Wall clock time and date at job start Tue Mar 31 2020 19:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47025 * 2 1 4 4 C 1.52997 * 109.47128 * 119.99581 * 2 1 3 5 5 N 1.46906 * 109.46705 * 175.16327 * 4 2 1 6 6 C 1.46898 * 110.99759 * 198.92624 * 5 4 2 7 7 C 1.46905 * 110.99912 * 74.98042 * 5 4 2 8 8 C 1.50692 * 109.46948 * 189.99832 * 7 5 4 9 9 O 1.21294 * 120.00441 * 359.97438 * 8 7 5 10 10 N 1.34781 * 120.00050 * 179.97438 * 8 7 5 11 11 C 1.37097 * 120.00048 * 180.02562 * 10 8 7 12 12 H 1.08001 * 120.00007 * 359.97438 * 11 10 8 13 13 C 1.38949 * 119.99928 * 180.02562 * 11 10 8 14 14 N 1.31414 * 120.00168 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00048 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47258 * 90.00213 * 15 13 11 17 17 H 1.48503 * 109.46990 * 210.00292 * 15 13 11 18 18 H 1.48499 * 109.47069 * 330.00217 * 15 13 11 19 19 N 1.46497 * 109.46989 * 239.99992 * 2 1 3 20 20 C 1.34783 * 120.00124 * 82.99338 * 19 2 1 21 21 O 1.21280 * 120.00003 * 359.97438 * 20 19 2 22 22 C 1.50698 * 120.00058 * 180.02562 * 20 19 2 23 23 C 1.50693 * 109.47188 * 179.97438 * 22 20 19 24 24 C 1.39872 * 125.90032 * 125.00019 * 23 22 20 25 25 C 1.35317 * 107.92210 * 180.21920 * 24 23 22 26 26 N 1.34952 * 107.74502 * 359.60965 * 25 24 23 27 27 C 1.46493 * 126.03824 * 180.14850 * 26 25 24 28 28 N 1.30842 * 125.89955 * 304.97316 * 23 22 20 29 29 H 1.09008 * 109.47347 * 300.00268 * 1 2 3 30 30 H 1.08996 * 109.47415 * 60.00332 * 1 2 3 31 31 H 1.08997 * 109.46999 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47358 * 295.16192 * 4 2 1 33 33 H 1.08999 * 109.47031 * 55.16686 * 4 2 1 34 34 H 1.09004 * 109.46805 * 54.12415 * 6 5 4 35 35 H 1.08997 * 109.47405 * 174.12477 * 6 5 4 36 36 H 1.09003 * 109.47510 * 294.12598 * 6 5 4 37 37 H 1.09007 * 109.46690 * 309.99713 * 7 5 4 38 38 H 1.08997 * 109.47234 * 69.99626 * 7 5 4 39 39 H 0.96993 * 119.99941 * 359.97438 * 10 8 7 40 40 H 0.96996 * 119.99984 * 179.97438 * 14 13 11 41 41 H 0.96996 * 119.99678 * 262.98386 * 19 2 1 42 42 H 1.09004 * 109.47088 * 59.99447 * 22 20 19 43 43 H 1.08997 * 109.46970 * 299.99514 * 22 20 19 44 44 H 1.08001 * 126.03618 * 359.95182 * 24 23 22 45 45 H 1.07999 * 126.12885 * 179.75734 * 25 24 23 46 46 H 1.09005 * 109.47205 * 270.25647 * 27 26 25 47 47 H 1.09000 * 109.47663 * 30.25696 * 27 26 25 48 48 H 1.08998 * 109.47243 * 150.25952 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5044 -0.8231 1.1922 6 6 3.9953 -1.8664 2.1023 7 6 4.1340 0.4711 1.4867 8 6 5.6077 0.3937 1.1816 9 8 6.0866 -0.6382 0.7608 10 7 6.3938 1.4711 1.3764 11 6 7.7344 1.4008 1.0984 12 1 8.1607 0.4820 0.7237 13 6 8.5448 2.5114 1.2997 14 7 9.8300 2.4439 1.0337 15 14 7.8076 4.1004 1.9486 16 1 7.8618 4.1015 3.4326 17 1 8.5803 5.2549 1.4241 18 1 6.3945 4.2078 1.5048 19 7 2.0183 -0.6906 -1.1962 20 6 2.1087 -0.0287 -2.3668 21 8 1.7853 1.1385 -2.4300 22 6 2.6104 -0.7393 -3.5974 23 6 2.6140 0.2161 -4.7627 24 6 3.7135 0.5169 -5.5733 25 6 3.3131 1.4174 -6.5006 26 7 2.0044 1.6706 -6.2900 27 6 1.1676 2.5866 -7.0689 28 7 1.5889 0.9071 -5.1915 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.7492 -0.1597 2.1371 33 1 1.6077 -1.7207 1.2937 34 1 3.4879 -2.8064 1.8848 35 1 5.0691 -1.9929 1.9647 36 1 3.7930 -1.5744 3.1328 37 1 3.6759 1.2462 0.8722 38 1 3.9933 0.7123 2.5403 39 1 6.0108 2.2964 1.7126 40 1 10.3956 3.2193 1.1739 41 1 2.2766 -1.6241 -1.1456 42 1 1.9574 -1.5829 -3.8215 43 1 3.6233 -1.1009 -3.4205 44 1 4.7075 0.1066 -5.4736 45 1 3.9298 1.8533 -7.2727 46 1 1.2144 3.5834 -6.6304 47 1 1.5291 2.6243 -8.0965 48 1 0.1364 2.2336 -7.0593 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754310829.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:34 Heat of formation + Delta-G solvation = 23.878588 kcal Electronic energy + Delta-G solvation = -29509.217934 eV Core-core repulsion = 25408.780925 eV Total energy + Delta-G solvation = -4100.437008 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.16663 -39.61388 -38.65832 -36.95282 -34.69698 -33.83707 -33.76397 -31.63561 -31.48024 -30.20740 -29.31579 -28.21931 -26.95776 -25.82197 -24.58086 -22.62758 -21.42095 -21.11404 -20.35943 -19.47443 -19.28497 -18.22951 -17.02633 -16.96576 -16.13066 -16.08581 -15.43550 -15.34248 -15.01256 -14.92849 -14.41353 -14.13706 -14.07876 -13.72152 -13.69254 -13.41239 -13.18339 -13.00547 -12.85245 -12.61673 -12.51311 -12.42343 -12.27415 -12.12308 -11.98222 -11.83248 -11.74070 -11.49494 -11.25514 -11.09989 -10.64649 -10.55715 -10.54247 -9.94325 -9.62836 -9.49897 -9.18007 -8.82722 -8.54641 -8.51636 -8.14678 -7.95385 -6.27904 -3.78715 1.92433 2.50526 2.74954 2.95313 3.07226 3.10131 3.18161 3.44784 3.78133 3.95795 4.14012 4.38606 4.65292 4.75109 4.80868 4.91982 4.98586 5.01353 5.18927 5.21816 5.23417 5.28792 5.30208 5.39954 5.42108 5.52428 5.58704 5.66172 5.69143 5.74438 5.83837 5.84401 5.89786 5.97903 6.02537 6.07516 6.15773 6.48372 6.65918 6.69908 7.01388 7.15266 7.28931 7.62053 7.75818 7.78428 8.18133 8.51435 8.63970 8.98824 9.46506 9.87575 10.85260 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008380 B = 0.003429 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3340.527524 B = 8163.208446 C =10275.524775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.149 3.851 3 H 0.083 0.917 4 C 0.043 3.957 5 N -0.514 5.514 6 C 0.022 3.978 7 C 0.041 3.959 8 C 0.456 3.544 9 O -0.560 6.560 10 N -0.592 5.592 11 C -0.302 4.302 12 H 0.120 0.880 13 C 0.042 3.958 14 N -0.882 5.882 15 Si 0.877 3.123 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.269 1.269 19 N -0.708 5.708 20 C 0.520 3.480 21 O -0.532 6.532 22 C -0.060 4.060 23 C 0.087 3.913 24 C -0.262 4.262 25 C 0.047 3.953 26 N -0.381 5.381 27 C 0.105 3.895 28 N -0.267 5.267 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.015 0.985 37 H 0.088 0.912 38 H 0.048 0.952 39 H 0.370 0.630 40 H 0.273 0.727 41 H 0.403 0.597 42 H 0.106 0.894 43 H 0.117 0.883 44 H 0.149 0.851 45 H 0.172 0.828 46 H 0.072 0.928 47 H 0.084 0.916 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.844 -4.258 -9.050 22.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.101 0.899 4 C -0.086 4.086 5 N -0.238 5.238 6 C -0.126 4.126 7 C -0.091 4.091 8 C 0.242 3.758 9 O -0.441 6.441 10 N -0.231 5.231 11 C -0.431 4.431 12 H 0.137 0.863 13 C -0.161 4.161 14 N -0.523 5.523 15 Si 0.703 3.297 16 H -0.197 1.197 17 H -0.202 1.202 18 H -0.194 1.194 19 N -0.360 5.360 20 C 0.305 3.695 21 O -0.408 6.408 22 C -0.102 4.102 23 C -0.080 4.080 24 C -0.291 4.291 25 C -0.098 4.098 26 N -0.164 5.164 27 C -0.037 4.037 28 N -0.089 5.089 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.033 0.967 37 H 0.106 0.894 38 H 0.066 0.934 39 H 0.202 0.798 40 H 0.083 0.917 41 H 0.237 0.763 42 H 0.124 0.876 43 H 0.135 0.865 44 H 0.167 0.833 45 H 0.189 0.811 46 H 0.091 0.909 47 H 0.103 0.897 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.718 -3.755 -9.801 23.224 hybrid contribution 0.460 1.218 1.219 1.784 sum -20.258 -2.537 -8.582 22.146 Atomic orbital electron populations 1.22142 0.95318 1.01964 1.02541 1.20878 0.93072 0.97591 0.84159 0.89862 1.22500 0.88955 1.00945 0.96174 1.61548 1.03409 1.05561 1.53295 1.22573 1.04248 0.93535 0.92241 1.21964 0.95308 0.92265 0.99531 1.19591 0.86986 0.84897 0.84371 1.90505 1.75019 1.29905 1.48715 1.42222 1.09140 1.11756 1.60017 1.19412 0.80838 1.01465 1.41372 0.86254 1.25017 0.95321 0.97969 0.97790 1.69619 1.03887 1.30949 1.47799 0.86707 0.79297 0.83927 0.79731 1.19682 1.20162 1.19450 1.45698 1.66948 1.15182 1.08143 1.20265 0.77688 0.87255 0.84322 1.90719 1.48547 1.16327 1.85168 1.20026 1.04795 0.96504 0.88853 1.21527 0.91888 0.97808 0.96820 1.21427 1.00707 1.06467 1.00489 1.22474 0.86065 0.99670 1.01595 1.48496 1.08027 1.35054 1.24791 1.21785 0.95728 0.92032 0.94162 1.77369 1.22998 1.08689 0.99875 0.91940 0.91774 0.92512 0.93444 0.90191 0.92148 0.88381 0.96682 0.89403 0.93395 0.79788 0.91673 0.76256 0.87623 0.86534 0.83284 0.81073 0.90933 0.89706 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.46 37.16 0.35 -1.29 16 2 C 0.15 1.80 2.55 -67.93 -0.17 1.63 16 3 H 0.08 1.24 6.41 -51.93 -0.33 0.90 16 4 C 0.04 0.48 4.54 -3.82 -0.02 0.46 16 5 N -0.51 -7.66 4.16 -244.37 -1.02 -8.67 16 6 C 0.02 0.31 9.17 60.06 0.55 0.86 16 7 C 0.04 0.70 5.28 -4.98 -0.03 0.67 16 8 C 0.46 10.40 7.52 -10.99 -0.08 10.31 16 9 O -0.56 -14.57 13.88 5.55 0.08 -14.50 16 10 N -0.59 -14.40 5.09 -10.97 -0.06 -14.46 16 11 C -0.30 -8.63 10.16 -14.93 -0.15 -8.78 16 12 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 13 C 0.04 1.16 5.50 -17.47 -0.10 1.07 16 14 N -0.88 -26.03 13.96 55.50 0.77 -25.26 16 15 Si 0.88 19.91 27.74 -169.99 -4.71 15.19 16 16 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.27 -5.69 6.52 56.52 0.37 -5.32 16 19 N -0.71 -8.77 4.83 -53.81 -0.26 -9.03 16 20 C 0.52 7.72 7.76 -10.98 -0.09 7.63 16 21 O -0.53 -10.10 15.24 5.56 0.08 -10.02 16 22 C -0.06 -0.74 6.28 -29.04 -0.18 -0.92 16 23 C 0.09 1.27 6.01 -82.41 -0.50 0.78 16 24 C -0.26 -3.46 10.72 -40.01 -0.43 -3.89 16 25 C 0.05 0.54 11.49 -17.22 -0.20 0.34 16 26 N -0.38 -4.80 4.01 -68.17 -0.27 -5.07 16 27 C 0.10 0.81 11.47 59.84 0.69 1.50 16 28 N -0.27 -4.19 11.92 33.67 0.40 -3.79 16 29 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.49 8.01 -51.93 -0.42 0.07 16 33 H 0.08 0.74 7.81 -51.93 -0.41 0.33 16 34 H 0.06 0.72 7.94 -51.93 -0.41 0.30 16 35 H 0.10 1.79 5.92 -51.93 -0.31 1.49 16 36 H 0.01 0.20 8.13 -51.93 -0.42 -0.22 16 37 H 0.09 1.46 6.66 -51.93 -0.35 1.12 16 38 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 39 H 0.37 8.06 5.76 -40.82 -0.24 7.83 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.40 4.22 8.58 -40.82 -0.35 3.86 16 42 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.12 1.28 8.12 -51.93 -0.42 0.86 16 44 H 0.15 1.73 8.06 -52.49 -0.42 1.30 16 45 H 0.17 1.29 8.06 -52.49 -0.42 0.86 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 399.72 15.07 6.02 6.02 Total: -1.00 -38.25 399.72 -6.74 -44.99 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -7.43 Total: 14.19 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: -0.35 Total: 10.39 kcal Atomic # 7 Polarization: -65.85 SS G_CDS: -0.43 Total: -66.28 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: 0.16 Total: -24.51 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.71 Total: 15.19 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -38.25 -6.74 -44.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754310829.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.870 kcal (2) G-P(sol) polarization free energy of solvation -38.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds