Wall clock time and date at job start Tue Mar 31 2020 19:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46622 * 2 1 4 4 N 1.46495 * 109.47129 * 239.99887 * 2 1 3 5 5 C 1.36942 * 119.99892 * 85.00073 * 4 2 1 6 6 H 1.07998 * 120.00123 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00065 * 179.97438 * 5 4 2 8 8 N 1.31622 * 120.00064 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00182 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47035 * 90.00036 * 9 7 5 11 11 H 1.48497 * 109.47161 * 210.00254 * 9 7 5 12 12 H 1.48501 * 109.47098 * 329.99765 * 9 7 5 13 13 C 1.52999 * 109.47044 * 119.99854 * 2 1 3 14 14 H 1.09005 * 110.91304 * 59.90963 * 13 2 1 15 15 C 1.55273 * 111.09886 * 183.82280 * 13 2 1 16 16 C 1.54331 * 103.00311 * 153.44892 * 15 13 2 17 17 N 1.47012 * 107.27486 * 337.88522 * 16 15 13 18 18 C 1.34776 * 125.65297 * 178.96514 * 17 16 15 19 19 O 1.21277 * 120.00518 * 179.97438 * 18 17 16 20 20 C 1.50705 * 119.99690 * 359.97026 * 18 17 16 21 21 O 1.42896 * 109.47448 * 180.02562 * 20 18 17 22 22 C 1.42897 * 114.00330 * 180.02562 * 21 20 18 23 23 C 1.50700 * 109.47273 * 180.02562 * 22 21 20 24 24 N 1.30516 * 126.35026 * 90.01860 * 23 22 21 25 25 N 1.28598 * 109.67579 * 179.97438 * 24 23 22 26 26 C 1.30521 * 109.66974 * 0.02562 * 25 24 23 27 27 N 1.35491 * 107.30830 * 359.77240 * 26 25 24 28 28 C 1.46504 * 126.98043 * 180.22355 * 27 26 25 29 29 C 1.47426 * 108.70231 * 358.94133 * 17 16 15 30 30 H 1.09002 * 109.47195 * 185.07978 * 1 2 3 31 31 H 1.08995 * 109.47201 * 305.08424 * 1 2 3 32 32 H 1.09001 * 109.47040 * 65.08768 * 1 2 3 33 33 H 0.96993 * 120.00114 * 264.99419 * 4 2 1 34 34 H 0.96993 * 120.00184 * 180.02562 * 8 7 5 35 35 H 1.08994 * 110.62588 * 35.09552 * 15 13 2 36 36 H 1.08998 * 110.75727 * 271.86260 * 15 13 2 37 37 H 1.09004 * 109.87631 * 218.46368 * 16 15 13 38 38 H 1.08999 * 110.00825 * 97.37821 * 16 15 13 39 39 H 1.09002 * 109.47199 * 300.00843 * 20 18 17 40 40 H 1.08999 * 109.46846 * 60.00109 * 20 18 17 41 41 H 1.09002 * 109.47033 * 300.00139 * 22 21 20 42 42 H 1.09000 * 109.47231 * 60.00063 * 22 21 20 43 43 H 1.08003 * 126.34098 * 179.97438 * 26 25 24 44 44 H 1.08997 * 109.46910 * 270.15660 * 28 27 26 45 45 H 1.08995 * 109.47219 * 30.15619 * 28 27 26 46 46 H 1.08999 * 109.46872 * 150.15548 * 28 27 26 47 47 H 1.09002 * 110.36557 * 142.97124 * 29 17 16 48 48 H 1.09004 * 110.36608 * 265.17992 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3757 6 1 1.8919 1.0403 -2.4244 7 6 2.6124 -0.6617 -3.5090 8 7 2.9264 -1.9385 -3.4497 9 14 2.7915 0.2703 -5.1179 10 1 4.1538 0.8554 -5.2020 11 1 2.5815 -0.6609 -6.2554 12 1 1.7814 1.3574 -5.1753 13 6 2.0400 -0.7212 1.2493 14 1 1.6884 -1.7527 1.2738 15 6 3.5891 -0.6602 1.3367 16 6 3.8561 -0.7732 2.8525 17 7 2.6287 -0.3535 3.5445 18 6 2.4490 -0.3291 4.8800 19 8 1.3897 0.0377 5.3428 20 6 3.5645 -0.7577 5.7983 21 8 3.1338 -0.6444 7.1561 22 6 4.1227 -1.0282 8.1135 23 6 3.5636 -0.8705 9.5040 24 7 2.9224 -1.7787 10.1876 25 7 2.5902 -1.3027 11.3351 26 6 3.0039 -0.0689 11.4354 27 7 3.6376 0.2391 10.2782 28 6 4.2717 1.5139 9.9329 29 6 1.6272 0.0369 2.5355 30 1 -0.3634 -1.0236 0.0910 31 1 -0.3633 0.5906 0.8409 32 1 -0.3633 0.4329 -0.9321 33 1 2.2491 -1.6317 -1.1525 34 1 3.2504 -2.3956 -4.2414 35 1 3.9584 0.2896 0.9499 36 1 4.0394 -1.4967 0.8024 37 1 4.6820 -0.1195 3.1331 38 1 4.0945 -1.8043 3.1133 39 1 3.8312 -1.7933 5.5872 40 1 4.4330 -0.1190 5.6377 41 1 4.4017 -2.0692 7.9504 42 1 5.0024 -0.3944 8.0012 43 1 2.8691 0.5842 12.2850 44 1 3.5411 2.1648 9.4529 45 1 4.6440 1.9917 10.8391 46 1 5.1018 1.3335 9.2499 47 1 0.6302 -0.2688 2.8527 48 1 1.6576 1.1135 2.3676 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754803136.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:58 Heat of formation + Delta-G solvation = 23.326786 kcal Electronic energy + Delta-G solvation = -28530.946539 eV Core-core repulsion = 24430.485603 eV Total energy + Delta-G solvation = -4100.460936 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.51436 -40.21913 -38.53489 -37.41701 -35.49484 -35.25459 -32.56620 -32.07179 -30.72423 -29.54026 -28.71539 -28.16679 -27.37816 -26.40558 -24.36352 -22.98986 -22.81276 -21.50949 -21.43763 -19.69091 -19.50135 -17.93990 -17.48837 -17.29967 -17.02035 -16.78535 -16.39190 -15.92973 -15.66514 -15.35220 -14.86919 -14.59602 -14.08346 -13.95290 -13.84805 -13.56068 -13.46319 -13.25996 -12.87715 -12.72563 -12.63215 -12.34827 -12.30662 -12.11191 -11.88525 -11.76608 -11.25797 -10.92202 -10.79248 -10.76074 -10.64514 -10.62325 -10.44538 -10.29012 -10.24373 -9.99408 -9.87718 -9.70863 -9.66076 -8.95369 -8.69584 -7.00399 -5.80828 -3.09318 1.20805 1.97369 2.32760 2.48171 2.68709 3.39884 3.44458 3.46129 3.47241 3.95308 4.04356 4.11283 4.29250 4.35657 4.47608 4.53768 4.64194 4.69500 4.73134 4.78337 4.81040 4.87992 5.06443 5.08959 5.24971 5.39086 5.41180 5.49976 5.62373 5.66491 5.83973 5.86161 5.92756 6.01537 6.11318 6.17224 6.32267 6.33325 6.39184 6.48225 6.54618 6.61416 6.83839 7.07169 7.41583 7.66616 8.05499 8.32240 8.37730 9.49270 10.06139 10.41157 11.41714 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033452 B = 0.001710 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.828471 B =16374.674300 C =16535.001472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.186 3.814 3 H 0.049 0.951 4 N -0.722 5.722 5 C -0.237 4.237 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.102 4.102 14 H 0.082 0.918 15 C -0.115 4.115 16 C 0.094 3.906 17 N -0.616 5.616 18 C 0.528 3.472 19 O -0.523 6.523 20 C 0.050 3.950 21 O -0.357 6.357 22 C 0.150 3.850 23 C 0.174 3.826 24 N -0.270 5.270 25 N -0.296 5.296 26 C 0.156 3.844 27 N -0.468 5.468 28 C 0.071 3.929 29 C 0.116 3.884 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.056 0.944 33 H 0.383 0.617 34 H 0.255 0.745 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.072 0.928 43 H 0.222 0.778 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.078 0.922 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.492 6.534 25.946 28.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.363 5.363 5 C -0.368 4.368 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.581 5.581 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.122 4.122 14 H 0.100 0.900 15 C -0.153 4.153 16 C -0.029 4.029 17 N -0.352 5.352 18 C 0.315 3.685 19 O -0.398 6.398 20 C -0.030 4.030 21 O -0.274 6.274 22 C 0.071 3.929 23 C -0.093 4.093 24 N -0.112 5.112 25 N -0.136 5.136 26 C -0.132 4.132 27 N -0.160 5.160 28 C -0.072 4.072 29 C -0.006 4.006 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.090 0.910 43 H 0.238 0.762 44 H 0.107 0.893 45 H 0.113 0.887 46 H 0.110 0.890 47 H 0.096 0.904 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.104 5.638 26.541 28.048 hybrid contribution 1.071 1.416 -1.329 2.218 sum 8.175 7.054 25.212 27.427 Atomic orbital electron populations 1.22500 0.99203 1.00700 1.00476 1.20124 0.91832 0.95125 0.85398 0.93282 1.42359 1.78164 1.10655 1.05113 1.19216 1.36402 0.93857 0.87310 0.91224 1.24717 1.02254 0.95950 0.97985 1.69652 1.50914 1.08631 1.28905 0.86221 0.77731 0.78619 0.83799 1.21801 1.21834 1.20818 1.22703 0.95153 1.00324 0.94042 0.89993 1.22590 0.96439 1.04273 0.92028 1.22249 0.86600 0.99653 0.94384 1.48490 1.16487 1.65748 1.04429 1.19694 0.88762 0.78854 0.81220 1.90750 1.27462 1.46689 1.74933 1.22229 0.96183 1.02416 0.82137 1.88078 1.38085 1.87860 1.13353 1.20494 0.89616 1.01924 0.80854 1.24252 1.03925 0.84599 0.96496 1.74286 1.11937 1.25046 0.99964 1.74311 1.19981 1.07003 1.12295 1.26522 0.98035 0.96851 0.91765 1.46190 1.42376 1.13345 1.14066 1.22183 0.99161 0.82356 1.03530 1.22325 0.92240 0.99375 0.86673 0.93532 0.94376 0.92525 0.78290 0.93547 0.90141 0.89311 0.91547 0.91380 0.89548 0.89951 0.88984 0.91020 0.76195 0.89326 0.88666 0.89036 0.90403 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 9.23 37.16 0.34 -2.59 16 2 C 0.19 3.36 2.40 -67.93 -0.16 3.20 16 3 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 4 N -0.72 -16.66 4.88 -53.42 -0.26 -16.92 16 5 C -0.24 -6.21 9.93 -15.06 -0.15 -6.36 16 6 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -27.02 13.06 55.49 0.72 -26.29 16 9 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C -0.10 -1.50 2.64 -88.41 -0.23 -1.74 16 14 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 15 C -0.12 -1.51 6.20 -24.83 -0.15 -1.66 16 16 C 0.09 0.94 6.49 -3.07 -0.02 0.92 16 17 N -0.62 -7.65 3.33 -170.52 -0.57 -8.22 16 18 C 0.53 7.09 7.93 -10.98 -0.09 7.00 16 19 O -0.52 -9.48 16.76 -14.35 -0.24 -9.72 16 20 C 0.05 0.45 5.61 36.01 0.20 0.65 16 21 O -0.36 -4.00 9.86 -55.14 -0.54 -4.54 16 22 C 0.15 1.14 6.29 36.01 0.23 1.37 16 23 C 0.17 1.79 7.66 -154.99 -1.19 0.60 16 24 N -0.27 -3.68 12.21 32.80 0.40 -3.28 16 25 N -0.30 -3.74 12.21 29.69 0.36 -3.38 16 26 C 0.16 1.24 12.74 -89.95 -1.15 0.09 16 27 N -0.47 -3.46 3.15 -122.69 -0.39 -3.84 16 28 C 0.07 0.19 11.04 59.85 0.66 0.85 16 29 C 0.12 1.60 5.52 -2.53 -0.01 1.58 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.04 0.56 7.60 -51.93 -0.39 0.17 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.38 9.45 7.80 -40.82 -0.32 9.13 16 34 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.08 1.11 8.04 -51.93 -0.42 0.69 16 36 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.28 7.21 -51.93 -0.37 -0.10 16 43 H 0.22 0.66 8.06 -52.48 -0.42 0.24 16 44 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 45 H 0.09 0.00 8.14 -51.93 -0.42 -0.43 16 46 H 0.09 0.11 7.19 -51.93 -0.37 -0.26 16 47 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 48 H 0.07 0.95 8.03 -51.93 -0.42 0.53 16 LS Contribution 401.24 15.07 6.05 6.05 Total: -1.00 -37.83 401.24 -9.06 -46.89 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.75 Total: 3.13 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -1.82 Total: 3.46 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: 0.27 Total: -61.94 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.78 Total: -14.26 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.83 -9.06 -46.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754803136.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.213 kcal (2) G-P(sol) polarization free energy of solvation -37.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds