Wall clock time and date at job start Tue Mar 31 2020 19:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46622 * 2 1 4 4 N 1.46495 * 109.47129 * 239.99887 * 2 1 3 5 5 C 1.36942 * 119.99892 * 85.00073 * 4 2 1 6 6 H 1.07998 * 120.00123 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00065 * 179.97438 * 5 4 2 8 8 N 1.31622 * 120.00064 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00182 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47035 * 90.00036 * 9 7 5 11 11 H 1.48497 * 109.47161 * 210.00254 * 9 7 5 12 12 H 1.48501 * 109.47098 * 329.99765 * 9 7 5 13 13 C 1.52999 * 109.47044 * 119.99854 * 2 1 3 14 14 H 1.09005 * 110.91304 * 59.90963 * 13 2 1 15 15 C 1.55273 * 111.09886 * 183.82280 * 13 2 1 16 16 C 1.54331 * 103.00311 * 153.44892 * 15 13 2 17 17 N 1.47012 * 107.27486 * 337.88522 * 16 15 13 18 18 C 1.34776 * 125.65297 * 178.96514 * 17 16 15 19 19 O 1.21277 * 120.00518 * 179.97438 * 18 17 16 20 20 C 1.50705 * 119.99690 * 359.97026 * 18 17 16 21 21 O 1.42896 * 109.47448 * 180.02562 * 20 18 17 22 22 C 1.42897 * 114.00330 * 180.02562 * 21 20 18 23 23 C 1.50700 * 109.47273 * 180.02562 * 22 21 20 24 24 N 1.30516 * 126.35026 * 90.01860 * 23 22 21 25 25 N 1.28598 * 109.67579 * 179.97438 * 24 23 22 26 26 C 1.30521 * 109.66974 * 0.02562 * 25 24 23 27 27 N 1.35491 * 107.30830 * 359.77240 * 26 25 24 28 28 C 1.46504 * 126.98043 * 180.22355 * 27 26 25 29 29 C 1.47426 * 108.70231 * 358.94133 * 17 16 15 30 30 H 1.09002 * 109.47195 * 185.07978 * 1 2 3 31 31 H 1.08995 * 109.47201 * 305.08424 * 1 2 3 32 32 H 1.09001 * 109.47040 * 65.08768 * 1 2 3 33 33 H 0.96993 * 120.00114 * 264.99419 * 4 2 1 34 34 H 0.96993 * 120.00184 * 180.02562 * 8 7 5 35 35 H 1.08994 * 110.62588 * 35.09552 * 15 13 2 36 36 H 1.08998 * 110.75727 * 271.86260 * 15 13 2 37 37 H 1.09004 * 109.87631 * 218.46368 * 16 15 13 38 38 H 1.08999 * 110.00825 * 97.37821 * 16 15 13 39 39 H 1.09002 * 109.47199 * 300.00843 * 20 18 17 40 40 H 1.08999 * 109.46846 * 60.00109 * 20 18 17 41 41 H 1.09002 * 109.47033 * 300.00139 * 22 21 20 42 42 H 1.09000 * 109.47231 * 60.00063 * 22 21 20 43 43 H 1.08003 * 126.34098 * 179.97438 * 26 25 24 44 44 H 1.08997 * 109.46910 * 270.15660 * 28 27 26 45 45 H 1.08995 * 109.47219 * 30.15619 * 28 27 26 46 46 H 1.08999 * 109.46872 * 150.15548 * 28 27 26 47 47 H 1.09002 * 110.36557 * 142.97124 * 29 17 16 48 48 H 1.09004 * 110.36608 * 265.17992 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3757 6 1 1.8919 1.0403 -2.4244 7 6 2.6124 -0.6617 -3.5090 8 7 2.9264 -1.9385 -3.4497 9 14 2.7915 0.2703 -5.1179 10 1 4.1538 0.8554 -5.2020 11 1 2.5815 -0.6609 -6.2554 12 1 1.7814 1.3574 -5.1753 13 6 2.0400 -0.7212 1.2493 14 1 1.6884 -1.7527 1.2738 15 6 3.5891 -0.6602 1.3367 16 6 3.8561 -0.7732 2.8525 17 7 2.6287 -0.3535 3.5445 18 6 2.4490 -0.3291 4.8800 19 8 1.3897 0.0377 5.3428 20 6 3.5645 -0.7577 5.7983 21 8 3.1338 -0.6444 7.1561 22 6 4.1227 -1.0282 8.1135 23 6 3.5636 -0.8705 9.5040 24 7 2.9224 -1.7787 10.1876 25 7 2.5902 -1.3027 11.3351 26 6 3.0039 -0.0689 11.4354 27 7 3.6376 0.2391 10.2782 28 6 4.2717 1.5139 9.9329 29 6 1.6272 0.0369 2.5355 30 1 -0.3634 -1.0236 0.0910 31 1 -0.3633 0.5906 0.8409 32 1 -0.3633 0.4329 -0.9321 33 1 2.2491 -1.6317 -1.1525 34 1 3.2504 -2.3956 -4.2414 35 1 3.9584 0.2896 0.9499 36 1 4.0394 -1.4967 0.8024 37 1 4.6820 -0.1195 3.1331 38 1 4.0945 -1.8043 3.1133 39 1 3.8312 -1.7933 5.5872 40 1 4.4330 -0.1190 5.6377 41 1 4.4017 -2.0692 7.9504 42 1 5.0024 -0.3944 8.0012 43 1 2.8691 0.5842 12.2850 44 1 3.5411 2.1648 9.4529 45 1 4.6440 1.9917 10.8391 46 1 5.1018 1.3335 9.2499 47 1 0.6302 -0.2688 2.8527 48 1 1.6576 1.1135 2.3676 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754803136.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:58 Heat of formation + Delta-G solvation = -1.822878 kcal Electronic energy + Delta-G solvation = -28532.037110 eV Core-core repulsion = 24430.485603 eV Total energy + Delta-G solvation = -4101.551507 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.14785 -41.22387 -39.44386 -38.42937 -36.76668 -36.02277 -34.26601 -32.78359 -32.03188 -30.81021 -29.80773 -28.69095 -28.30755 -27.14249 -26.05311 -24.25271 -23.41691 -22.77980 -22.04164 -21.08404 -20.42899 -19.14653 -18.59247 -18.08406 -17.88188 -17.58570 -17.20201 -16.85185 -16.47249 -16.39543 -15.92697 -15.69232 -15.33352 -15.18255 -14.80181 -14.62311 -14.30548 -14.05139 -13.96307 -13.87015 -13.56891 -13.45349 -13.25160 -13.10979 -12.97405 -12.88001 -12.75280 -12.59316 -12.29994 -12.16490 -11.96032 -11.63257 -11.53742 -11.45428 -11.36782 -11.15847 -10.97343 -10.88873 -10.86232 -10.45156 -9.69760 -8.95693 -7.89421 -5.16173 0.61119 1.48119 1.50097 1.51093 1.52350 1.58782 1.65195 1.87148 2.59393 2.80659 3.29051 3.44139 3.51775 3.66696 3.70365 3.75534 3.85036 3.87568 3.93594 4.14041 4.20974 4.23738 4.27273 4.35926 4.40214 4.41877 4.53717 4.57963 4.62094 4.69752 4.70456 4.80083 4.87491 4.90946 4.99982 5.07253 5.08551 5.14788 5.24563 5.35763 5.40366 5.56852 5.61787 5.83142 5.92092 6.32837 6.47508 7.08050 7.40053 7.64062 8.16037 8.39796 9.33733 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033452 B = 0.001710 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.828471 B =16374.674300 C =16535.001472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.183 3.817 3 H 0.049 0.951 4 N -0.729 5.729 5 C -0.231 4.231 6 H 0.073 0.927 7 C -0.073 4.073 8 N -0.967 5.967 9 Si 0.965 3.035 10 H -0.287 1.287 11 H -0.300 1.300 12 H -0.274 1.274 13 C -0.095 4.095 14 H 0.074 0.926 15 C -0.114 4.114 16 C 0.100 3.900 17 N -0.614 5.614 18 C 0.521 3.479 19 O -0.582 6.582 20 C 0.056 3.944 21 O -0.395 6.395 22 C 0.149 3.851 23 C 0.164 3.836 24 N -0.327 5.327 25 N -0.353 5.353 26 C 0.168 3.832 27 N -0.465 5.465 28 C 0.062 3.938 29 C 0.121 3.879 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.374 0.626 34 H 0.249 0.751 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.126 0.874 41 H 0.100 0.900 42 H 0.116 0.884 43 H 0.265 0.735 44 H 0.086 0.914 45 H 0.126 0.874 46 H 0.110 0.890 47 H 0.064 0.936 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.744 8.364 27.136 30.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.074 3.926 3 H 0.067 0.933 4 N -0.369 5.369 5 C -0.363 4.363 6 H 0.091 0.909 7 C -0.266 4.266 8 N -0.618 5.618 9 Si 0.795 3.205 10 H -0.214 1.214 11 H -0.227 1.227 12 H -0.199 1.199 13 C -0.115 4.115 14 H 0.092 0.908 15 C -0.152 4.152 16 C -0.021 4.021 17 N -0.348 5.348 18 C 0.310 3.690 19 O -0.462 6.462 20 C -0.023 4.023 21 O -0.313 6.313 22 C 0.071 3.929 23 C -0.105 4.105 24 N -0.169 5.169 25 N -0.192 5.192 26 C -0.121 4.121 27 N -0.156 5.156 28 C -0.079 4.079 29 C -0.002 4.002 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.206 0.794 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.130 0.870 40 H 0.144 0.856 41 H 0.118 0.882 42 H 0.134 0.866 43 H 0.281 0.719 44 H 0.104 0.896 45 H 0.144 0.856 46 H 0.128 0.872 47 H 0.082 0.918 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.377 7.506 27.745 30.233 hybrid contribution 0.332 0.943 -1.638 1.919 sum 9.709 8.449 26.108 29.108 Atomic orbital electron populations 1.22385 0.98525 1.00735 1.00491 1.20291 0.92126 0.95020 0.85171 0.93320 1.42496 1.78268 1.10278 1.05886 1.19556 1.34369 0.94059 0.88335 0.90887 1.25421 1.03362 0.96789 1.01008 1.69794 1.52789 1.10010 1.29215 0.85262 0.77806 0.77416 0.80017 1.21403 1.22721 1.19910 1.22473 0.96715 0.99423 0.92850 0.90757 1.22523 0.94605 1.03414 0.94610 1.22363 0.86261 1.02018 0.91482 1.48536 1.16793 1.65202 1.04303 1.20603 0.89205 0.77636 0.81541 1.90723 1.30092 1.49465 1.75878 1.22344 0.94939 1.04631 0.80357 1.88016 1.40297 1.88351 1.14593 1.20781 0.89811 1.03501 0.78764 1.24765 1.03215 0.84992 0.97526 1.74145 1.14166 1.27484 1.01104 1.74167 1.22478 1.09641 1.12925 1.27335 0.95952 0.95979 0.92794 1.46478 1.41779 1.14033 1.13266 1.22575 0.99371 0.80311 1.05629 1.22125 0.92264 0.99269 0.86557 0.93991 0.91768 0.94522 0.79447 0.94240 0.90889 0.90383 0.88041 0.88988 0.87004 0.85630 0.88194 0.86617 0.71949 0.89581 0.85600 0.87158 0.91788 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.57 9.23 71.98 0.66 -4.91 16 2 C 0.18 6.55 2.40 44.99 0.11 6.66 16 3 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 4 N -0.73 -33.86 4.88 -322.94 -1.58 -35.44 16 5 C -0.23 -12.13 9.93 84.03 0.83 -11.29 16 6 H 0.07 3.72 7.83 -2.91 -0.02 3.69 16 7 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 8 N -0.97 -56.83 13.06 21.65 0.28 -56.55 16 9 Si 0.96 44.76 29.55 68.60 2.03 46.79 16 10 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 13 C -0.09 -2.72 2.64 -9.36 -0.02 -2.74 16 14 H 0.07 2.26 8.14 -2.38 -0.02 2.25 16 15 C -0.11 -2.77 6.20 31.83 0.20 -2.57 16 16 C 0.10 1.63 6.49 86.73 0.56 2.20 16 17 N -0.61 -13.82 3.33 -811.79 -2.70 -16.52 16 18 C 0.52 12.98 7.93 87.66 0.69 13.67 16 19 O -0.58 -21.06 16.76 16.02 0.27 -20.79 16 20 C 0.06 0.80 5.61 71.24 0.40 1.20 16 21 O -0.39 -7.98 9.86 -129.94 -1.28 -9.26 16 22 C 0.15 1.87 6.29 71.24 0.45 2.32 16 23 C 0.16 3.19 7.66 137.98 1.06 4.25 16 24 N -0.33 -9.13 12.21 -50.15 -0.61 -9.75 16 25 N -0.35 -9.09 12.21 -59.99 -0.73 -9.82 16 26 C 0.17 2.46 12.74 180.11 2.30 4.75 16 27 N -0.47 -5.93 3.15 -542.07 -1.71 -7.64 16 28 C 0.06 0.11 11.04 127.77 1.41 1.53 16 29 C 0.12 3.20 5.52 86.85 0.48 3.68 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 1.86 7.60 -2.39 -0.02 1.84 16 32 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.37 18.72 7.80 -92.71 -0.72 17.99 16 34 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 35 H 0.07 1.89 8.04 -2.39 -0.02 1.87 16 36 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.12 0.36 7.21 -2.39 -0.02 0.34 16 43 H 0.26 0.88 8.06 -2.91 -0.02 0.85 16 44 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 45 H 0.13 -0.54 8.14 -2.39 -0.02 -0.55 16 46 H 0.11 -0.20 7.19 -2.39 -0.02 -0.22 16 47 H 0.06 1.88 8.04 -2.39 -0.02 1.86 16 48 H 0.07 1.89 8.03 -2.39 -0.02 1.87 16 Total: -1.00 -87.81 401.24 3.80 -84.01 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.24 Total: 19.80 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 9.59 Total: 15.17 kcal Atomic # 7 Polarization: -128.67 SS G_CDS: -7.05 Total: -135.71 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -1.01 Total: -30.05 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -87.81 3.80 -84.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754803136.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.189 kcal (2) G-P(sol) polarization free energy of solvation -87.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds