -7.41 Total: 14.19 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -0.75 Total: 7.74 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: -0.42 Total: -62.13 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: 0.16 Total: -22.10 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.71 Total: 14.29 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.87 -7.11 -41.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754302818.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.487 kcal (2) G-P(sol) polarization free energy of solvation -34.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds