Wall clock time and date at job start Tue Mar 31 2020 19:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46860 * 2 1 4 4 N 1.46902 * 109.46934 * 120.00125 * 2 1 3 5 5 C 1.46900 * 110.99869 * 274.99975 * 4 2 1 6 6 C 1.50698 * 109.47435 * 180.02562 * 5 4 2 7 7 O 1.21293 * 119.99483 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00242 * 180.02562 * 6 5 4 9 9 C 1.37102 * 119.99558 * 180.02562 * 8 6 5 10 10 H 1.07998 * 120.00513 * 359.97438 * 9 8 6 11 11 C 1.38955 * 119.99446 * 179.97438 * 9 8 6 12 12 N 1.31411 * 120.00006 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99760 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47060 * 60.00025 * 13 11 9 15 15 H 1.48498 * 109.47083 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47502 * 300.00068 * 13 11 9 17 17 C 1.52998 * 109.47106 * 239.99802 * 2 1 3 18 18 H 1.08996 * 109.47361 * 300.00385 * 17 2 1 19 19 C 1.52999 * 109.47106 * 179.97438 * 17 2 1 20 20 N 1.46500 * 109.47109 * 60.00292 * 17 2 1 21 21 C 1.34781 * 120.00246 * 204.99921 * 20 17 2 22 22 O 1.21279 * 119.99642 * 359.97438 * 21 20 17 23 23 C 1.50697 * 120.00155 * 179.97438 * 21 20 17 24 24 C 1.53004 * 109.47197 * 180.02562 * 23 21 20 25 25 N 1.46494 * 109.47106 * 179.97438 * 24 23 21 26 26 C 1.34954 * 126.03475 * 124.99860 * 25 24 23 27 27 C 1.35316 * 107.74368 * 179.73518 * 26 25 24 28 28 C 1.39868 * 107.92272 * 0.02562 * 27 26 25 29 29 N 1.30837 * 108.20148 * 359.97438 * 28 27 26 30 30 H 1.09004 * 109.47618 * 300.00045 * 1 2 3 31 31 H 1.09006 * 109.47465 * 60.00250 * 1 2 3 32 32 H 1.09005 * 109.47414 * 179.97438 * 1 2 3 33 33 H 1.00904 * 111.00219 * 38.95025 * 4 2 1 34 34 H 1.09002 * 109.47368 * 300.00361 * 5 4 2 35 35 H 1.09000 * 109.47407 * 60.00000 * 5 4 2 36 36 H 0.96994 * 120.00138 * 359.97438 * 8 6 5 37 37 H 0.97000 * 119.99429 * 179.97438 * 12 11 9 38 38 H 1.09008 * 109.46949 * 300.00362 * 19 17 2 39 39 H 1.08998 * 109.46941 * 60.00267 * 19 17 2 40 40 H 1.08993 * 109.47135 * 180.02562 * 19 17 2 41 41 H 0.97003 * 120.00156 * 24.99798 * 20 17 2 42 42 H 1.09002 * 109.47181 * 59.99624 * 23 21 20 43 43 H 1.08998 * 109.47063 * 300.00199 * 23 21 20 44 44 H 1.08999 * 109.46666 * 59.99687 * 24 23 21 45 45 H 1.09007 * 109.46675 * 300.00058 * 24 23 21 46 46 H 1.07999 * 126.12426 * 359.75442 * 26 25 24 47 47 H 1.07999 * 126.03437 * 179.97438 * 27 26 25 48 48 H 1.08001 * 125.89990 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2225 2.3469 6 6 2.5884 -0.5215 3.5558 7 8 2.8695 -1.6982 3.4697 8 7 2.7285 0.1206 4.7324 9 6 3.1893 -0.5563 5.8320 10 1 3.4397 -1.6041 5.7555 11 6 3.3343 0.1059 7.0450 12 7 3.0301 1.3809 7.1381 13 14 3.9615 -0.8165 8.5434 14 1 5.3177 -1.3524 8.2629 15 1 4.0255 0.1087 9.7032 16 1 3.0405 -1.9389 8.8552 17 6 2.0400 -0.7213 -1.2492 18 1 1.6766 -1.7489 -1.2492 19 6 3.5700 -0.7207 -1.2495 20 7 1.5517 -0.0307 -2.4454 21 6 1.4230 -0.7030 -3.6064 22 8 1.7118 -1.8796 -3.6609 23 6 0.9201 0.0073 -4.8367 24 6 0.8682 -0.9760 -6.0079 25 7 0.3788 -0.2856 -7.2037 26 6 1.0044 -0.2263 -8.3980 27 6 0.2257 0.4967 -9.2359 28 6 -0.9144 0.8932 -8.5294 29 7 -0.8238 0.4246 -7.3112 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.4494 -1.4980 1.4101 34 1 2.7587 1.0462 2.1183 35 1 1.0870 0.6163 2.5525 36 1 2.5040 1.0617 4.8011 37 1 3.1310 1.8430 7.9849 38 1 3.9329 0.3072 -1.2497 39 1 3.9336 -1.2343 -0.3596 40 1 3.9333 -1.2342 -2.1397 41 1 1.3210 0.9105 -2.4019 42 1 1.5923 0.8296 -5.0817 43 1 -0.0791 0.3991 -4.6471 44 1 0.1957 -1.7980 -5.7625 45 1 1.8674 -1.3682 -6.1975 46 1 1.9558 -0.6756 -8.6414 47 1 0.4462 0.7274 -10.2677 48 1 -1.7289 1.4841 -8.9217 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755227492.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:46 Heat of formation + Delta-G solvation = 1.889434 kcal Electronic energy + Delta-G solvation = -27925.703936 eV Core-core repulsion = 23824.313407 eV Total energy + Delta-G solvation = -4101.390529 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.49906 -40.20960 -38.51019 -37.32672 -34.76428 -34.51659 -33.83412 -31.49192 -31.19473 -30.55402 -29.83005 -29.39471 -26.35800 -25.19088 -24.22477 -23.17063 -21.48895 -21.15017 -20.80356 -20.40028 -19.29605 -18.03552 -17.92660 -16.95668 -16.56934 -16.11135 -15.91657 -15.39713 -15.21964 -14.71136 -14.57057 -14.44963 -14.17051 -13.98057 -13.89100 -13.63175 -13.55777 -13.33566 -13.12411 -13.03182 -12.69587 -12.38875 -12.23461 -12.17907 -11.83898 -11.62629 -11.58080 -11.48320 -11.32321 -11.03010 -11.00921 -10.73797 -10.45426 -10.23336 -10.18676 -9.80763 -9.51655 -9.32909 -8.98219 -8.49585 -8.09833 -7.97834 -6.43441 -3.84296 1.51808 2.04791 2.32737 2.49162 2.89438 3.19176 3.25002 3.29543 3.88604 4.04755 4.10609 4.25231 4.33319 4.41913 4.50945 4.60875 4.71086 4.85672 4.89986 5.03993 5.08714 5.15173 5.24485 5.24987 5.34772 5.40084 5.41989 5.46388 5.61356 5.64004 5.65376 5.79121 5.85070 5.95860 6.00452 6.04277 6.21369 6.27393 6.31831 6.50944 6.60756 7.12246 7.21611 7.32896 7.53520 7.58120 7.92165 8.04230 8.59239 9.16119 9.52182 10.03584 10.74152 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.042345 B = 0.001498 C = 0.001475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.079928 B =18685.059596 C =18983.688683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.077 3.923 3 H 0.081 0.919 4 N -0.657 5.657 5 C 0.053 3.947 6 C 0.440 3.560 7 O -0.582 6.582 8 N -0.563 5.563 9 C -0.301 4.301 10 H 0.103 0.897 11 C 0.023 3.977 12 N -0.902 5.902 13 Si 0.931 3.069 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.274 1.274 17 C 0.153 3.847 18 H 0.090 0.910 19 C -0.152 4.152 20 N -0.721 5.721 21 C 0.520 3.480 22 O -0.540 6.540 23 C -0.153 4.153 24 C 0.150 3.850 25 N -0.373 5.373 26 C 0.055 3.945 27 C -0.277 4.277 28 C 0.044 3.956 29 N -0.298 5.298 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.353 0.647 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.049 0.951 39 H 0.087 0.913 40 H 0.049 0.951 41 H 0.399 0.601 42 H 0.098 0.902 43 H 0.108 0.892 44 H 0.094 0.906 45 H 0.105 0.895 46 H 0.174 0.826 47 H 0.147 0.853 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.008 3.955 -28.916 29.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.034 4.034 3 H 0.099 0.901 4 N -0.290 5.290 5 C -0.080 4.080 6 C 0.225 3.775 7 O -0.466 6.466 8 N -0.200 5.200 9 C -0.430 4.430 10 H 0.120 0.880 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.758 3.242 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.199 1.199 17 C 0.048 3.952 18 H 0.108 0.892 19 C -0.210 4.210 20 N -0.372 5.372 21 C 0.305 3.695 22 O -0.417 6.417 23 C -0.194 4.194 24 C 0.028 3.972 25 N -0.155 5.155 26 C -0.091 4.091 27 C -0.307 4.307 28 C -0.142 4.142 29 N -0.119 5.119 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.173 0.827 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.225 0.775 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.106 0.894 40 H 0.069 0.931 41 H 0.233 0.767 42 H 0.117 0.883 43 H 0.126 0.874 44 H 0.113 0.887 45 H 0.124 0.876 46 H 0.191 0.809 47 H 0.164 0.836 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -5.424 2.347 -27.691 28.314 hybrid contribution -0.502 1.010 0.260 1.158 sum -5.926 3.358 -27.431 28.264 Atomic orbital electron populations 1.22543 0.97056 1.02599 1.02140 1.21753 0.92638 0.98170 0.90853 0.90075 1.60005 1.57590 1.09144 1.02236 1.21688 0.99948 0.95610 0.90743 1.19789 0.85267 0.88254 0.84164 1.90533 1.55268 1.16259 1.84584 1.41850 1.57732 1.12451 1.07934 1.19664 1.40087 0.96469 0.86794 0.87953 1.25255 0.97595 0.95766 0.99240 1.69603 1.48596 1.08857 1.27267 0.85916 0.79477 0.78819 0.80005 1.19872 1.20979 1.19914 1.20916 0.94972 0.97144 0.82146 0.89208 1.22034 0.94170 1.01809 1.03022 1.46072 1.67204 1.14037 1.09899 1.20260 0.77638 0.87225 0.84380 1.90747 1.50085 1.15861 1.85028 1.21884 1.04842 0.99781 0.92892 1.21428 1.01345 0.93473 0.80905 1.48799 1.15547 1.41301 1.09877 1.22637 0.99583 1.00775 0.86091 1.21535 0.97626 1.09570 1.01955 1.23915 0.99140 0.99884 0.91305 1.77343 1.01044 1.13134 1.20389 0.92179 0.92265 0.92157 0.82685 0.89609 0.93780 0.77490 0.91826 0.93188 0.89423 0.93142 0.76716 0.88340 0.87422 0.88730 0.87647 0.80900 0.83561 0.80079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 9.00 37.16 0.33 -1.46 16 2 C 0.08 0.84 2.22 -67.71 -0.15 0.69 16 3 H 0.08 0.81 7.80 -51.93 -0.40 0.41 16 4 N -0.66 -9.78 5.11 -107.99 -0.55 -10.33 16 5 C 0.05 0.87 5.96 -4.98 -0.03 0.84 16 6 C 0.44 10.11 7.82 -10.99 -0.09 10.03 16 7 O -0.58 -15.54 15.78 5.55 0.09 -15.45 16 8 N -0.56 -14.02 5.29 -10.96 -0.06 -14.08 16 9 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 10 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 11 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 12 N -0.90 -24.28 13.05 55.50 0.72 -23.56 16 13 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 17 C 0.15 1.67 2.34 -67.93 -0.16 1.51 16 18 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 19 C -0.15 -1.83 9.33 37.16 0.35 -1.48 16 20 N -0.72 -6.00 4.38 -53.81 -0.24 -6.23 16 21 C 0.52 4.83 7.79 -10.98 -0.09 4.75 16 22 O -0.54 -7.07 15.64 5.56 0.09 -6.99 16 23 C -0.15 -1.02 5.89 -27.88 -0.16 -1.18 16 24 C 0.15 1.08 5.80 -4.04 -0.02 1.06 16 25 N -0.37 -3.04 3.68 -61.36 -0.23 -3.27 16 26 C 0.06 0.36 11.45 -17.22 -0.20 0.17 16 27 C -0.28 -1.83 10.80 -40.01 -0.43 -2.27 16 28 C 0.04 0.33 12.03 -17.37 -0.21 0.12 16 29 N -0.30 -2.87 12.42 30.62 0.38 -2.49 16 30 H 0.06 0.61 7.45 -51.93 -0.39 0.22 16 31 H 0.06 0.47 7.45 -51.93 -0.39 0.09 16 32 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 33 H 0.35 5.61 8.17 -39.29 -0.32 5.29 16 34 H 0.09 1.30 8.06 -51.93 -0.42 0.89 16 35 H 0.04 0.66 7.44 -51.93 -0.39 0.27 16 36 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 37 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.05 0.55 8.14 -51.92 -0.42 0.12 16 39 H 0.09 1.25 7.60 -51.93 -0.39 0.85 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.40 2.31 8.39 -40.82 -0.34 1.97 16 42 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 45 H 0.11 0.64 8.03 -51.92 -0.42 0.22 16 46 H 0.17 0.60 8.06 -52.49 -0.42 0.17 16 47 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 48 H 0.18 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 406.14 15.07 6.12 6.12 Total: -1.00 -34.22 406.14 -7.28 -41.50 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -7.49 Total: 14.03 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -1.10 Total: 4.83 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: 0.03 Total: -59.96 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: 0.17 Total: -22.44 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.22 -7.28 -41.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755227492.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.386 kcal (2) G-P(sol) polarization free energy of solvation -34.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds