Wall clock time and date at job start Tue Mar 31 2020 19:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.47083 * 2 1 4 4 C 1.53003 * 109.47150 * 239.99669 * 2 1 3 5 5 N 1.46900 * 109.46789 * 185.18644 * 4 2 1 6 6 C 1.46907 * 110.99438 * 163.94290 * 5 4 2 7 7 C 1.46902 * 110.99893 * 287.88738 * 5 4 2 8 8 C 1.50702 * 109.46653 * 170.00402 * 7 5 4 9 9 O 1.21291 * 120.00317 * 359.97438 * 8 7 5 10 10 N 1.34782 * 119.99702 * 180.02562 * 8 7 5 11 11 C 1.37091 * 119.99887 * 179.97438 * 10 8 7 12 12 H 1.08002 * 119.99969 * 0.02562 * 11 10 8 13 13 C 1.38955 * 120.00098 * 179.97438 * 11 10 8 14 14 N 1.31414 * 120.00027 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 119.99906 * 0.02562 * 13 11 10 16 16 H 1.48505 * 109.47172 * 89.99480 * 15 13 11 17 17 H 1.48491 * 109.47427 * 209.99809 * 15 13 11 18 18 H 1.48500 * 109.47020 * 329.99784 * 15 13 11 19 19 N 1.46502 * 109.46725 * 119.99974 * 2 1 3 20 20 C 1.34770 * 119.99928 * 274.60066 * 19 2 1 21 21 O 1.21283 * 120.00329 * 0.02562 * 20 19 2 22 22 C 1.50697 * 120.00115 * 180.02562 * 20 19 2 23 23 C 1.50702 * 109.47335 * 180.02562 * 22 20 19 24 24 C 1.39872 * 125.90155 * 125.00016 * 23 22 20 25 25 C 1.35314 * 107.92180 * 180.22054 * 24 23 22 26 26 N 1.34952 * 107.74238 * 359.61003 * 25 24 23 27 27 C 1.46505 * 126.03350 * 180.14896 * 26 25 24 28 28 N 1.30837 * 125.89612 * 304.97570 * 23 22 20 29 29 H 1.08998 * 109.47083 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47138 * 300.00239 * 1 2 3 31 31 H 1.08998 * 109.46731 * 60.00526 * 1 2 3 32 32 H 1.08996 * 109.47248 * 305.19060 * 4 2 1 33 33 H 1.09000 * 109.46834 * 65.18461 * 4 2 1 34 34 H 1.08991 * 109.47488 * 54.89163 * 6 5 4 35 35 H 1.09004 * 109.46874 * 174.89513 * 6 5 4 36 36 H 1.09003 * 109.46802 * 294.88838 * 6 5 4 37 37 H 1.08999 * 109.47207 * 290.00422 * 7 5 4 38 38 H 1.08995 * 109.47021 * 50.00623 * 7 5 4 39 39 H 0.96995 * 119.99832 * 359.97438 * 10 8 7 40 40 H 0.97002 * 119.99803 * 179.97438 * 14 13 11 41 41 H 0.96997 * 120.00047 * 94.60434 * 19 2 1 42 42 H 1.09002 * 109.47341 * 60.00397 * 22 20 19 43 43 H 1.09000 * 109.47458 * 300.00277 * 22 20 19 44 44 H 1.08004 * 126.03635 * 359.95977 * 24 23 22 45 45 H 1.07998 * 126.12578 * 179.76102 * 25 24 23 46 46 H 1.09004 * 109.46744 * 270.26135 * 27 26 25 47 47 H 1.08996 * 109.47107 * 30.25709 * 27 26 25 48 48 H 1.08993 * 109.47107 * 150.25765 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5038 -0.8307 -1.1882 6 6 3.9976 -1.8271 -2.1480 7 6 4.1389 0.4750 -1.4112 8 6 5.6105 0.3772 -1.1012 9 8 6.0834 -0.6764 -0.7304 10 7 6.4008 1.4608 -1.2349 11 6 7.7393 1.3719 -0.9524 12 1 8.1606 0.4336 -0.6231 13 6 8.5543 2.4889 -1.0908 14 7 9.8375 2.4036 -0.8205 15 14 7.8258 4.1116 -1.6611 16 1 7.3757 4.8939 -0.4818 17 1 8.8551 4.8828 -2.4031 18 1 6.6671 3.8482 -2.5518 19 7 2.0183 -0.6906 1.1962 20 6 2.1546 -0.0164 2.3551 21 8 1.8727 1.1621 2.4079 22 6 2.6574 -0.7266 3.5855 23 6 2.7167 0.2439 4.7369 24 6 2.0978 0.0800 5.9805 25 6 2.3844 1.1663 6.7346 26 7 3.1644 1.9845 5.9975 27 6 3.7094 3.2744 6.4282 28 7 3.3563 1.3853 4.7460 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6029 -1.7186 -1.2969 33 1 1.7546 -0.1567 -2.1368 34 1 3.6345 -1.5816 -3.1459 35 1 5.0877 -1.8236 -2.1469 36 1 3.6373 -2.8156 -1.8632 37 1 4.0057 0.7709 -2.4518 38 1 3.6791 1.2186 -0.7604 39 1 6.0225 2.3034 -1.5311 40 1 10.4064 3.1832 -0.9174 41 1 2.2435 -1.6332 1.1541 42 1 3.6539 -1.1245 3.3937 43 1 1.9814 -1.5445 3.8347 44 1 1.4940 -0.7627 6.2835 45 1 2.0509 1.3452 7.7461 46 1 3.0047 4.0679 6.1790 47 1 3.8724 3.2584 7.5058 48 1 4.6563 3.4566 5.9202 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754310828.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:32 Heat of formation + Delta-G solvation = 24.714251 kcal Electronic energy + Delta-G solvation = -29670.925226 eV Core-core repulsion = 25570.524455 eV Total energy + Delta-G solvation = -4100.400771 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.15670 -39.61771 -38.64276 -36.94051 -34.68647 -33.80360 -33.74242 -31.61286 -31.46900 -30.19616 -29.31080 -28.19789 -26.96110 -25.78812 -24.55892 -22.62591 -21.41217 -21.10901 -20.36935 -19.47335 -19.25398 -18.20275 -17.00192 -16.95985 -16.12358 -16.06288 -15.47928 -15.27019 -14.94979 -14.87049 -14.45533 -14.17421 -14.07886 -13.78768 -13.62730 -13.31630 -13.15596 -12.95143 -12.87170 -12.67019 -12.46271 -12.37030 -12.34911 -12.13804 -11.91432 -11.82875 -11.72654 -11.51304 -11.23171 -11.06480 -10.64438 -10.53433 -10.45517 -9.92352 -9.62350 -9.47468 -9.16341 -8.83003 -8.53171 -8.50370 -8.11844 -7.95426 -6.25838 -3.76393 1.96058 2.54810 2.76362 2.92791 3.07511 3.13151 3.19794 3.46358 3.80360 3.97786 4.16040 4.44224 4.65463 4.71497 4.85649 4.93194 5.03231 5.08829 5.15012 5.20590 5.26158 5.30141 5.36015 5.40734 5.52102 5.54782 5.60342 5.63612 5.66014 5.68494 5.79934 5.88667 5.90677 5.97899 6.03376 6.05491 6.14003 6.46638 6.65616 6.69629 7.03427 7.17315 7.30200 7.64182 7.76214 7.83423 8.20369 8.51681 8.66173 9.01011 9.48795 9.89944 10.87402 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007732 B = 0.003865 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3620.661539 B = 7243.401040 C = 9757.254932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.146 3.854 3 H 0.085 0.915 4 C 0.044 3.956 5 N -0.514 5.514 6 C 0.023 3.977 7 C 0.040 3.960 8 C 0.456 3.544 9 O -0.560 6.560 10 N -0.592 5.592 11 C -0.302 4.302 12 H 0.120 0.880 13 C 0.042 3.958 14 N -0.883 5.883 15 Si 0.878 3.122 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.270 1.270 19 N -0.708 5.708 20 C 0.520 3.480 21 O -0.532 6.532 22 C -0.060 4.060 23 C 0.083 3.917 24 C -0.268 4.268 25 C 0.045 3.955 26 N -0.378 5.378 27 C 0.102 3.898 28 N -0.254 5.254 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.014 0.986 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.047 0.953 38 H 0.089 0.911 39 H 0.370 0.630 40 H 0.272 0.728 41 H 0.403 0.597 42 H 0.113 0.887 43 H 0.109 0.891 44 H 0.145 0.855 45 H 0.170 0.830 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.865 -4.127 8.940 23.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.041 3.959 3 H 0.103 0.897 4 C -0.085 4.085 5 N -0.238 5.238 6 C -0.125 4.125 7 C -0.091 4.091 8 C 0.242 3.758 9 O -0.441 6.441 10 N -0.231 5.231 11 C -0.430 4.430 12 H 0.137 0.863 13 C -0.161 4.161 14 N -0.523 5.523 15 Si 0.704 3.296 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.196 1.196 19 N -0.360 5.360 20 C 0.305 3.695 21 O -0.408 6.408 22 C -0.102 4.102 23 C -0.084 4.084 24 C -0.298 4.298 25 C -0.100 4.100 26 N -0.160 5.160 27 C -0.040 4.040 28 N -0.076 5.076 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.032 0.968 35 H 0.113 0.887 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.107 0.893 39 H 0.202 0.798 40 H 0.083 0.917 41 H 0.237 0.763 42 H 0.131 0.869 43 H 0.127 0.873 44 H 0.163 0.837 45 H 0.188 0.812 46 H 0.091 0.909 47 H 0.103 0.897 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.588 -3.075 9.113 21.822 hybrid contribution -1.025 0.819 -0.744 1.508 sum -20.612 -2.257 8.369 22.361 Atomic orbital electron populations 1.22140 0.95316 1.01974 1.02463 1.20904 0.93068 0.97740 0.84193 0.89662 1.22489 0.88979 1.00896 0.96132 1.61541 1.03232 1.07080 1.51926 1.22532 1.03897 0.94586 0.91460 1.21948 0.95306 0.92004 0.99869 1.19592 0.86964 0.84978 0.84295 1.90514 1.75239 1.28514 1.49883 1.42213 1.09260 1.10233 1.61390 1.19412 0.81078 1.00160 1.42385 0.86289 1.25012 0.95302 0.97999 0.97761 1.69624 1.03853 1.30673 1.48168 0.86700 0.79159 0.84330 0.79400 1.19570 1.20222 1.19558 1.45688 1.67435 1.13977 1.08864 1.20269 0.77517 0.87364 0.84335 1.90718 1.49525 1.15578 1.84950 1.20016 1.04583 0.96177 0.89420 1.21541 0.97850 0.94030 0.95010 1.21299 1.11502 1.02132 0.94869 1.22447 0.96959 0.92074 0.98545 1.48584 1.39478 1.17365 1.10561 1.21835 1.00670 0.81058 1.00389 1.77576 1.22901 1.08917 0.98235 0.92453 0.91931 0.91904 0.90163 0.93548 0.96788 0.88655 0.91955 0.93465 0.89331 0.79791 0.91704 0.76273 0.86858 0.87295 0.83687 0.81238 0.90886 0.89685 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.49 37.16 0.35 -1.21 16 2 C 0.15 1.76 2.52 -67.92 -0.17 1.59 16 3 H 0.09 1.27 6.22 -51.93 -0.32 0.95 16 4 C 0.04 0.49 4.53 -3.82 -0.02 0.48 16 5 N -0.51 -7.82 4.17 -244.36 -1.02 -8.84 16 6 C 0.02 0.34 9.19 60.07 0.55 0.89 16 7 C 0.04 0.71 5.30 -4.97 -0.03 0.68 16 8 C 0.46 10.65 7.42 -10.98 -0.08 10.57 16 9 O -0.56 -14.91 13.96 5.55 0.08 -14.83 16 10 N -0.59 -14.71 5.09 -10.96 -0.06 -14.76 16 11 C -0.30 -8.77 10.16 -14.93 -0.15 -8.92 16 12 H 0.12 3.92 7.39 -52.49 -0.39 3.53 16 13 C 0.04 1.18 5.50 -17.46 -0.10 1.09 16 14 N -0.88 -26.39 13.96 55.50 0.77 -25.62 16 15 Si 0.88 20.24 27.74 -169.99 -4.71 15.53 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.27 -5.71 6.52 56.52 0.37 -5.34 16 19 N -0.71 -8.76 4.79 -53.80 -0.26 -9.02 16 20 C 0.52 7.75 7.79 -10.99 -0.09 7.66 16 21 O -0.53 -10.12 15.22 5.55 0.08 -10.04 16 22 C -0.06 -0.75 6.28 -29.04 -0.18 -0.93 16 23 C 0.08 1.24 6.02 -82.40 -0.50 0.74 16 24 C -0.27 -3.19 10.72 -40.01 -0.43 -3.62 16 25 C 0.05 0.50 11.49 -17.22 -0.20 0.30 16 26 N -0.38 -5.09 4.01 -68.16 -0.27 -5.36 16 27 C 0.10 0.95 11.47 59.85 0.69 1.63 16 28 N -0.25 -4.44 11.92 33.67 0.40 -4.04 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.75 7.99 -51.93 -0.42 0.33 16 33 H 0.05 0.48 8.05 -51.93 -0.42 0.07 16 34 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 35 H 0.09 1.78 5.79 -51.93 -0.30 1.48 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 38 H 0.09 1.52 6.50 -51.93 -0.34 1.18 16 39 H 0.37 8.26 5.76 -40.82 -0.24 8.02 16 40 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.40 4.20 8.61 -40.82 -0.35 3.85 16 42 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.11 0.90 8.12 -51.93 -0.42 0.48 16 44 H 0.15 1.28 8.06 -52.48 -0.42 0.86 16 45 H 0.17 1.11 8.06 -52.49 -0.42 0.68 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 399.72 15.07 6.02 6.02 Total: -1.00 -39.10 399.72 -6.73 -45.83 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -7.43 Total: 14.18 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: -0.34 Total: 10.95 kcal Atomic # 7 Polarization: -67.22 SS G_CDS: -0.43 Total: -67.65 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: 0.16 Total: -24.87 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.71 Total: 15.53 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -39.10 -6.73 -45.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754310828.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.548 kcal (2) G-P(sol) polarization free energy of solvation -39.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds