Wall clock time and date at job start Tue Mar 31 2020 19:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.53005 * 109.46736 * 240.00462 * 2 1 3 5 5 N 1.46902 * 109.46590 * 184.99881 * 4 2 1 6 6 C 1.46898 * 111.00283 * 293.95038 * 5 4 2 7 7 C 1.46906 * 110.99573 * 169.99897 * 5 4 2 8 8 C 1.50706 * 109.46929 * 190.00042 * 7 5 4 9 9 O 1.21290 * 119.99857 * 359.97438 * 8 7 5 10 10 N 1.34768 * 119.99753 * 179.97438 * 8 7 5 11 11 C 1.37101 * 120.00038 * 179.97438 * 10 8 7 12 12 H 1.08001 * 119.99491 * 0.02562 * 11 10 8 13 13 C 1.38949 * 120.00069 * 180.02562 * 11 10 8 14 14 N 1.31410 * 119.99778 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00023 * 0.02562 * 13 11 10 16 16 H 1.48508 * 109.47095 * 90.00021 * 15 13 11 17 17 H 1.48496 * 109.47068 * 209.99714 * 15 13 11 18 18 H 1.48499 * 109.47248 * 330.00028 * 15 13 11 19 19 N 1.46499 * 109.46968 * 120.00396 * 2 1 3 20 20 C 1.34770 * 120.00144 * 274.99576 * 19 2 1 21 21 O 1.21286 * 120.00034 * 0.02562 * 20 19 2 22 22 C 1.50703 * 120.00224 * 180.02562 * 20 19 2 23 23 C 1.53004 * 109.47209 * 180.02562 * 22 20 19 24 24 N 1.46494 * 109.47280 * 180.02562 * 23 22 20 25 25 C 1.34949 * 126.03789 * 124.99905 * 24 23 22 26 26 C 1.35319 * 107.74286 * 179.97438 * 25 24 23 27 27 C 1.39867 * 107.92217 * 0.02562 * 26 25 24 28 28 N 1.30835 * 108.20391 * 359.73718 * 27 26 25 29 29 H 1.08997 * 109.46857 * 59.99664 * 1 2 3 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46587 * 299.99622 * 1 2 3 32 32 H 1.08993 * 109.47005 * 65.00188 * 4 2 1 33 33 H 1.09000 * 109.47130 * 304.99423 * 4 2 1 34 34 H 1.08997 * 109.47334 * 296.05250 * 6 5 4 35 35 H 1.09000 * 109.46674 * 56.05127 * 6 5 4 36 36 H 1.08995 * 109.47296 * 176.04950 * 6 5 4 37 37 H 1.08998 * 109.47121 * 309.99709 * 7 5 4 38 38 H 1.09000 * 109.47141 * 69.99907 * 7 5 4 39 39 H 0.97005 * 120.00524 * 0.02562 * 10 8 7 40 40 H 0.97004 * 119.99786 * 180.02562 * 14 13 11 41 41 H 0.96997 * 119.99986 * 95.00047 * 19 2 1 42 42 H 1.08997 * 109.47165 * 300.00173 * 22 20 19 43 43 H 1.08996 * 109.47166 * 60.00410 * 22 20 19 44 44 H 1.09007 * 109.47084 * 300.00141 * 23 22 20 45 45 H 1.09003 * 109.47173 * 60.00131 * 23 22 20 46 46 H 1.07990 * 126.12473 * 359.95853 * 25 24 23 47 47 H 1.08001 * 126.03689 * 179.97438 * 26 25 24 48 48 H 1.08003 * 125.90069 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5040 -0.8266 -1.1905 6 6 4.1311 0.4994 -1.2721 7 6 4.0107 -1.7143 -2.2457 8 6 5.4725 -1.9937 -2.0081 9 8 6.0367 -1.5013 -1.0540 10 7 6.1526 -2.7905 -2.8558 11 6 7.4825 -3.0443 -2.6400 12 1 7.9849 -2.6059 -1.7904 13 6 8.1839 -3.8655 -3.5143 14 7 9.4585 -4.1091 -3.3071 15 14 7.3150 -4.6232 -4.9841 16 1 7.4240 -3.7086 -6.1491 17 1 7.9476 -5.9250 -5.3161 18 1 5.8828 -4.8381 -4.6558 19 7 2.0184 -0.6907 1.1961 20 6 2.1472 -0.0185 2.3571 21 8 1.8584 1.1582 2.4118 22 6 2.6500 -0.7288 3.5874 23 6 2.7008 0.2541 4.7589 24 7 3.1902 -0.4363 5.9547 25 6 4.2429 -0.0628 6.7121 26 6 4.3652 -0.9590 7.7186 27 6 3.3531 -1.9130 7.5709 28 7 2.6449 -1.5977 6.5170 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.7516 -0.1582 -2.1370 33 1 1.6054 -1.7198 -1.2953 34 1 3.9101 0.9468 -2.2411 35 1 3.7381 1.1364 -0.4797 36 1 5.2101 0.3988 -1.1559 37 1 3.4545 -2.6515 -2.2301 38 1 3.8857 -1.2336 -3.2160 39 1 5.7015 -3.1840 -3.6191 40 1 9.9483 -4.6821 -3.9177 41 1 2.2490 -1.6318 1.1525 42 1 1.9778 -1.5511 3.8324 43 1 3.6493 -1.1206 3.3978 44 1 3.3729 1.0767 4.5141 45 1 1.7013 0.6455 4.9484 46 1 4.8745 0.7969 6.5447 47 1 5.1129 -0.9412 8.4978 48 1 3.1829 -2.7611 8.2176 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754302818.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:56 Heat of formation + Delta-G solvation = -8.198038 kcal Electronic energy + Delta-G solvation = -28826.387024 eV Core-core repulsion = 24724.559069 eV Total energy + Delta-G solvation = -4101.827955 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.03469 -40.98578 -40.38380 -38.41509 -36.18112 -35.59034 -35.21086 -33.73608 -32.43716 -31.21287 -30.23566 -29.62219 -28.00871 -26.57836 -25.72545 -23.84735 -22.16094 -21.93555 -21.35903 -21.22440 -21.13337 -20.15000 -18.66333 -17.89558 -17.42577 -17.23837 -16.93129 -16.75080 -16.59207 -16.10215 -15.74618 -15.56214 -15.22084 -15.13233 -15.04493 -14.81868 -14.35877 -14.24541 -14.18398 -13.97322 -13.64105 -13.57499 -13.36942 -13.22121 -13.11309 -12.90099 -12.76387 -12.66355 -12.46274 -12.41624 -12.36771 -11.97790 -11.71057 -11.57856 -11.45199 -10.97327 -10.39460 -10.35101 -10.21562 -9.99827 -9.51512 -9.21625 -8.40063 -6.00561 0.98089 1.30443 1.36185 1.45086 1.52061 1.62508 1.97794 1.99532 2.23887 2.30769 2.62412 3.16658 3.25980 3.53312 3.70464 3.79189 3.89194 4.08413 4.09895 4.18857 4.20163 4.31758 4.34440 4.41013 4.45702 4.52417 4.55217 4.57950 4.70054 4.72171 4.79183 4.82075 4.85370 4.91813 5.04815 5.17371 5.18597 5.30586 5.54472 5.57445 5.77624 5.90077 6.00713 6.10878 6.16779 6.57561 6.61843 6.77878 6.91099 7.24784 7.42768 8.01013 8.77775 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010172 B = 0.002496 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.932424 B =11214.712211 C =13280.698153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.146 3.854 3 H 0.066 0.934 4 C 0.047 3.953 5 N -0.533 5.533 6 C 0.029 3.971 7 C 0.054 3.946 8 C 0.451 3.549 9 O -0.605 6.605 10 N -0.594 5.594 11 C -0.325 4.325 12 H 0.054 0.946 13 C -0.017 4.017 14 N -0.937 5.937 15 Si 0.965 3.035 16 H -0.259 1.259 17 H -0.277 1.277 18 H -0.228 1.228 19 N -0.699 5.699 20 C 0.523 3.477 21 O -0.583 6.583 22 C -0.142 4.142 23 C 0.154 3.846 24 N -0.383 5.383 25 C 0.048 3.952 26 C -0.286 4.286 27 C 0.037 3.963 28 N -0.335 5.335 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.033 0.967 35 H 0.063 0.937 36 H 0.051 0.949 37 H 0.126 0.874 38 H 0.078 0.922 39 H 0.389 0.611 40 H 0.278 0.722 41 H 0.412 0.588 42 H 0.111 0.889 43 H 0.096 0.904 44 H 0.110 0.890 45 H 0.088 0.912 46 H 0.199 0.801 47 H 0.167 0.833 48 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.045 5.219 9.245 23.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.041 3.959 3 H 0.085 0.915 4 C -0.080 4.080 5 N -0.257 5.257 6 C -0.119 4.119 7 C -0.077 4.077 8 C 0.239 3.761 9 O -0.489 6.489 10 N -0.236 5.236 11 C -0.454 4.454 12 H 0.072 0.928 13 C -0.216 4.216 14 N -0.578 5.578 15 Si 0.785 3.215 16 H -0.184 1.184 17 H -0.203 1.203 18 H -0.151 1.151 19 N -0.348 5.348 20 C 0.309 3.691 21 O -0.465 6.465 22 C -0.183 4.183 23 C 0.033 3.967 24 N -0.165 5.165 25 C -0.098 4.098 26 C -0.315 4.315 27 C -0.149 4.149 28 N -0.157 5.157 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.123 0.877 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.144 0.856 38 H 0.096 0.904 39 H 0.225 0.775 40 H 0.088 0.912 41 H 0.248 0.752 42 H 0.129 0.871 43 H 0.114 0.886 44 H 0.128 0.872 45 H 0.106 0.894 46 H 0.216 0.784 47 H 0.185 0.815 48 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -21.608 5.839 9.428 24.287 hybrid contribution 1.236 -0.295 -0.906 1.561 sum -20.372 5.544 8.521 22.767 Atomic orbital electron populations 1.22067 0.93214 1.03220 1.02617 1.21016 0.94614 0.96507 0.83801 0.91547 1.22584 0.86072 1.02758 0.96601 1.61470 1.05718 1.11543 1.46955 1.22357 1.00376 0.89462 0.99694 1.21867 0.91172 1.00026 0.94598 1.20956 0.90139 0.81407 0.83582 1.90526 1.71675 1.54187 1.32527 1.42049 1.09299 1.45735 1.26525 1.18972 0.85463 1.29163 1.11800 0.92817 1.26122 0.96224 0.97313 1.01904 1.69812 1.09947 1.38433 1.39632 0.85368 0.80090 0.78401 0.77668 1.18351 1.20268 1.15097 1.45822 1.65575 1.14707 1.08743 1.20455 0.76777 0.86670 0.85169 1.90678 1.52675 1.17204 1.85914 1.21748 1.04438 1.00061 0.92005 1.21377 1.02209 0.93179 0.79937 1.48883 1.23945 1.21057 1.22656 1.23203 0.91854 1.01705 0.93005 1.21886 1.05925 0.98855 1.04828 1.24434 0.94157 1.00684 0.95612 1.77255 1.23857 1.01263 1.13336 0.89966 0.90789 0.93556 0.91365 0.87673 0.94825 0.91796 0.93060 0.85634 0.90370 0.77547 0.91247 0.75246 0.87102 0.88577 0.87179 0.89380 0.78416 0.81502 0.77723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.48 71.98 0.68 -1.51 16 2 C 0.15 2.71 2.36 45.00 0.11 2.82 16 3 H 0.07 1.56 6.15 -2.39 -0.01 1.55 16 4 C 0.05 0.79 4.52 86.30 0.39 1.18 16 5 N -0.53 -13.93 4.22 -927.04 -3.92 -17.85 16 6 C 0.03 0.87 9.01 127.69 1.15 2.02 16 7 C 0.05 1.48 5.45 85.56 0.47 1.94 16 8 C 0.45 19.29 7.51 87.66 0.66 19.95 16 9 O -0.61 -32.14 13.88 -3.06 -0.04 -32.18 16 10 N -0.59 -26.95 5.09 -306.99 -1.56 -28.51 16 11 C -0.32 -18.67 10.16 84.04 0.85 -17.82 16 12 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 13 C -0.02 -0.95 5.50 84.93 0.47 -0.49 16 14 N -0.94 -56.23 13.96 21.66 0.30 -55.93 16 15 Si 0.96 37.92 27.74 68.60 1.90 39.83 16 16 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 17 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 18 H -0.23 -7.36 6.52 99.48 0.65 -6.71 16 19 N -0.70 -14.24 4.80 -442.52 -2.12 -16.37 16 20 C 0.52 12.27 7.79 87.66 0.68 12.95 16 21 O -0.58 -17.02 15.65 -3.05 -0.05 -17.07 16 22 C -0.14 -2.89 5.89 29.85 0.18 -2.72 16 23 C 0.15 3.10 5.80 86.38 0.50 3.60 16 24 N -0.38 -8.39 3.68 -348.06 -1.28 -9.67 16 25 C 0.05 0.89 11.45 83.54 0.96 1.84 16 26 C -0.29 -5.07 10.80 21.99 0.24 -4.83 16 27 C 0.04 0.72 12.03 85.24 1.02 1.74 16 28 N -0.34 -8.13 12.42 -57.02 -0.71 -8.84 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.07 0.94 8.12 -2.39 -0.02 0.92 16 33 H 0.11 1.30 7.93 -2.39 -0.02 1.29 16 34 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 1.84 6.40 -2.39 -0.02 1.82 16 36 H 0.05 2.01 5.88 -2.39 -0.01 2.00 16 37 H 0.13 2.60 7.93 -2.39 -0.02 2.58 16 38 H 0.08 1.76 8.12 -2.39 -0.02 1.74 16 39 H 0.39 14.44 5.76 -92.70 -0.53 13.91 16 40 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 41 H 0.41 7.60 8.60 -92.71 -0.80 6.80 16 42 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.11 2.04 8.03 -2.38 -0.02 2.02 16 45 H 0.09 1.81 8.10 -2.39 -0.02 1.79 16 46 H 0.20 2.37 8.06 -2.92 -0.02 2.34 16 47 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 48 H 0.21 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -83.05 399.66 0.47 -82.58 By element: Atomic # 1 Polarization: 43.72 SS G_CDS: -0.41 Total: 43.31 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: 8.35 Total: 20.70 kcal Atomic # 7 Polarization: -127.88 SS G_CDS: -9.29 Total: -137.17 kcal Atomic # 8 Polarization: -49.16 SS G_CDS: -0.09 Total: -49.25 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 1.90 Total: 39.83 kcal Total: -83.05 0.47 -82.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754302818.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.383 kcal (2) G-P(sol) polarization free energy of solvation -83.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds