Wall clock time and date at job start Tue Mar 31 2020 19:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46860 * 2 1 4 4 N 1.46902 * 109.46934 * 120.00125 * 2 1 3 5 5 C 1.46900 * 110.99869 * 274.99975 * 4 2 1 6 6 C 1.50698 * 109.47435 * 180.02562 * 5 4 2 7 7 O 1.21293 * 119.99483 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00242 * 180.02562 * 6 5 4 9 9 C 1.37102 * 119.99558 * 180.02562 * 8 6 5 10 10 H 1.07998 * 120.00513 * 359.97438 * 9 8 6 11 11 C 1.38955 * 119.99446 * 179.97438 * 9 8 6 12 12 N 1.31411 * 120.00006 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99760 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47060 * 60.00025 * 13 11 9 15 15 H 1.48498 * 109.47083 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47502 * 300.00068 * 13 11 9 17 17 C 1.52998 * 109.47106 * 239.99802 * 2 1 3 18 18 H 1.08996 * 109.47361 * 300.00385 * 17 2 1 19 19 C 1.52999 * 109.47106 * 179.97438 * 17 2 1 20 20 N 1.46500 * 109.47109 * 60.00292 * 17 2 1 21 21 C 1.34781 * 120.00246 * 204.99921 * 20 17 2 22 22 O 1.21279 * 119.99642 * 359.97438 * 21 20 17 23 23 C 1.50697 * 120.00155 * 179.97438 * 21 20 17 24 24 C 1.53004 * 109.47197 * 180.02562 * 23 21 20 25 25 N 1.46494 * 109.47106 * 179.97438 * 24 23 21 26 26 C 1.34954 * 126.03475 * 124.99860 * 25 24 23 27 27 C 1.35316 * 107.74368 * 179.73518 * 26 25 24 28 28 C 1.39868 * 107.92272 * 0.02562 * 27 26 25 29 29 N 1.30837 * 108.20148 * 359.97438 * 28 27 26 30 30 H 1.09004 * 109.47618 * 300.00045 * 1 2 3 31 31 H 1.09006 * 109.47465 * 60.00250 * 1 2 3 32 32 H 1.09005 * 109.47414 * 179.97438 * 1 2 3 33 33 H 1.00904 * 111.00219 * 38.95025 * 4 2 1 34 34 H 1.09002 * 109.47368 * 300.00361 * 5 4 2 35 35 H 1.09000 * 109.47407 * 60.00000 * 5 4 2 36 36 H 0.96994 * 120.00138 * 359.97438 * 8 6 5 37 37 H 0.97000 * 119.99429 * 179.97438 * 12 11 9 38 38 H 1.09008 * 109.46949 * 300.00362 * 19 17 2 39 39 H 1.08998 * 109.46941 * 60.00267 * 19 17 2 40 40 H 1.08993 * 109.47135 * 180.02562 * 19 17 2 41 41 H 0.97003 * 120.00156 * 24.99798 * 20 17 2 42 42 H 1.09002 * 109.47181 * 59.99624 * 23 21 20 43 43 H 1.08998 * 109.47063 * 300.00199 * 23 21 20 44 44 H 1.08999 * 109.46666 * 59.99687 * 24 23 21 45 45 H 1.09007 * 109.46675 * 300.00058 * 24 23 21 46 46 H 1.07999 * 126.12426 * 359.75442 * 26 25 24 47 47 H 1.07999 * 126.03437 * 179.97438 * 27 26 25 48 48 H 1.08001 * 125.89990 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2225 2.3469 6 6 2.5884 -0.5215 3.5558 7 8 2.8695 -1.6982 3.4697 8 7 2.7285 0.1206 4.7324 9 6 3.1893 -0.5563 5.8320 10 1 3.4397 -1.6041 5.7555 11 6 3.3343 0.1059 7.0450 12 7 3.0301 1.3809 7.1381 13 14 3.9615 -0.8165 8.5434 14 1 5.3177 -1.3524 8.2629 15 1 4.0255 0.1087 9.7032 16 1 3.0405 -1.9389 8.8552 17 6 2.0400 -0.7213 -1.2492 18 1 1.6766 -1.7489 -1.2492 19 6 3.5700 -0.7207 -1.2495 20 7 1.5517 -0.0307 -2.4454 21 6 1.4230 -0.7030 -3.6064 22 8 1.7118 -1.8796 -3.6609 23 6 0.9201 0.0073 -4.8367 24 6 0.8682 -0.9760 -6.0079 25 7 0.3788 -0.2856 -7.2037 26 6 1.0044 -0.2263 -8.3980 27 6 0.2257 0.4967 -9.2359 28 6 -0.9144 0.8932 -8.5294 29 7 -0.8238 0.4246 -7.3112 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.4494 -1.4980 1.4101 34 1 2.7587 1.0462 2.1183 35 1 1.0870 0.6163 2.5525 36 1 2.5040 1.0617 4.8011 37 1 3.1310 1.8430 7.9849 38 1 3.9329 0.3072 -1.2497 39 1 3.9336 -1.2343 -0.3596 40 1 3.9333 -1.2342 -2.1397 41 1 1.3210 0.9105 -2.4019 42 1 1.5923 0.8296 -5.0817 43 1 -0.0791 0.3991 -4.6471 44 1 0.1957 -1.7980 -5.7625 45 1 1.8674 -1.3682 -6.1975 46 1 1.9558 -0.6756 -8.6414 47 1 0.4462 0.7274 -10.2677 48 1 -1.7289 1.4841 -8.9217 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755227492.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:45 Heat of formation + Delta-G solvation = -24.046264 kcal Electronic energy + Delta-G solvation = -27926.828593 eV Core-core repulsion = 23824.313407 eV Total energy + Delta-G solvation = -4102.515186 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.01996 -41.03012 -40.16905 -38.49227 -36.06536 -35.44314 -35.21796 -33.27250 -32.27072 -31.22994 -30.69062 -30.09830 -27.93547 -25.84609 -25.83750 -24.13703 -22.01575 -21.82844 -21.69040 -21.08849 -21.03430 -19.91043 -18.66697 -17.90716 -17.44434 -17.31982 -16.83671 -16.62165 -16.37875 -16.05112 -15.81065 -15.33304 -15.24616 -15.08613 -14.99316 -14.66117 -14.49141 -14.15098 -13.99653 -13.88018 -13.58036 -13.51930 -13.37414 -13.23541 -13.12705 -12.98594 -12.71917 -12.55597 -12.42695 -12.39359 -12.22995 -12.12422 -11.67422 -11.54683 -11.49588 -11.01837 -10.37620 -10.35684 -10.14345 -10.00535 -9.49478 -9.29125 -8.46160 -5.94598 1.00524 1.39944 1.42053 1.50785 1.52687 1.58143 1.99756 2.07014 2.13457 2.31092 3.01192 3.21462 3.53283 3.56444 3.61792 3.72262 3.91309 4.03045 4.12196 4.20069 4.21781 4.32181 4.35278 4.47846 4.48507 4.55028 4.58930 4.62286 4.73026 4.79626 4.85257 4.88000 4.94572 4.97978 5.07898 5.19887 5.21866 5.37647 5.41499 5.53308 5.79070 5.90305 6.10962 6.13718 6.35627 6.51887 6.61277 6.80303 7.13645 7.21747 7.57659 8.13410 8.70833 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.042345 B = 0.001498 C = 0.001475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.079928 B =18685.059596 C =18983.688683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.084 3.916 3 H 0.102 0.898 4 N -0.672 5.672 5 C 0.069 3.931 6 C 0.437 3.563 7 O -0.624 6.624 8 N -0.573 5.573 9 C -0.336 4.336 10 H 0.078 0.922 11 C -0.011 4.011 12 N -0.919 5.919 13 Si 0.991 3.009 14 H -0.273 1.273 15 H -0.270 1.270 16 H -0.273 1.273 17 C 0.161 3.839 18 H 0.064 0.936 19 C -0.145 4.145 20 N -0.707 5.707 21 C 0.521 3.479 22 O -0.581 6.581 23 C -0.137 4.137 24 C 0.150 3.850 25 N -0.382 5.382 26 C 0.051 3.949 27 C -0.286 4.286 28 C 0.036 3.964 29 N -0.337 5.337 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.344 0.656 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.397 0.603 37 H 0.277 0.723 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.042 0.958 41 H 0.416 0.584 42 H 0.117 0.883 43 H 0.111 0.889 44 H 0.079 0.921 45 H 0.116 0.884 46 H 0.202 0.798 47 H 0.167 0.833 48 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.228 5.809 -30.159 31.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.026 4.026 3 H 0.120 0.880 4 N -0.304 5.304 5 C -0.063 4.063 6 C 0.224 3.776 7 O -0.511 6.511 8 N -0.210 5.210 9 C -0.465 4.465 10 H 0.096 0.904 11 C -0.211 4.211 12 N -0.560 5.560 13 Si 0.815 3.185 14 H -0.198 1.198 15 H -0.194 1.194 16 H -0.198 1.198 17 C 0.056 3.944 18 H 0.082 0.918 19 C -0.204 4.204 20 N -0.360 5.360 21 C 0.308 3.692 22 O -0.461 6.461 23 C -0.177 4.177 24 C 0.028 3.972 25 N -0.164 5.164 26 C -0.095 4.095 27 C -0.315 4.315 28 C -0.149 4.149 29 N -0.159 5.159 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.163 0.837 34 H 0.126 0.874 35 H 0.087 0.913 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.253 0.747 42 H 0.135 0.865 43 H 0.130 0.870 44 H 0.097 0.903 45 H 0.134 0.866 46 H 0.219 0.781 47 H 0.184 0.816 48 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -5.665 4.267 -28.954 29.810 hybrid contribution -0.437 0.415 0.534 0.805 sum -6.102 4.681 -28.421 29.443 Atomic orbital electron populations 1.22477 0.95791 1.02245 1.03249 1.21769 0.93541 0.98523 0.88812 0.88024 1.59966 1.58480 1.09124 1.02820 1.21534 1.01258 0.95185 0.88300 1.20939 0.83412 0.88019 0.85216 1.90504 1.56630 1.18467 1.85469 1.41911 1.58314 1.12620 1.08160 1.19626 1.42271 0.95982 0.88652 0.90443 1.25991 0.97202 0.96594 1.01268 1.69658 1.48554 1.09610 1.28151 0.85022 0.78692 0.77860 0.76970 1.19838 1.19446 1.19793 1.20627 0.94238 0.96275 0.83294 0.91781 1.21933 0.94918 1.02180 1.01325 1.45873 1.66561 1.14712 1.08815 1.20698 0.76721 0.86708 0.85071 1.90739 1.51893 1.17804 1.85647 1.21758 1.05208 0.99624 0.91148 1.21405 1.01424 0.93180 0.81156 1.48864 1.15529 1.41558 1.10465 1.23214 1.00487 1.00316 0.85448 1.21878 0.97270 1.09408 1.02927 1.24413 1.00029 0.99516 0.90952 1.77287 1.02256 1.14642 1.21727 0.92128 0.90020 0.93309 0.83664 0.87436 0.91333 0.76927 0.91316 0.91688 0.92039 0.93918 0.74736 0.86488 0.87033 0.90313 0.86626 0.78130 0.81593 0.78015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 9.00 71.98 0.65 -2.45 16 2 C 0.08 1.67 2.22 44.91 0.10 1.77 16 3 H 0.10 1.67 7.80 -2.39 -0.02 1.65 16 4 N -0.67 -19.51 5.11 -495.58 -2.53 -22.04 16 5 C 0.07 2.20 5.96 85.56 0.51 2.71 16 6 C 0.44 20.24 7.82 87.66 0.69 20.92 16 7 O -0.62 -34.27 15.78 -3.07 -0.05 -34.32 16 8 N -0.57 -28.85 5.29 -306.98 -1.62 -30.47 16 9 C -0.34 -18.96 9.68 84.04 0.81 -18.15 16 10 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 11 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 12 N -0.92 -48.99 13.05 21.66 0.28 -48.71 16 13 Si 0.99 42.77 29.55 68.60 2.03 44.80 16 14 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 15 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 16 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 17 C 0.16 3.38 2.34 44.99 0.11 3.49 16 18 H 0.06 1.72 7.58 -2.39 -0.02 1.70 16 19 C -0.15 -3.41 9.33 71.98 0.67 -2.74 16 20 N -0.71 -10.44 4.38 -442.54 -1.94 -12.38 16 21 C 0.52 9.11 7.79 87.66 0.68 9.79 16 22 O -0.58 -15.25 15.64 -3.03 -0.05 -15.30 16 23 C -0.14 -1.59 5.89 29.85 0.18 -1.42 16 24 C 0.15 2.03 5.80 86.38 0.50 2.53 16 25 N -0.38 -5.77 3.68 -348.06 -1.28 -7.05 16 26 C 0.05 0.58 11.45 83.54 0.96 1.54 16 27 C -0.29 -3.25 10.80 21.99 0.24 -3.01 16 28 C 0.04 0.50 12.03 85.24 1.02 1.53 16 29 N -0.34 -6.19 12.42 -57.02 -0.71 -6.90 16 30 H 0.06 1.07 7.45 -2.39 -0.02 1.05 16 31 H 0.08 1.05 7.45 -2.38 -0.02 1.03 16 32 H 0.05 0.97 8.13 -2.38 -0.02 0.95 16 33 H 0.34 11.05 8.17 -89.69 -0.73 10.32 16 34 H 0.11 2.99 8.06 -2.39 -0.02 2.97 16 35 H 0.07 1.87 7.44 -2.39 -0.02 1.86 16 36 H 0.40 18.83 7.90 -92.71 -0.73 18.10 16 37 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 38 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.06 1.78 7.60 -2.39 -0.02 1.76 16 40 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.42 3.51 8.39 -92.71 -0.78 2.73 16 42 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.08 1.30 8.10 -2.39 -0.02 1.28 16 45 H 0.12 1.29 8.03 -2.38 -0.02 1.27 16 46 H 0.20 0.89 8.06 -2.91 -0.02 0.86 16 47 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 48 H 0.20 1.57 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -76.15 406.14 0.47 -75.68 By element: Atomic # 1 Polarization: 41.51 SS G_CDS: -1.25 Total: 40.27 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 7.58 Total: 16.41 kcal Atomic # 7 Polarization: -119.75 SS G_CDS: -7.80 Total: -127.55 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -0.10 Total: -49.61 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -76.15 0.47 -75.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755227492.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.637 kcal (2) G-P(sol) polarization free energy of solvation -76.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds