Wall clock time and date at job start Tue Mar 31 2020 19:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47616 * 2 1 4 4 N 1.46507 * 109.47206 * 119.99921 * 2 1 3 5 5 C 1.36930 * 119.99582 * 274.99899 * 4 2 1 6 6 H 1.07997 * 120.00755 * 0.02562 * 5 4 2 7 7 C 1.38819 * 119.99545 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00043 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00022 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47436 * 89.99529 * 9 7 5 11 11 H 1.48498 * 109.47065 * 209.99747 * 9 7 5 12 12 H 1.48504 * 109.47029 * 329.99394 * 9 7 5 13 13 C 1.53004 * 109.47161 * 239.99692 * 2 1 3 14 14 H 1.09002 * 110.88605 * 299.30077 * 13 2 1 15 15 C 1.55158 * 111.00209 * 63.17886 * 13 2 1 16 16 C 1.54432 * 102.89115 * 153.59131 * 15 13 2 17 17 N 1.47014 * 107.28579 * 337.81771 * 16 15 13 18 18 C 1.34770 * 125.65286 * 178.90570 * 17 16 15 19 19 O 1.21279 * 120.00290 * 180.02562 * 18 17 16 20 20 C 1.50702 * 120.00023 * 0.03434 * 18 17 16 21 21 O 1.42898 * 109.47411 * 180.02562 * 20 18 17 22 22 C 1.42898 * 113.99911 * 180.02562 * 21 20 18 23 23 C 1.50703 * 109.47262 * 180.02562 * 22 21 20 24 24 N 1.30518 * 126.34670 * 90.01661 * 23 22 21 25 25 N 1.28600 * 109.67117 * 179.97438 * 24 23 22 26 26 C 1.30512 * 109.67586 * 0.02562 * 25 24 23 27 27 N 1.35497 * 126.34451 * 269.71848 * 23 22 21 28 28 C 1.46494 * 126.98119 * 0.02562 * 27 23 22 29 29 C 1.47427 * 108.70101 * 358.93455 * 17 16 15 30 30 H 1.09002 * 109.47616 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47193 * 300.00029 * 1 2 3 32 32 H 1.09004 * 109.47272 * 60.00191 * 1 2 3 33 33 H 0.97001 * 119.99526 * 94.99730 * 4 2 1 34 34 H 0.96997 * 119.99959 * 180.02562 * 8 7 5 35 35 H 1.08996 * 110.72495 * 271.98095 * 15 13 2 36 36 H 1.09005 * 110.72041 * 35.25394 * 15 13 2 37 37 H 1.09003 * 109.87846 * 218.38943 * 16 15 13 38 38 H 1.09004 * 110.00161 * 97.31095 * 16 15 13 39 39 H 1.09002 * 109.47322 * 300.00693 * 20 18 17 40 40 H 1.09009 * 109.46555 * 60.00399 * 20 18 17 41 41 H 1.09005 * 109.47016 * 299.99962 * 22 21 20 42 42 H 1.08998 * 109.47693 * 59.99897 * 22 21 20 43 43 H 1.07996 * 126.35024 * 180.02562 * 26 25 24 44 44 H 1.09009 * 109.47119 * 90.00612 * 28 27 23 45 45 H 1.08999 * 109.47602 * 210.00579 * 28 27 23 46 46 H 1.09000 * 109.47546 * 330.00832 * 28 27 23 47 47 H 1.09001 * 110.36908 * 265.29297 * 29 17 16 48 48 H 1.09000 * 110.46067 * 143.01656 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0074 2.3757 6 1 1.8919 1.0403 2.4243 7 6 2.6123 -0.6617 3.5090 8 7 2.9253 -1.9387 3.4499 9 14 2.7901 0.2700 5.1183 10 1 1.5225 0.1779 5.8863 11 1 3.8951 -0.3225 5.9138 12 1 3.0941 1.6955 4.8339 13 6 2.0399 -0.7213 -1.2492 14 1 1.6996 -1.7567 -1.2663 15 6 1.6091 0.0270 -2.5383 16 6 2.7020 -0.3761 -3.5523 17 7 3.8819 -0.7922 -2.7804 18 6 5.0434 -1.2371 -3.2995 19 8 5.9540 -1.5548 -2.5643 20 6 5.2106 -1.3396 -4.7937 21 8 6.5175 -1.8332 -5.0941 22 6 6.7807 -1.9682 -6.4921 23 6 8.1790 -2.4937 -6.6916 24 7 8.5302 -3.7484 -6.7682 25 7 9.8018 -3.8323 -6.9409 26 6 10.3196 -2.6350 -6.9817 27 7 9.3038 -1.7511 -6.8303 28 6 9.4022 -0.2895 -6.8158 29 6 3.5841 -0.6428 -1.3443 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.2489 -1.6318 1.1526 34 1 3.2487 -2.3960 4.2419 35 1 0.6285 -0.3123 -2.8718 36 1 1.6111 1.1051 -2.3773 37 1 2.9537 0.4757 -4.1841 38 1 2.3515 -1.2040 -4.1688 39 1 4.4630 -2.0227 -5.1970 40 1 5.0820 -0.3544 -5.2421 41 1 6.0655 -2.6638 -6.9310 42 1 6.6853 -0.9959 -6.9754 43 1 11.3635 -2.3933 -7.1164 44 1 9.5651 0.0536 -5.7940 45 1 10.2372 0.0248 -7.4420 46 1 8.4775 0.1408 -7.2004 47 1 3.9379 0.3224 -0.9818 48 1 4.0409 -1.4518 -0.7742 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754803134.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:52 Heat of formation + Delta-G solvation = -3.811086 kcal Electronic energy + Delta-G solvation = -28714.069443 eV Core-core repulsion = 24612.431720 eV Total energy + Delta-G solvation = -4101.637723 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.15643 -41.21157 -39.44894 -38.44232 -36.77227 -36.03458 -34.31807 -32.79211 -32.10977 -30.34783 -29.97543 -28.90864 -28.40521 -27.11859 -25.88450 -24.26510 -23.42985 -22.86289 -22.05154 -21.06291 -20.39811 -19.17205 -18.56824 -18.09508 -17.89178 -17.55922 -17.17573 -16.86513 -16.47043 -16.43254 -15.93572 -15.68523 -15.36124 -15.32237 -14.94704 -14.46692 -14.31754 -14.19118 -14.01052 -13.69133 -13.49802 -13.40372 -13.21315 -13.08073 -12.97611 -12.85122 -12.63897 -12.60341 -12.35783 -12.21664 -12.00361 -11.68557 -11.52728 -11.46413 -11.34777 -11.16962 -10.97530 -10.90952 -10.86204 -10.46119 -9.68527 -8.98961 -7.92992 -5.20473 0.60056 1.44814 1.46875 1.48555 1.53090 1.54799 1.64701 1.87571 2.56037 2.82445 3.30890 3.41133 3.52530 3.65550 3.69720 3.80614 3.84128 3.88389 3.93040 4.12654 4.17725 4.19964 4.25798 4.38640 4.39166 4.48484 4.57244 4.58615 4.66730 4.68287 4.76923 4.86523 4.88531 4.92318 5.02665 5.07697 5.12725 5.14203 5.26966 5.36135 5.44175 5.53832 5.67713 5.83372 5.92252 6.29305 6.52123 7.11226 7.34716 7.63008 8.13788 8.33777 9.30840 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015579 B = 0.002059 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.888042 B =13594.279052 C =14716.078483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.177 3.823 3 H 0.047 0.953 4 N -0.740 5.740 5 C -0.229 4.229 6 H 0.078 0.922 7 C -0.083 4.083 8 N -0.973 5.973 9 Si 0.968 3.032 10 H -0.286 1.286 11 H -0.302 1.302 12 H -0.268 1.268 13 C -0.094 4.094 14 H 0.073 0.927 15 C -0.112 4.112 16 C 0.092 3.908 17 N -0.615 5.615 18 C 0.511 3.489 19 O -0.592 6.592 20 C 0.062 3.938 21 O -0.400 6.400 22 C 0.150 3.850 23 C 0.164 3.836 24 N -0.327 5.327 25 N -0.353 5.353 26 C 0.167 3.833 27 N -0.466 5.466 28 C 0.062 3.938 29 C 0.124 3.876 30 H 0.039 0.961 31 H 0.032 0.968 32 H 0.084 0.916 33 H 0.368 0.632 34 H 0.248 0.752 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.117 0.883 40 H 0.131 0.869 41 H 0.103 0.897 42 H 0.119 0.881 43 H 0.265 0.735 44 H 0.082 0.918 45 H 0.126 0.874 46 H 0.112 0.888 47 H 0.054 0.946 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.549 11.001 -31.632 33.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.069 3.931 3 H 0.065 0.935 4 N -0.379 5.379 5 C -0.361 4.361 6 H 0.096 0.904 7 C -0.275 4.275 8 N -0.625 5.625 9 Si 0.798 3.202 10 H -0.213 1.213 11 H -0.229 1.229 12 H -0.193 1.193 13 C -0.114 4.114 14 H 0.091 0.909 15 C -0.150 4.150 16 C -0.028 4.028 17 N -0.350 5.350 18 C 0.300 3.700 19 O -0.472 6.472 20 C -0.016 4.016 21 O -0.318 6.318 22 C 0.072 3.928 23 C -0.106 4.106 24 N -0.170 5.170 25 N -0.192 5.192 26 C -0.121 4.121 27 N -0.156 5.156 28 C -0.079 4.079 29 C 0.001 3.999 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.103 0.897 33 H 0.200 0.800 34 H 0.056 0.944 35 H 0.131 0.869 36 H 0.109 0.891 37 H 0.124 0.876 38 H 0.116 0.884 39 H 0.135 0.865 40 H 0.149 0.851 41 H 0.121 0.879 42 H 0.136 0.864 43 H 0.280 0.720 44 H 0.101 0.899 45 H 0.145 0.855 46 H 0.131 0.869 47 H 0.072 0.928 48 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 4.128 9.483 -31.072 32.748 hybrid contribution 0.672 0.784 1.848 2.117 sum 4.799 10.267 -29.224 31.345 Atomic orbital electron populations 1.22268 0.96818 1.00891 1.01204 1.20458 0.93283 0.94759 0.84600 0.93494 1.42696 1.78477 1.10227 1.06532 1.19611 1.34099 0.94158 0.88256 0.90387 1.25554 1.03469 0.96866 1.01578 1.69830 1.53055 1.10391 1.29196 0.85200 0.76744 0.78117 0.80123 1.21346 1.22913 1.19253 1.22494 0.92047 1.00590 0.96275 0.90879 1.22750 0.99427 1.01368 0.91496 1.22536 0.83661 1.01982 0.94647 1.48617 1.14203 1.64238 1.07931 1.20899 0.80766 0.76465 0.91820 1.90755 1.42069 1.50856 1.63491 1.22337 0.85864 1.03570 0.89870 1.88041 1.32626 1.87178 1.23933 1.20810 0.86769 1.02813 0.82417 1.24819 0.92558 0.88269 1.04912 1.74142 1.06539 1.17490 1.18784 1.74158 1.01702 1.22739 1.20623 1.27334 0.98100 0.84875 1.01824 1.46483 1.06380 1.11190 1.51569 1.22573 1.07609 0.72233 1.05456 1.21956 0.96815 0.99833 0.81259 0.94134 0.94903 0.89708 0.80040 0.94372 0.86895 0.89121 0.87560 0.88445 0.86536 0.85138 0.87949 0.86352 0.71966 0.89893 0.85521 0.86929 0.92793 0.95180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.67 9.31 71.98 0.67 -4.00 16 2 C 0.18 6.34 2.40 44.99 0.11 6.44 16 3 H 0.05 1.70 8.07 -2.39 -0.02 1.68 16 4 N -0.74 -36.80 4.90 -322.93 -1.58 -38.39 16 5 C -0.23 -12.71 9.93 84.04 0.83 -11.88 16 6 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 7 C -0.08 -4.89 5.50 84.86 0.47 -4.42 16 8 N -0.97 -62.01 13.06 21.65 0.28 -61.73 16 9 Si 0.97 47.43 29.55 68.60 2.03 49.46 16 10 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 11 H -0.30 -15.17 7.11 99.48 0.71 -14.47 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 13 C -0.09 -2.69 2.63 -9.40 -0.02 -2.72 16 14 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 15 C -0.11 -1.75 5.45 31.82 0.17 -1.58 16 16 C 0.09 1.20 6.49 86.77 0.56 1.76 16 17 N -0.62 -15.84 3.33 -811.59 -2.70 -18.54 16 18 C 0.51 15.03 7.93 87.66 0.69 15.72 16 19 O -0.59 -25.97 16.76 16.01 0.27 -25.70 16 20 C 0.06 0.98 5.61 71.24 0.40 1.38 16 21 O -0.40 -9.08 9.86 -129.94 -1.28 -10.36 16 22 C 0.15 2.05 6.29 71.24 0.45 2.50 16 23 C 0.16 3.46 7.66 137.98 1.06 4.52 16 24 N -0.33 -9.76 12.21 -50.15 -0.61 -10.38 16 25 N -0.35 -9.78 12.21 -59.99 -0.73 -10.51 16 26 C 0.17 2.77 12.74 180.11 2.30 5.07 16 27 N -0.47 -6.80 3.15 -542.08 -1.71 -8.50 16 28 C 0.06 0.22 11.04 127.77 1.41 1.63 16 29 C 0.12 4.31 6.16 86.85 0.53 4.85 16 30 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 1.81 7.38 -2.38 -0.02 1.79 16 33 H 0.37 20.36 7.80 -92.71 -0.72 19.64 16 34 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 35 H 0.11 1.18 8.12 -2.39 -0.02 1.16 16 36 H 0.09 1.27 8.04 -2.38 -0.02 1.25 16 37 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.13 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.12 0.42 7.21 -2.39 -0.02 0.40 16 43 H 0.26 1.38 8.06 -2.91 -0.02 1.36 16 44 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 45 H 0.13 -0.36 8.14 -2.39 -0.02 -0.38 16 46 H 0.11 -0.09 7.19 -2.39 -0.02 -0.10 16 47 H 0.05 2.01 8.03 -2.39 -0.02 1.99 16 48 H 0.03 1.34 8.04 -2.39 -0.02 1.32 16 Total: -1.00 -100.02 400.97 3.83 -96.18 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.24 Total: 19.18 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: 9.63 Total: 19.29 kcal Atomic # 7 Polarization: -140.99 SS G_CDS: -7.05 Total: -148.04 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -1.01 Total: -36.06 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -100.02 3.83 -96.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754803134.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.370 kcal (2) G-P(sol) polarization free energy of solvation -100.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds