Wall clock time and date at job start Tue Mar 31 2020 19:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47365 * 2 1 4 4 N 1.46496 * 109.46850 * 120.00335 * 2 1 3 5 5 C 1.36939 * 120.00317 * 274.99822 * 4 2 1 6 6 H 1.08006 * 119.99530 * 359.97438 * 5 4 2 7 7 C 1.38810 * 120.00447 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99946 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99999 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47252 * 60.00124 * 9 7 5 11 11 H 1.48499 * 109.46873 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47192 * 299.99614 * 9 7 5 13 13 C 1.52999 * 109.47161 * 240.00131 * 2 1 3 14 14 H 1.09002 * 110.88836 * 299.20706 * 13 2 1 15 15 C 1.55158 * 111.00697 * 175.28005 * 13 2 1 16 16 C 1.54306 * 102.86621 * 206.23227 * 15 13 2 17 17 N 1.47021 * 107.27778 * 22.52497 * 16 15 13 18 18 C 1.34777 * 125.64840 * 180.96873 * 17 16 15 19 19 O 1.21285 * 119.99865 * 179.69091 * 18 17 16 20 20 C 1.50693 * 120.00027 * 359.69496 * 18 17 16 21 21 O 1.42898 * 109.47171 * 179.97438 * 20 18 17 22 22 C 1.42907 * 114.00333 * 179.97438 * 21 20 18 23 23 C 1.50700 * 109.47039 * 180.02562 * 22 21 20 24 24 N 1.30526 * 126.34331 * 90.02801 * 23 22 21 25 25 N 1.28594 * 109.66990 * 179.97438 * 24 23 22 26 26 C 1.30520 * 109.67350 * 359.97438 * 25 24 23 27 27 N 1.35488 * 126.34671 * 269.97683 * 23 22 21 28 28 C 1.46503 * 126.98161 * 0.04630 * 27 23 22 29 29 C 1.47423 * 108.70205 * 0.70631 * 17 16 15 30 30 H 1.08991 * 109.47070 * 174.77008 * 1 2 3 31 31 H 1.08998 * 109.47308 * 294.77840 * 1 2 3 32 32 H 1.09006 * 109.46783 * 54.77385 * 1 2 3 33 33 H 0.97002 * 119.99838 * 94.99830 * 4 2 1 34 34 H 0.96998 * 120.00334 * 180.02562 * 8 7 5 35 35 H 1.09001 * 110.71657 * 324.79092 * 15 13 2 36 36 H 1.09003 * 110.71999 * 88.05634 * 15 13 2 37 37 H 1.09008 * 109.98348 * 263.04993 * 16 15 13 38 38 H 1.08999 * 109.77638 * 141.88541 * 16 15 13 39 39 H 1.09005 * 109.47355 * 60.00136 * 20 18 17 40 40 H 1.08997 * 109.47618 * 299.99824 * 20 18 17 41 41 H 1.08997 * 109.46782 * 59.99879 * 22 21 20 42 42 H 1.09003 * 109.46919 * 300.00208 * 22 21 20 43 43 H 1.08004 * 126.34474 * 180.02562 * 26 25 24 44 44 H 1.09002 * 109.46523 * 269.97255 * 28 27 23 45 45 H 1.08996 * 109.46968 * 29.96916 * 28 27 23 46 46 H 1.08996 * 109.47192 * 149.97431 * 28 27 23 47 47 H 1.08997 * 110.36616 * 94.93805 * 29 17 16 48 48 H 1.09008 * 110.36781 * 217.15341 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1491 -0.0077 2.3758 6 1 1.8927 1.0404 2.4242 7 6 2.6122 -0.6619 3.5090 8 7 2.9252 -1.9390 3.4499 9 14 2.7900 0.2697 5.1183 10 1 1.4673 0.8054 5.5288 11 1 3.2990 -0.6488 6.1683 12 1 3.7445 1.3928 4.9373 13 6 2.0400 -0.7212 -1.2492 14 1 1.7011 -1.7571 -1.2656 15 6 3.5864 -0.6396 -1.3463 16 6 3.8427 -0.7654 -2.8627 17 7 2.6074 -0.3605 -3.5494 18 6 2.4180 -0.3490 -4.8837 19 8 1.3507 0.0004 -5.3417 20 6 3.5324 -0.7702 -5.8065 21 8 3.0906 -0.6732 -7.1621 22 6 4.0778 -1.0516 -8.1236 23 6 3.5071 -0.9109 -9.5113 24 7 3.5567 0.1546 -10.2637 25 7 2.9705 -0.0791 -11.3841 26 6 2.5210 -1.3044 -11.3977 27 7 2.8485 -1.8671 -10.2095 28 6 2.5508 -3.2323 -9.7691 29 6 1.6080 0.0248 -2.5364 30 1 -0.3633 -1.0233 -0.0937 31 1 -0.3634 0.4307 0.9330 32 1 -0.3633 0.5928 -0.8395 33 1 2.2489 -1.6319 1.1525 34 1 3.2485 -2.3964 4.2418 35 1 3.9465 0.3174 -0.9687 36 1 4.0507 -1.4666 -0.8090 37 1 4.0858 -1.7976 -3.1151 38 1 4.6615 -0.1075 -3.1542 39 1 3.8140 -1.8006 -5.5895 40 1 4.3936 -0.1191 -5.6572 41 1 4.3714 -2.0875 -7.9544 42 1 4.9499 -0.4056 -8.0225 43 1 1.9868 -1.7813 -12.2063 44 1 3.3676 -3.8936 -10.0586 45 1 2.4376 -3.2478 -8.6852 46 1 1.6261 -3.5712 -10.2360 47 1 1.6275 1.1025 -2.3749 48 1 0.6123 -0.2938 -2.8453 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754803137.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:00 Heat of formation + Delta-G solvation = -1.794668 kcal Electronic energy + Delta-G solvation = -28542.723339 eV Core-core repulsion = 24441.173055 eV Total energy + Delta-G solvation = -4101.550284 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.14800 -41.22768 -39.44947 -38.43061 -36.76654 -36.02008 -34.26632 -32.78197 -32.03470 -30.81230 -29.80660 -28.69287 -28.30229 -27.13223 -26.05322 -24.25634 -23.41646 -22.77332 -22.04943 -21.08598 -20.42646 -19.14626 -18.59674 -18.08364 -17.83693 -17.61006 -17.23058 -16.84226 -16.45271 -16.36844 -16.04189 -15.60582 -15.27147 -15.23385 -14.81951 -14.62579 -14.28177 -14.06584 -13.90683 -13.85589 -13.64630 -13.42365 -13.25912 -13.12223 -12.99389 -12.86585 -12.74504 -12.59727 -12.29764 -12.21205 -11.95203 -11.63422 -11.53676 -11.45775 -11.37017 -11.14691 -10.97243 -10.88316 -10.86564 -10.44913 -9.69859 -8.95504 -7.89476 -5.15988 0.60879 1.48357 1.50495 1.51636 1.52199 1.57490 1.65119 1.87029 2.59448 2.80423 3.29174 3.43927 3.51902 3.65038 3.70176 3.75067 3.85512 3.87894 3.96772 4.14434 4.21006 4.24611 4.27886 4.36618 4.39563 4.41616 4.53045 4.58271 4.62353 4.69238 4.70557 4.80271 4.85857 4.90906 5.00046 5.07570 5.08739 5.14784 5.24330 5.35524 5.40660 5.56556 5.61900 5.82861 5.91709 6.32891 6.47476 7.08003 7.40253 7.63911 8.16064 8.40197 9.33383 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033532 B = 0.001713 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.818656 B =16345.147240 C =16500.063854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.181 3.819 3 H 0.046 0.954 4 N -0.728 5.728 5 C -0.233 4.233 6 H 0.071 0.929 7 C -0.072 4.072 8 N -0.966 5.966 9 Si 0.964 3.036 10 H -0.284 1.284 11 H -0.298 1.298 12 H -0.279 1.279 13 C -0.093 4.093 14 H 0.078 0.922 15 C -0.115 4.115 16 C 0.100 3.900 17 N -0.614 5.614 18 C 0.521 3.479 19 O -0.582 6.582 20 C 0.056 3.944 21 O -0.395 6.395 22 C 0.150 3.850 23 C 0.164 3.836 24 N -0.326 5.326 25 N -0.352 5.352 26 C 0.168 3.832 27 N -0.465 5.465 28 C 0.061 3.939 29 C 0.120 3.880 30 H 0.043 0.957 31 H 0.035 0.965 32 H 0.063 0.937 33 H 0.374 0.626 34 H 0.249 0.751 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.124 0.876 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.101 0.899 43 H 0.265 0.735 44 H 0.111 0.889 45 H 0.095 0.905 46 H 0.116 0.884 47 H 0.068 0.932 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.110 -7.260 -26.599 28.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.073 3.927 3 H 0.064 0.936 4 N -0.369 5.369 5 C -0.365 4.365 6 H 0.089 0.911 7 C -0.264 4.264 8 N -0.617 5.617 9 Si 0.794 3.206 10 H -0.211 1.211 11 H -0.224 1.224 12 H -0.205 1.205 13 C -0.112 4.112 14 H 0.097 0.903 15 C -0.152 4.152 16 C -0.021 4.021 17 N -0.348 5.348 18 C 0.310 3.690 19 O -0.462 6.462 20 C -0.023 4.023 21 O -0.313 6.313 22 C 0.071 3.929 23 C -0.105 4.105 24 N -0.168 5.168 25 N -0.192 5.192 26 C -0.120 4.120 27 N -0.156 5.156 28 C -0.080 4.080 29 C -0.003 4.003 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.206 0.794 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.142 0.858 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.119 0.881 43 H 0.280 0.720 44 H 0.129 0.871 45 H 0.113 0.887 46 H 0.134 0.866 47 H 0.086 0.914 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.671 -5.503 -27.292 28.230 hybrid contribution -0.374 -1.073 1.710 2.053 sum 4.297 -6.576 -25.582 26.761 Atomic orbital electron populations 1.22379 0.98449 1.00825 1.00436 1.20297 0.92197 0.94948 0.85282 0.93642 1.42470 1.78308 1.10271 1.05808 1.19510 1.34548 0.94031 0.88408 0.91057 1.25400 1.03293 0.96807 1.00934 1.69779 1.52742 1.09917 1.29258 0.85351 0.77708 0.77436 0.80097 1.21056 1.22413 1.20513 1.22444 0.96551 0.99589 0.92661 0.90327 1.22513 0.94774 1.03336 0.94628 1.22364 0.85951 1.02246 0.91566 1.48541 1.16384 1.65569 1.04348 1.20601 0.89260 0.77565 0.81559 1.90726 1.29642 1.49718 1.76068 1.22343 0.94627 1.04944 0.80363 1.88017 1.39309 1.89338 1.14607 1.20781 0.89899 1.03444 0.78730 1.24768 1.00984 0.86572 0.98168 1.74143 1.19268 1.23123 1.00281 1.74163 1.14616 1.15383 1.15024 1.27328 1.01915 0.91520 0.91284 1.46476 1.40605 1.14875 1.13616 1.22574 1.05468 0.76544 1.03376 1.22132 0.92390 0.99212 0.86538 0.93747 0.94613 0.91847 0.79365 0.94203 0.91199 0.90156 0.88430 0.88570 0.85837 0.86798 0.86755 0.88089 0.71974 0.87091 0.88668 0.86551 0.91374 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.52 9.22 71.98 0.66 -4.85 16 2 C 0.18 6.51 2.40 44.99 0.11 6.62 16 3 H 0.05 1.68 8.07 -2.39 -0.02 1.66 16 4 N -0.73 -33.69 4.90 -322.94 -1.58 -35.27 16 5 C -0.23 -12.24 9.93 84.03 0.83 -11.41 16 6 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 7 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 8 N -0.97 -56.40 13.06 21.65 0.28 -56.12 16 9 Si 0.96 44.79 29.55 68.60 2.03 46.82 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 11 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 C -0.09 -2.61 2.63 -9.40 -0.02 -2.64 16 14 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 15 C -0.11 -2.78 6.21 31.78 0.20 -2.58 16 16 C 0.10 1.63 6.48 86.72 0.56 2.19 16 17 N -0.61 -13.80 3.33 -811.82 -2.70 -16.50 16 18 C 0.52 12.95 7.93 87.65 0.69 13.64 16 19 O -0.58 -21.01 16.75 15.99 0.27 -20.74 16 20 C 0.06 0.79 5.61 71.23 0.40 1.19 16 21 O -0.39 -7.95 9.86 -129.94 -1.28 -9.23 16 22 C 0.15 1.88 6.11 71.24 0.44 2.32 16 23 C 0.16 3.20 7.66 137.98 1.06 4.26 16 24 N -0.33 -9.05 12.21 -50.16 -0.61 -9.67 16 25 N -0.35 -9.04 12.21 -59.99 -0.73 -9.78 16 26 C 0.17 2.47 12.74 180.11 2.30 4.76 16 27 N -0.47 -6.01 3.15 -542.07 -1.71 -7.72 16 28 C 0.06 0.14 10.90 127.77 1.39 1.53 16 29 C 0.12 3.19 5.48 86.86 0.48 3.66 16 30 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.84 7.58 -2.38 -0.02 1.82 16 33 H 0.37 18.53 7.80 -92.71 -0.72 17.81 16 34 H 0.25 14.28 8.31 -92.71 -0.77 13.50 16 35 H 0.07 1.86 8.03 -2.39 -0.02 1.84 16 36 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.12 0.75 8.14 -2.38 -0.02 0.73 16 40 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.11 0.41 7.86 -2.39 -0.02 0.40 16 42 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.26 0.91 8.06 -2.91 -0.02 0.88 16 44 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 45 H 0.09 0.27 7.81 -2.39 -0.02 0.26 16 46 H 0.12 -0.18 8.14 -2.39 -0.02 -0.20 16 47 H 0.07 1.84 8.04 -2.39 -0.02 1.82 16 48 H 0.07 1.92 8.03 -2.38 -0.02 1.90 16 Total: -1.00 -87.00 402.12 3.75 -83.25 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.23 Total: 19.75 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 9.56 Total: 15.20 kcal Atomic # 7 Polarization: -127.99 SS G_CDS: -7.05 Total: -135.05 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -1.01 Total: -29.97 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -87.00 3.75 -83.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754803137.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.453 kcal (2) G-P(sol) polarization free energy of solvation -87.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds