Wall clock time and date at job start Tue Mar 31 2020 19:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47616 * 2 1 4 4 N 1.46507 * 109.47206 * 119.99921 * 2 1 3 5 5 C 1.36930 * 119.99582 * 274.99899 * 4 2 1 6 6 H 1.07997 * 120.00755 * 0.02562 * 5 4 2 7 7 C 1.38819 * 119.99545 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00043 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00022 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47436 * 89.99529 * 9 7 5 11 11 H 1.48498 * 109.47065 * 209.99747 * 9 7 5 12 12 H 1.48504 * 109.47029 * 329.99394 * 9 7 5 13 13 C 1.53004 * 109.47161 * 239.99692 * 2 1 3 14 14 H 1.09002 * 110.88605 * 299.30077 * 13 2 1 15 15 C 1.55158 * 111.00209 * 63.17886 * 13 2 1 16 16 C 1.54432 * 102.89115 * 153.59131 * 15 13 2 17 17 N 1.47014 * 107.28579 * 337.81771 * 16 15 13 18 18 C 1.34770 * 125.65286 * 178.90570 * 17 16 15 19 19 O 1.21279 * 120.00290 * 180.02562 * 18 17 16 20 20 C 1.50702 * 120.00023 * 0.03434 * 18 17 16 21 21 O 1.42898 * 109.47411 * 180.02562 * 20 18 17 22 22 C 1.42898 * 113.99911 * 180.02562 * 21 20 18 23 23 C 1.50703 * 109.47262 * 180.02562 * 22 21 20 24 24 N 1.30518 * 126.34670 * 90.01661 * 23 22 21 25 25 N 1.28600 * 109.67117 * 179.97438 * 24 23 22 26 26 C 1.30512 * 109.67586 * 0.02562 * 25 24 23 27 27 N 1.35497 * 126.34451 * 269.71848 * 23 22 21 28 28 C 1.46494 * 126.98119 * 0.02562 * 27 23 22 29 29 C 1.47427 * 108.70101 * 358.93455 * 17 16 15 30 30 H 1.09002 * 109.47616 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47193 * 300.00029 * 1 2 3 32 32 H 1.09004 * 109.47272 * 60.00191 * 1 2 3 33 33 H 0.97001 * 119.99526 * 94.99730 * 4 2 1 34 34 H 0.96997 * 119.99959 * 180.02562 * 8 7 5 35 35 H 1.08996 * 110.72495 * 271.98095 * 15 13 2 36 36 H 1.09005 * 110.72041 * 35.25394 * 15 13 2 37 37 H 1.09003 * 109.87846 * 218.38943 * 16 15 13 38 38 H 1.09004 * 110.00161 * 97.31095 * 16 15 13 39 39 H 1.09002 * 109.47322 * 300.00693 * 20 18 17 40 40 H 1.09009 * 109.46555 * 60.00399 * 20 18 17 41 41 H 1.09005 * 109.47016 * 299.99962 * 22 21 20 42 42 H 1.08998 * 109.47693 * 59.99897 * 22 21 20 43 43 H 1.07996 * 126.35024 * 180.02562 * 26 25 24 44 44 H 1.09009 * 109.47119 * 90.00612 * 28 27 23 45 45 H 1.08999 * 109.47602 * 210.00579 * 28 27 23 46 46 H 1.09000 * 109.47546 * 330.00832 * 28 27 23 47 47 H 1.09001 * 110.36908 * 265.29297 * 29 17 16 48 48 H 1.09000 * 110.46067 * 143.01656 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0074 2.3757 6 1 1.8919 1.0403 2.4243 7 6 2.6123 -0.6617 3.5090 8 7 2.9253 -1.9387 3.4499 9 14 2.7901 0.2700 5.1183 10 1 1.5225 0.1779 5.8863 11 1 3.8951 -0.3225 5.9138 12 1 3.0941 1.6955 4.8339 13 6 2.0399 -0.7213 -1.2492 14 1 1.6996 -1.7567 -1.2663 15 6 1.6091 0.0270 -2.5383 16 6 2.7020 -0.3761 -3.5523 17 7 3.8819 -0.7922 -2.7804 18 6 5.0434 -1.2371 -3.2995 19 8 5.9540 -1.5548 -2.5643 20 6 5.2106 -1.3396 -4.7937 21 8 6.5175 -1.8332 -5.0941 22 6 6.7807 -1.9682 -6.4921 23 6 8.1790 -2.4937 -6.6916 24 7 8.5302 -3.7484 -6.7682 25 7 9.8018 -3.8323 -6.9409 26 6 10.3196 -2.6350 -6.9817 27 7 9.3038 -1.7511 -6.8303 28 6 9.4022 -0.2895 -6.8158 29 6 3.5841 -0.6428 -1.3443 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.2489 -1.6318 1.1526 34 1 3.2487 -2.3960 4.2419 35 1 0.6285 -0.3123 -2.8718 36 1 1.6111 1.1051 -2.3773 37 1 2.9537 0.4757 -4.1841 38 1 2.3515 -1.2040 -4.1688 39 1 4.4630 -2.0227 -5.1970 40 1 5.0820 -0.3544 -5.2421 41 1 6.0655 -2.6638 -6.9310 42 1 6.6853 -0.9959 -6.9754 43 1 11.3635 -2.3933 -7.1164 44 1 9.5651 0.0536 -5.7940 45 1 10.2372 0.0248 -7.4420 46 1 8.4775 0.1408 -7.2004 47 1 3.9379 0.3224 -0.9818 48 1 4.0409 -1.4518 -0.7742 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754803134.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:53 Heat of formation + Delta-G solvation = 24.810234 kcal Electronic energy + Delta-G solvation = -28712.828329 eV Core-core repulsion = 24612.431720 eV Total energy + Delta-G solvation = -4100.396609 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.45795 -40.12684 -38.49445 -37.35044 -35.44079 -35.20879 -32.56539 -32.02686 -30.68230 -29.34604 -28.46763 -28.19842 -27.70284 -26.37013 -23.94749 -23.21009 -22.75830 -21.56361 -21.39247 -19.68302 -19.37030 -17.88204 -17.43272 -17.25448 -16.94958 -16.69272 -16.33200 -15.84723 -15.56163 -15.29495 -14.78625 -14.64526 -14.09262 -13.90390 -13.81418 -13.67953 -13.48366 -13.08943 -12.96842 -12.74227 -12.44422 -12.30798 -12.15010 -12.01828 -11.83026 -11.68303 -11.36795 -10.89327 -10.80248 -10.73071 -10.61467 -10.58840 -10.56376 -10.24303 -10.21424 -9.92752 -9.80540 -9.63802 -9.59879 -8.90702 -8.57250 -6.95825 -5.74533 -3.03942 1.26330 2.03167 2.39466 2.61085 2.77132 3.44691 3.49482 3.51321 3.51992 4.00453 4.09218 4.16209 4.33911 4.40957 4.52273 4.58212 4.61424 4.67694 4.73498 4.80076 4.85727 4.90930 4.98636 5.13627 5.26811 5.39595 5.44250 5.55150 5.62089 5.72056 5.85002 5.86067 5.89774 6.01090 6.13991 6.24897 6.30323 6.37579 6.39150 6.49520 6.57914 6.61782 6.83305 7.05474 7.53719 7.70901 8.19624 8.37853 8.43255 9.54610 10.11228 10.45432 11.47899 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015579 B = 0.002059 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.888042 B =13594.279052 C =14716.078483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.724 5.724 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.930 5.930 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.102 4.102 14 H 0.082 0.918 15 C -0.124 4.124 16 C 0.097 3.903 17 N -0.619 5.619 18 C 0.525 3.475 19 O -0.514 6.514 20 C 0.051 3.949 21 O -0.356 6.356 22 C 0.150 3.850 23 C 0.174 3.826 24 N -0.270 5.270 25 N -0.296 5.296 26 C 0.156 3.844 27 N -0.469 5.469 28 C 0.071 3.929 29 C 0.122 3.878 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.037 0.963 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.222 0.778 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.072 0.928 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.208 7.633 -27.948 29.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.074 3.926 3 H 0.067 0.933 4 N -0.366 5.366 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.578 5.578 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.122 4.122 14 H 0.100 0.900 15 C -0.162 4.162 16 C -0.026 4.026 17 N -0.355 5.355 18 C 0.311 3.689 19 O -0.388 6.388 20 C -0.029 4.029 21 O -0.273 6.273 22 C 0.071 3.929 23 C -0.093 4.093 24 N -0.112 5.112 25 N -0.136 5.136 26 C -0.131 4.131 27 N -0.160 5.160 28 C -0.072 4.072 29 C 0.000 4.000 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.238 0.762 44 H 0.107 0.893 45 H 0.113 0.887 46 H 0.109 0.891 47 H 0.090 0.910 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.864 6.033 -27.309 28.575 hybrid contribution 0.143 1.734 0.775 1.905 sum 6.008 7.768 -26.533 28.292 Atomic orbital electron populations 1.22444 0.99077 1.00910 0.99970 1.20151 0.91919 0.95127 0.85369 0.93338 1.42421 1.78161 1.10737 1.05254 1.19183 1.36760 0.93823 0.87294 0.91236 1.24743 1.02094 0.95963 0.98056 1.69654 1.50643 1.08656 1.28888 0.86224 0.77257 0.78794 0.84097 1.21802 1.21802 1.20817 1.22683 0.93807 1.00616 0.95104 0.89989 1.22691 0.97544 1.01344 0.94622 1.22130 0.86192 0.99224 0.95029 1.48524 1.12913 1.65013 1.09066 1.19681 0.81701 0.78094 0.89425 1.90793 1.39391 1.47449 1.61216 1.22233 0.85963 1.00157 0.94506 1.88105 1.31250 1.86465 1.21431 1.20486 0.88204 1.00155 0.84016 1.24250 0.90648 0.88589 1.05811 1.74287 1.05641 1.14870 1.16410 1.74305 1.01458 1.19865 1.17934 1.26520 0.96410 0.85809 1.04411 1.46187 1.07462 1.09525 1.52824 1.22179 1.04997 0.75133 1.04913 1.22282 0.95534 1.03042 0.79094 0.93492 0.92765 0.94408 0.78236 0.93472 0.89938 0.90283 0.91658 0.91514 0.89728 0.90131 0.89060 0.91102 0.76196 0.89286 0.88689 0.89088 0.91010 0.89677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.31 37.15 0.35 -2.34 16 2 C 0.18 3.35 2.40 -67.93 -0.16 3.19 16 3 H 0.05 0.90 8.07 -51.93 -0.42 0.48 16 4 N -0.72 -17.43 4.90 -53.42 -0.26 -17.70 16 5 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 6 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -28.29 13.06 55.49 0.72 -27.56 16 9 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C -0.10 -1.51 2.63 -88.47 -0.23 -1.74 16 14 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 15 C -0.12 -1.25 5.45 -24.84 -0.14 -1.39 16 16 C 0.10 0.88 6.49 -3.01 -0.02 0.86 16 17 N -0.62 -8.38 3.33 -170.45 -0.57 -8.95 16 18 C 0.52 7.85 7.93 -10.99 -0.09 7.76 16 19 O -0.51 -10.61 16.76 -14.35 -0.24 -10.85 16 20 C 0.05 0.49 5.61 36.01 0.20 0.70 16 21 O -0.36 -4.33 9.86 -55.14 -0.54 -4.87 16 22 C 0.15 1.23 6.29 36.01 0.23 1.46 16 23 C 0.17 1.91 7.66 -154.98 -1.19 0.73 16 24 N -0.27 -3.89 12.21 32.80 0.40 -3.48 16 25 N -0.30 -3.96 12.21 29.69 0.36 -3.60 16 26 C 0.16 1.36 12.74 -89.95 -1.15 0.22 16 27 N -0.47 -3.81 3.15 -122.69 -0.39 -4.20 16 28 C 0.07 0.23 11.04 59.84 0.66 0.90 16 29 C 0.12 2.03 6.16 -2.53 -0.02 2.01 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.04 0.49 7.38 -51.93 -0.38 0.10 16 33 H 0.38 10.02 7.80 -40.82 -0.32 9.70 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 36 H 0.08 0.77 8.04 -51.93 -0.42 0.35 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.49 8.14 -51.92 -0.42 0.06 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.30 7.21 -51.93 -0.37 -0.07 16 43 H 0.22 0.83 8.06 -52.49 -0.42 0.40 16 44 H 0.09 0.34 8.14 -51.92 -0.42 -0.09 16 45 H 0.09 0.06 8.14 -51.93 -0.42 -0.37 16 46 H 0.09 0.16 7.19 -51.93 -0.37 -0.21 16 47 H 0.07 1.27 8.03 -51.93 -0.42 0.85 16 48 H 0.08 1.72 8.04 -51.93 -0.42 1.31 16 LS Contribution 400.97 15.07 6.04 6.04 Total: -1.00 -39.94 400.97 -9.03 -48.97 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -7.74 Total: 3.51 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -1.80 Total: 5.24 kcal Atomic # 7 Polarization: -65.77 SS G_CDS: 0.27 Total: -65.50 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.78 Total: -15.73 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -39.94 -9.03 -48.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754803134.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.779 kcal (2) G-P(sol) polarization free energy of solvation -39.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds