Wall clock time and date at job start Tue Mar 31 2020 19:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47365 * 2 1 4 4 N 1.46496 * 109.46850 * 120.00335 * 2 1 3 5 5 C 1.36939 * 120.00317 * 274.99822 * 4 2 1 6 6 H 1.08006 * 119.99530 * 359.97438 * 5 4 2 7 7 C 1.38810 * 120.00447 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99946 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99999 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47252 * 60.00124 * 9 7 5 11 11 H 1.48499 * 109.46873 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47192 * 299.99614 * 9 7 5 13 13 C 1.52999 * 109.47161 * 240.00131 * 2 1 3 14 14 H 1.09002 * 110.88836 * 299.20706 * 13 2 1 15 15 C 1.55158 * 111.00697 * 175.28005 * 13 2 1 16 16 C 1.54306 * 102.86621 * 206.23227 * 15 13 2 17 17 N 1.47021 * 107.27778 * 22.52497 * 16 15 13 18 18 C 1.34777 * 125.64840 * 180.96873 * 17 16 15 19 19 O 1.21285 * 119.99865 * 179.69091 * 18 17 16 20 20 C 1.50693 * 120.00027 * 359.69496 * 18 17 16 21 21 O 1.42898 * 109.47171 * 179.97438 * 20 18 17 22 22 C 1.42907 * 114.00333 * 179.97438 * 21 20 18 23 23 C 1.50700 * 109.47039 * 180.02562 * 22 21 20 24 24 N 1.30526 * 126.34331 * 90.02801 * 23 22 21 25 25 N 1.28594 * 109.66990 * 179.97438 * 24 23 22 26 26 C 1.30520 * 109.67350 * 359.97438 * 25 24 23 27 27 N 1.35488 * 126.34671 * 269.97683 * 23 22 21 28 28 C 1.46503 * 126.98161 * 0.04630 * 27 23 22 29 29 C 1.47423 * 108.70205 * 0.70631 * 17 16 15 30 30 H 1.08991 * 109.47070 * 174.77008 * 1 2 3 31 31 H 1.08998 * 109.47308 * 294.77840 * 1 2 3 32 32 H 1.09006 * 109.46783 * 54.77385 * 1 2 3 33 33 H 0.97002 * 119.99838 * 94.99830 * 4 2 1 34 34 H 0.96998 * 120.00334 * 180.02562 * 8 7 5 35 35 H 1.09001 * 110.71657 * 324.79092 * 15 13 2 36 36 H 1.09003 * 110.71999 * 88.05634 * 15 13 2 37 37 H 1.09008 * 109.98348 * 263.04993 * 16 15 13 38 38 H 1.08999 * 109.77638 * 141.88541 * 16 15 13 39 39 H 1.09005 * 109.47355 * 60.00136 * 20 18 17 40 40 H 1.08997 * 109.47618 * 299.99824 * 20 18 17 41 41 H 1.08997 * 109.46782 * 59.99879 * 22 21 20 42 42 H 1.09003 * 109.46919 * 300.00208 * 22 21 20 43 43 H 1.08004 * 126.34474 * 180.02562 * 26 25 24 44 44 H 1.09002 * 109.46523 * 269.97255 * 28 27 23 45 45 H 1.08996 * 109.46968 * 29.96916 * 28 27 23 46 46 H 1.08996 * 109.47192 * 149.97431 * 28 27 23 47 47 H 1.08997 * 110.36616 * 94.93805 * 29 17 16 48 48 H 1.09008 * 110.36781 * 217.15341 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1491 -0.0077 2.3758 6 1 1.8927 1.0404 2.4242 7 6 2.6122 -0.6619 3.5090 8 7 2.9252 -1.9390 3.4499 9 14 2.7900 0.2697 5.1183 10 1 1.4673 0.8054 5.5288 11 1 3.2990 -0.6488 6.1683 12 1 3.7445 1.3928 4.9373 13 6 2.0400 -0.7212 -1.2492 14 1 1.7011 -1.7571 -1.2656 15 6 3.5864 -0.6396 -1.3463 16 6 3.8427 -0.7654 -2.8627 17 7 2.6074 -0.3605 -3.5494 18 6 2.4180 -0.3490 -4.8837 19 8 1.3507 0.0004 -5.3417 20 6 3.5324 -0.7702 -5.8065 21 8 3.0906 -0.6732 -7.1621 22 6 4.0778 -1.0516 -8.1236 23 6 3.5071 -0.9109 -9.5113 24 7 3.5567 0.1546 -10.2637 25 7 2.9705 -0.0791 -11.3841 26 6 2.5210 -1.3044 -11.3977 27 7 2.8485 -1.8671 -10.2095 28 6 2.5508 -3.2323 -9.7691 29 6 1.6080 0.0248 -2.5364 30 1 -0.3633 -1.0233 -0.0937 31 1 -0.3634 0.4307 0.9330 32 1 -0.3633 0.5928 -0.8395 33 1 2.2489 -1.6319 1.1525 34 1 3.2485 -2.3964 4.2418 35 1 3.9465 0.3174 -0.9687 36 1 4.0507 -1.4666 -0.8090 37 1 4.0858 -1.7976 -3.1151 38 1 4.6615 -0.1075 -3.1542 39 1 3.8140 -1.8006 -5.5895 40 1 4.3936 -0.1191 -5.6572 41 1 4.3714 -2.0875 -7.9544 42 1 4.9499 -0.4056 -8.0225 43 1 1.9868 -1.7813 -12.2063 44 1 3.3676 -3.8936 -10.0586 45 1 2.4376 -3.2478 -8.6852 46 1 1.6261 -3.5712 -10.2360 47 1 1.6275 1.1025 -2.3749 48 1 0.6123 -0.2938 -2.8453 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754803137.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:01 Heat of formation + Delta-G solvation = 23.090113 kcal Electronic energy + Delta-G solvation = -28541.644254 eV Core-core repulsion = 24441.173055 eV Total energy + Delta-G solvation = -4100.471199 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.51231 -40.22493 -38.54291 -37.42208 -35.48634 -35.25714 -32.56967 -32.06962 -30.73092 -29.54444 -28.71743 -28.16257 -27.37054 -26.39758 -24.36910 -22.99395 -22.80993 -21.50826 -21.44189 -19.69682 -19.50077 -17.94295 -17.47095 -17.30494 -16.98756 -16.81665 -16.40598 -15.93438 -15.59708 -15.45102 -14.78631 -14.59225 -14.14513 -13.94867 -13.83789 -13.53469 -13.43271 -13.26253 -12.87072 -12.75427 -12.64222 -12.35972 -12.29741 -12.12064 -11.88661 -11.77353 -11.26289 -10.90873 -10.79446 -10.76006 -10.64475 -10.63156 -10.44502 -10.29850 -10.26576 -10.00000 -9.88364 -9.70770 -9.65995 -8.94933 -8.69693 -7.00802 -5.81044 -3.09481 1.20475 1.97961 2.32787 2.47967 2.68551 3.40948 3.44307 3.46221 3.46467 3.96241 4.04260 4.15820 4.32211 4.36677 4.47803 4.53659 4.62541 4.69453 4.72005 4.78214 4.80924 4.87549 5.06472 5.09483 5.24081 5.39167 5.41390 5.49739 5.61801 5.66910 5.83621 5.85224 5.92804 6.01075 6.10831 6.17319 6.31690 6.33246 6.38796 6.47724 6.53742 6.60748 6.83666 7.06550 7.41370 7.66282 8.05289 8.32205 8.37585 9.49089 10.05742 10.40795 11.41451 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033532 B = 0.001713 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.818656 B =16345.147240 C =16500.063854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.185 3.815 3 H 0.050 0.950 4 N -0.722 5.722 5 C -0.237 4.237 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.934 5.934 9 Si 0.906 3.094 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.286 1.286 13 C -0.102 4.102 14 H 0.081 0.919 15 C -0.116 4.116 16 C 0.094 3.906 17 N -0.616 5.616 18 C 0.528 3.472 19 O -0.523 6.523 20 C 0.050 3.950 21 O -0.357 6.357 22 C 0.150 3.850 23 C 0.175 3.825 24 N -0.270 5.270 25 N -0.296 5.296 26 C 0.156 3.844 27 N -0.468 5.468 28 C 0.069 3.931 29 C 0.116 3.884 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.037 0.963 33 H 0.383 0.617 34 H 0.255 0.745 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.222 0.778 44 H 0.085 0.915 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.071 0.929 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.999 -5.971 -25.485 26.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.368 4.368 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.737 3.263 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.213 1.213 13 C -0.122 4.122 14 H 0.099 0.901 15 C -0.154 4.154 16 C -0.029 4.029 17 N -0.352 5.352 18 C 0.315 3.685 19 O -0.398 6.398 20 C -0.030 4.030 21 O -0.274 6.274 22 C 0.071 3.929 23 C -0.093 4.093 24 N -0.113 5.113 25 N -0.136 5.136 26 C -0.131 4.131 27 N -0.160 5.160 28 C -0.074 4.074 29 C -0.006 4.006 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.110 0.890 43 H 0.238 0.762 44 H 0.103 0.897 45 H 0.114 0.886 46 H 0.115 0.885 47 H 0.089 0.911 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.545 -4.224 -26.166 26.741 hybrid contribution 0.048 -1.458 1.419 2.035 sum 3.594 -5.681 -24.747 25.644 Atomic orbital electron populations 1.22500 0.99225 1.00627 1.00519 1.20132 0.91824 0.95186 0.85393 0.93223 1.42350 1.78192 1.10624 1.05105 1.19178 1.36475 0.93851 0.87317 0.91258 1.24712 1.02213 0.95960 0.97987 1.69642 1.50951 1.08625 1.28977 0.86293 0.77789 0.78599 0.83653 1.21326 1.21759 1.21305 1.22680 0.95136 1.00310 0.94064 0.90058 1.22578 0.96465 1.04285 0.92039 1.22248 0.86502 0.99679 0.94464 1.48495 1.16073 1.66117 1.04479 1.19695 0.88827 0.78790 0.81232 1.90753 1.26986 1.46974 1.75130 1.22229 0.96431 1.02169 0.82141 1.88079 1.37404 1.88582 1.13377 1.20503 0.90813 1.00842 0.80772 1.24258 1.01126 0.86603 0.97270 1.74284 1.17186 1.20689 0.99111 1.74305 1.12403 1.12605 1.14315 1.26523 1.03619 0.92630 0.90377 1.46188 1.41776 1.13754 1.14237 1.22202 1.03394 0.78648 1.03145 1.22335 0.92196 0.99576 0.86512 0.93593 0.92513 0.94357 0.78323 0.93512 0.90056 0.89348 0.91469 0.91416 0.89908 0.89571 0.90934 0.88987 0.76197 0.89650 0.88648 0.88544 0.91102 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 9.22 37.16 0.34 -2.57 16 2 C 0.18 3.34 2.40 -67.93 -0.16 3.18 16 3 H 0.05 0.92 8.07 -51.93 -0.42 0.50 16 4 N -0.72 -16.61 4.90 -53.42 -0.26 -16.87 16 5 C -0.24 -6.22 9.93 -15.06 -0.15 -6.37 16 6 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -26.95 13.06 55.49 0.72 -26.22 16 9 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 13 C -0.10 -1.48 2.63 -88.47 -0.23 -1.72 16 14 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 15 C -0.12 -1.50 6.21 -24.91 -0.15 -1.66 16 16 C 0.09 0.93 6.48 -3.07 -0.02 0.91 16 17 N -0.62 -7.63 3.33 -170.53 -0.57 -8.20 16 18 C 0.53 7.07 7.93 -10.99 -0.09 6.98 16 19 O -0.52 -9.46 16.75 -14.36 -0.24 -9.70 16 20 C 0.05 0.45 5.61 36.00 0.20 0.65 16 21 O -0.36 -3.98 9.86 -55.14 -0.54 -4.52 16 22 C 0.15 1.13 6.11 36.01 0.22 1.35 16 23 C 0.17 1.79 7.66 -154.99 -1.19 0.61 16 24 N -0.27 -3.68 12.21 32.80 0.40 -3.28 16 25 N -0.30 -3.74 12.21 29.69 0.36 -3.38 16 26 C 0.16 1.25 12.74 -89.95 -1.15 0.10 16 27 N -0.47 -3.49 3.15 -122.69 -0.39 -3.87 16 28 C 0.07 0.19 10.90 59.85 0.65 0.84 16 29 C 0.12 1.59 5.48 -2.53 -0.01 1.58 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.04 0.57 7.58 -51.93 -0.39 0.17 16 33 H 0.38 9.39 7.80 -40.82 -0.32 9.07 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.08 1.13 8.03 -51.93 -0.42 0.72 16 36 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.29 7.86 -51.93 -0.41 -0.12 16 42 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.22 0.67 8.06 -52.48 -0.42 0.25 16 44 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 45 H 0.09 0.29 7.81 -51.93 -0.41 -0.12 16 46 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16 47 H 0.07 0.98 8.04 -51.93 -0.42 0.56 16 48 H 0.08 1.13 8.03 -51.92 -0.42 0.71 16 LS Contribution 402.12 15.07 6.06 6.06 Total: -1.00 -37.66 402.12 -9.12 -46.79 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.82 Total: 3.07 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -1.83 Total: 3.44 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: 0.27 Total: -61.81 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.78 Total: -14.23 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -37.66 -9.12 -46.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754803137.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.880 kcal (2) G-P(sol) polarization free energy of solvation -37.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds