Wall clock time and date at job start Tue Mar 31 2020 19:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.47083 * 2 1 4 4 C 1.53003 * 109.47150 * 239.99669 * 2 1 3 5 5 N 1.46900 * 109.46789 * 185.18644 * 4 2 1 6 6 C 1.46907 * 110.99438 * 163.94290 * 5 4 2 7 7 C 1.46902 * 110.99893 * 287.88738 * 5 4 2 8 8 C 1.50702 * 109.46653 * 170.00402 * 7 5 4 9 9 O 1.21291 * 120.00317 * 359.97438 * 8 7 5 10 10 N 1.34782 * 119.99702 * 180.02562 * 8 7 5 11 11 C 1.37091 * 119.99887 * 179.97438 * 10 8 7 12 12 H 1.08002 * 119.99969 * 0.02562 * 11 10 8 13 13 C 1.38955 * 120.00098 * 179.97438 * 11 10 8 14 14 N 1.31414 * 120.00027 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 119.99906 * 0.02562 * 13 11 10 16 16 H 1.48505 * 109.47172 * 89.99480 * 15 13 11 17 17 H 1.48491 * 109.47427 * 209.99809 * 15 13 11 18 18 H 1.48500 * 109.47020 * 329.99784 * 15 13 11 19 19 N 1.46502 * 109.46725 * 119.99974 * 2 1 3 20 20 C 1.34770 * 119.99928 * 274.60066 * 19 2 1 21 21 O 1.21283 * 120.00329 * 0.02562 * 20 19 2 22 22 C 1.50697 * 120.00115 * 180.02562 * 20 19 2 23 23 C 1.50702 * 109.47335 * 180.02562 * 22 20 19 24 24 C 1.39872 * 125.90155 * 125.00016 * 23 22 20 25 25 C 1.35314 * 107.92180 * 180.22054 * 24 23 22 26 26 N 1.34952 * 107.74238 * 359.61003 * 25 24 23 27 27 C 1.46505 * 126.03350 * 180.14896 * 26 25 24 28 28 N 1.30837 * 125.89612 * 304.97570 * 23 22 20 29 29 H 1.08998 * 109.47083 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47138 * 300.00239 * 1 2 3 31 31 H 1.08998 * 109.46731 * 60.00526 * 1 2 3 32 32 H 1.08996 * 109.47248 * 305.19060 * 4 2 1 33 33 H 1.09000 * 109.46834 * 65.18461 * 4 2 1 34 34 H 1.08991 * 109.47488 * 54.89163 * 6 5 4 35 35 H 1.09004 * 109.46874 * 174.89513 * 6 5 4 36 36 H 1.09003 * 109.46802 * 294.88838 * 6 5 4 37 37 H 1.08999 * 109.47207 * 290.00422 * 7 5 4 38 38 H 1.08995 * 109.47021 * 50.00623 * 7 5 4 39 39 H 0.96995 * 119.99832 * 359.97438 * 10 8 7 40 40 H 0.97002 * 119.99803 * 179.97438 * 14 13 11 41 41 H 0.96997 * 120.00047 * 94.60434 * 19 2 1 42 42 H 1.09002 * 109.47341 * 60.00397 * 22 20 19 43 43 H 1.09000 * 109.47458 * 300.00277 * 22 20 19 44 44 H 1.08004 * 126.03635 * 359.95977 * 24 23 22 45 45 H 1.07998 * 126.12578 * 179.76102 * 25 24 23 46 46 H 1.09004 * 109.46744 * 270.26135 * 27 26 25 47 47 H 1.08996 * 109.47107 * 30.25709 * 27 26 25 48 48 H 1.08993 * 109.47107 * 150.25765 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5038 -0.8307 -1.1882 6 6 3.9976 -1.8271 -2.1480 7 6 4.1389 0.4750 -1.4112 8 6 5.6105 0.3772 -1.1012 9 8 6.0834 -0.6764 -0.7304 10 7 6.4008 1.4608 -1.2349 11 6 7.7393 1.3719 -0.9524 12 1 8.1606 0.4336 -0.6231 13 6 8.5543 2.4889 -1.0908 14 7 9.8375 2.4036 -0.8205 15 14 7.8258 4.1116 -1.6611 16 1 7.3757 4.8939 -0.4818 17 1 8.8551 4.8828 -2.4031 18 1 6.6671 3.8482 -2.5518 19 7 2.0183 -0.6906 1.1962 20 6 2.1546 -0.0164 2.3551 21 8 1.8727 1.1621 2.4079 22 6 2.6574 -0.7266 3.5855 23 6 2.7167 0.2439 4.7369 24 6 2.0978 0.0800 5.9805 25 6 2.3844 1.1663 6.7346 26 7 3.1644 1.9845 5.9975 27 6 3.7094 3.2744 6.4282 28 7 3.3563 1.3853 4.7460 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6029 -1.7186 -1.2969 33 1 1.7546 -0.1567 -2.1368 34 1 3.6345 -1.5816 -3.1459 35 1 5.0877 -1.8236 -2.1469 36 1 3.6373 -2.8156 -1.8632 37 1 4.0057 0.7709 -2.4518 38 1 3.6791 1.2186 -0.7604 39 1 6.0225 2.3034 -1.5311 40 1 10.4064 3.1832 -0.9174 41 1 2.2435 -1.6332 1.1541 42 1 3.6539 -1.1245 3.3937 43 1 1.9814 -1.5445 3.8347 44 1 1.4940 -0.7627 6.2835 45 1 2.0509 1.3452 7.7461 46 1 3.0047 4.0679 6.1790 47 1 3.8724 3.2584 7.5058 48 1 4.6563 3.4566 5.9202 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754310828.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:31 Heat of formation + Delta-G solvation = -7.943914 kcal Electronic energy + Delta-G solvation = -29672.341391 eV Core-core repulsion = 25570.524455 eV Total energy + Delta-G solvation = -4101.816935 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.09142 -40.82287 -40.28288 -38.28337 -36.15052 -35.51928 -34.73946 -33.76731 -32.46060 -31.09141 -30.27370 -29.73145 -27.94468 -26.65203 -26.48485 -23.80266 -22.52059 -21.99347 -21.54460 -21.13205 -20.47271 -20.15054 -18.16280 -17.85533 -17.71529 -17.16319 -16.81231 -16.69123 -16.33963 -15.97908 -15.79466 -15.47627 -15.21418 -15.11565 -14.93164 -14.62584 -14.36970 -14.32997 -14.15076 -13.80726 -13.58452 -13.50755 -13.32141 -13.18544 -13.12081 -12.89499 -12.80232 -12.78934 -12.66710 -12.44865 -12.38778 -12.01287 -11.67129 -11.48609 -11.44130 -10.78157 -10.36179 -10.24625 -10.17952 -9.88000 -9.42905 -9.19376 -8.44075 -6.03378 1.05202 1.24349 1.30721 1.37826 1.73516 1.80395 1.83976 1.93866 2.18575 2.46634 2.67619 3.12104 3.21776 3.59420 3.83141 3.93392 4.03147 4.06601 4.17946 4.24287 4.30525 4.34492 4.38978 4.42146 4.49612 4.58283 4.59924 4.64753 4.68592 4.74722 4.81983 4.85228 4.87173 4.92236 5.10249 5.19183 5.23901 5.33414 5.50415 5.68802 5.73470 5.88727 6.01027 6.22110 6.25771 6.57471 6.75453 6.86393 6.87699 7.37820 7.46213 7.94600 8.73662 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007732 B = 0.003865 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3620.661539 B = 7243.401040 C = 9757.254932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.143 3.857 3 H 0.053 0.947 4 C 0.051 3.949 5 N -0.532 5.532 6 C 0.028 3.972 7 C 0.054 3.946 8 C 0.454 3.546 9 O -0.598 6.598 10 N -0.597 5.597 11 C -0.324 4.324 12 H 0.059 0.941 13 C -0.012 4.012 14 N -0.933 5.933 15 Si 0.957 3.043 16 H -0.265 1.265 17 H -0.269 1.269 18 H -0.234 1.234 19 N -0.698 5.698 20 C 0.513 3.487 21 O -0.580 6.580 22 C -0.059 4.059 23 C 0.064 3.936 24 C -0.281 4.281 25 C 0.054 3.946 26 N -0.390 5.390 27 C 0.095 3.905 28 N -0.330 5.330 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.067 0.933 34 H 0.036 0.964 35 H 0.048 0.952 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.385 0.615 40 H 0.279 0.721 41 H 0.413 0.587 42 H 0.106 0.894 43 H 0.152 0.848 44 H 0.175 0.825 45 H 0.217 0.783 46 H 0.079 0.921 47 H 0.125 0.875 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.623 -3.888 8.606 26.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.038 3.962 3 H 0.071 0.929 4 C -0.076 4.076 5 N -0.256 5.256 6 C -0.119 4.119 7 C -0.077 4.077 8 C 0.242 3.758 9 O -0.481 6.481 10 N -0.239 5.239 11 C -0.453 4.453 12 H 0.077 0.923 13 C -0.211 4.211 14 N -0.574 5.574 15 Si 0.778 3.222 16 H -0.190 1.190 17 H -0.193 1.193 18 H -0.157 1.157 19 N -0.350 5.350 20 C 0.300 3.700 21 O -0.459 6.459 22 C -0.100 4.100 23 C -0.102 4.102 24 C -0.310 4.310 25 C -0.092 4.092 26 N -0.172 5.172 27 C -0.046 4.046 28 N -0.153 5.153 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.129 0.871 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.220 0.780 40 H 0.088 0.912 41 H 0.250 0.750 42 H 0.125 0.875 43 H 0.169 0.831 44 H 0.193 0.807 45 H 0.234 0.766 46 H 0.098 0.902 47 H 0.143 0.857 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -23.371 -2.886 8.748 25.121 hybrid contribution 0.157 0.603 -0.554 0.833 sum -23.214 -2.283 8.194 24.724 Atomic orbital electron populations 1.22030 0.93149 1.03350 1.02214 1.20985 0.94682 0.96159 0.84385 0.92877 1.22561 0.85978 1.02907 0.96170 1.61467 1.05669 1.05803 1.52688 1.22414 1.00994 0.95775 0.92736 1.21783 0.90524 0.93844 1.01547 1.20815 0.89357 0.83750 0.81897 1.90499 1.76767 1.30028 1.50833 1.42096 1.07835 1.11568 1.62376 1.19000 0.83497 0.98609 1.44209 0.92333 1.26006 0.95435 1.02495 0.97129 1.69791 1.05804 1.32499 1.49294 0.85465 0.79567 0.77595 0.79572 1.18973 1.19338 1.15740 1.45687 1.66431 1.14387 1.08445 1.20714 0.76905 0.86929 0.85495 1.90688 1.51856 1.17632 1.85772 1.20147 1.05054 0.96705 0.88096 1.22044 0.97757 0.93765 0.96640 1.21739 1.11853 1.03608 0.93839 1.23249 0.95066 0.90921 0.99914 1.48904 1.39994 1.18464 1.09863 1.22103 0.99862 0.80061 1.02549 1.77456 1.25721 1.10978 1.01170 0.90180 0.94131 0.90221 0.87090 0.91476 0.94525 0.93343 0.89585 0.90512 0.88757 0.77994 0.91170 0.75015 0.87547 0.83050 0.80720 0.76622 0.90224 0.85675 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.49 71.99 0.68 -1.82 16 2 C 0.14 3.17 2.52 45.00 0.11 3.29 16 3 H 0.05 1.55 6.22 -2.39 -0.01 1.53 16 4 C 0.05 0.97 4.53 86.30 0.39 1.36 16 5 N -0.53 -15.11 4.17 -927.03 -3.87 -18.98 16 6 C 0.03 0.79 9.19 127.69 1.17 1.96 16 7 C 0.05 1.83 5.30 85.56 0.45 2.29 16 8 C 0.45 21.66 7.42 87.66 0.65 22.31 16 9 O -0.60 -33.42 13.96 -3.06 -0.04 -33.46 16 10 N -0.60 -30.26 5.09 -306.98 -1.56 -31.82 16 11 C -0.32 -19.84 10.16 84.04 0.85 -18.98 16 12 H 0.06 4.20 7.39 -2.91 -0.02 4.18 16 13 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 14 N -0.93 -58.10 13.96 21.66 0.30 -57.80 16 15 Si 0.96 41.63 27.74 68.60 1.90 43.53 16 16 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 17 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 18 H -0.23 -8.74 6.52 99.48 0.65 -8.09 16 19 N -0.70 -16.50 4.79 -442.52 -2.12 -18.62 16 20 C 0.51 15.44 7.79 87.66 0.68 16.13 16 21 O -0.58 -22.87 15.22 -3.04 -0.05 -22.91 16 22 C -0.06 -1.46 6.28 29.10 0.18 -1.28 16 23 C 0.06 1.94 6.02 43.10 0.26 2.20 16 24 C -0.28 -6.29 10.72 21.99 0.24 -6.05 16 25 C 0.05 1.09 11.49 83.54 0.96 2.05 16 26 N -0.39 -10.48 4.01 -369.56 -1.48 -11.96 16 27 C 0.09 1.73 11.47 127.77 1.47 3.20 16 28 N -0.33 -12.03 11.92 -47.38 -0.56 -12.59 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.11 1.49 7.99 -2.39 -0.02 1.47 16 33 H 0.07 1.07 8.05 -2.39 -0.02 1.05 16 34 H 0.04 0.84 8.13 -2.39 -0.02 0.82 16 35 H 0.05 1.82 5.79 -2.38 -0.01 1.81 16 36 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.08 2.17 8.12 -2.39 -0.02 2.15 16 38 H 0.09 3.14 6.50 -2.39 -0.02 3.12 16 39 H 0.39 16.81 5.76 -92.71 -0.53 16.28 16 40 H 0.28 15.87 8.31 -92.71 -0.77 15.10 16 41 H 0.41 7.87 8.61 -92.71 -0.80 7.07 16 42 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 43 H 0.15 2.24 8.12 -2.39 -0.02 2.22 16 44 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16 45 H 0.22 1.99 8.06 -2.91 -0.02 1.96 16 46 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 47 H 0.13 1.19 8.14 -2.39 -0.02 1.18 16 48 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -95.26 399.72 0.68 -94.58 By element: Atomic # 1 Polarization: 44.03 SS G_CDS: -0.40 Total: 43.63 kcal Atomic # 6 Polarization: 17.84 SS G_CDS: 8.57 Total: 26.41 kcal Atomic # 7 Polarization: -142.48 SS G_CDS: -9.30 Total: -151.77 kcal Atomic # 8 Polarization: -56.29 SS G_CDS: -0.09 Total: -56.38 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 1.90 Total: 43.53 kcal Total: -95.26 0.68 -94.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754310828.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.638 kcal (2) G-P(sol) polarization free energy of solvation -95.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds